Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G120000 Populus trichocarpa HOM05D006146 ORTHO05D007924 1.4e-235 819.3 446 100.0
Cfa017174 Carpinus fangiana HOM05D006146 ORTHO05D007924 2.7e-170 602.4 446 71.1
Dinv16910 Davidia involucrata HOM05D006146 ORTHO05D007924 1.1e-166 590.5 447 67.8
CiPaw.09G211700 Carya illinoinensis HOM05D006146 ORTHO05D007924 7.7e-165 584.3 443 68.4
RcHm_v2.0_Chr3g0462541 Rosa chinensis HOM05D006146 ORTHO05D007924 7.7e-165 584.3 447 67.3
Manes.08G094300 Manihot esculenta HOM05D006146 ORTHO05D007924 1.7e-164 583.2 385 76.6
vmacro20300 Vaccinium macrocarpon HOM05D006146 ORTHO05D007924 1.9e-163 579.7 447 68.2
Prupe.6G280600 Prunus persica HOM05D006146 ORTHO05D007924 4.7e-162 575.1 447 69.8
QL07p034872 Quercus lobata HOM05D006146 ORTHO05D007924 3.4e-160 568.9 445 66.5
Thecc.05G012100 Theobroma cacao HOM05D006146 ORTHO05D007924 2.8e-159 565.8 457 65.9
TAR636G3413 Trochodendron aralioides HOM05D006146 ORTHO05D007924 1.2e-157 560.5 419 68.0
Haze_21031 Corylus avellana HOM05D006146 ORTHO05D007924 2.0e-157 559.7 385 74.5
Lj1g0005300 Lotus japonicus HOM05D006146 ORTHO05D007924 3.5e-157 558.9 435 68.0
CSS0000590 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 2.3e-156 556.2 445 65.8
CSS0012094 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 2.3e-156 556.2 445 65.8
Peaxi162Scf01132g00127 Petunia axillaris HOM05D006146 ORTHO05D007924 2.9e-156 555.8 445 65.6
FAN14G4754 Fragaria x ananassa HOM05D006146 ORTHO05D007924 3.3e-155 552.4 447 66.9
Gorai.012G116800 Gossypium raimondii HOM05D006146 ORTHO05D007924 3.3e-155 552.4 453 64.9
MD00G1062300 Malus domestica HOM05D006146 ORTHO05D007924 1.0e-153 547.4 445 64.3
FvH4_6g11110 Fragaria vesca HOM05D006146 ORTHO05D007924 1.8e-153 546.6 447 66.7
Gohir.A04G093600 Gossypium hirsutum HOM05D006146 ORTHO05D007924 2.3e-153 546.2 453 64.7
TWI53G1621 Tripterygium wilfordii HOM05D006146 ORTHO05D007924 2.3e-153 546.2 455 66.6
Cc06_g01080 Coffea canephora HOM05D006146 ORTHO05D007924 4.0e-153 545.4 446 63.7
FAN02G2047 Fragaria x ananassa HOM05D006146 ORTHO05D007924 6.8e-153 544.7 447 65.8
Gohir.A09G166500 Gossypium hirsutum HOM05D006146 ORTHO05D007924 2.6e-152 542.7 455 64.4
Lj2C71G10 Lonicera japonica HOM05D003030 ORTHO05D003610 3.4e-152 542.3 451 63.0
Gorai.006G183800 Gossypium raimondii HOM05D006146 ORTHO05D007924 2.2e-151 539.7 455 64.0
Psat3g126240 Pisum sativum HOM05D006146 ORTHO05D007924 2.2e-151 539.7 445 67.0
Gohir.D09G162100 Gossypium hirsutum HOM05D006146 ORTHO05D007924 6.4e-151 538.1 455 64.0
Rhsim05G0219200 Rhododendron simsii HOM05D006146 ORTHO05D007924 2.4e-150 536.2 446 63.2
MD12G1172300 Malus domestica HOM05D006146 ORTHO05D007924 9.2e-150 534.3 447 65.3
Oeu042663.2 Olea europaea HOM05D006146 ORTHO05D007924 5.6e-147 525.0 427 63.9
Nitab4.5_0003654g0010 Nicotiana tabacum HOM05D006146 ORTHO05D007924 9.5e-147 524.2 422 65.2
PGSC0003DMG400006271 Solanum tuberosum HOM05D006146 ORTHO05D007924 1.6e-146 523.5 455 62.2
Glyma.18G204000 Glycine max HOM05D006146 ORTHO05D007924 2.1e-146 523.1 446 61.9
Solyc09g005120.3 Solanum lycopersicum HOM05D006146 ORTHO05D007924 6.2e-146 521.5 446 59.9
GSVIVG01003939001 Vitis vinifera HOM05D006146 ORTHO05D007924 8.0e-146 521.2 382 69.4
CAN.G133.15 Capsicum annuum HOM05D006146 ORTHO05D007924 1.4e-145 520.4 446 61.4
Nitab4.5_0000195g0240 Nicotiana tabacum HOM05D006146 ORTHO05D007924 1.4e-145 520.4 422 65.6
Sopen09g001100 Solanum pennellii HOM05D006146 ORTHO05D007924 4.0e-145 518.8 446 59.6
Aqoxy4G02469 Aquilegia oxysepala HOM05D006146 ORTHO05D007924 6.8e-145 518.1 447 60.9
Hund14889 Selenicereus undatus HOM05D006146 ORTHO05D007924 6.8e-145 518.1 450 63.3
arahy.Tifrunner.gnm1.ann1.S46L09 Arachis hypogaea HOM05D006146 ORTHO05D007924 8.9e-145 517.7 435 66.0
Medtr7g069480 Medicago truncatula HOM05D006146 ORTHO05D007924 8.9e-145 517.7 446 61.2
CANSAT35G1531 Cannabis sativa HOM05D006146 ORTHO05D007924 2.0e-144 516.5 425 63.5
Atru.chr8.2278 Acer truncatum HOM05D006146 ORTHO05D007924 1.7e-143 513.5 446 62.1
Dinv13137 Davidia involucrata HOM05D006146 ORTHO05D007924 3.7e-143 512.3 446 59.9
arahy.Tifrunner.gnm1.ann1.D29HQK Arachis hypogaea HOM05D006146 ORTHO05D007924 4.1e-142 508.8 436 65.4
ClCG10G022330 Citrullus lanatus HOM05D006146 ORTHO05D007924 9.2e-142 507.7 475 57.5
Ciclev10011366m.g Citrus clementina HOM05D006146 ORTHO05D007924 9.2e-142 507.7 446 60.5
Glyma.07G152900 Glycine max HOM05D006146 ORTHO05D007924 1.3e-140 503.8 448 61.8
Lalb_Chr03g0043371 Lupinus albus HOM05D006146 ORTHO05D007924 1.3e-140 503.8 453 61.1
AT3G08970 Arabidopsis thaliana HOM05D006146 ORTHO05D007924 1.7e-140 503.4 441 59.4
EL10Ac5g12530 Beta vulgaris HOM05D006146 ORTHO05D007924 1.5e-139 500.4 432 60.9
ECA236G4528 Erigeron canadensis HOM05D006146 ORTHO05D007924 2.5e-139 499.6 448 60.9
SGA_v2.0_scaffold85G26717 Striga asiatica HOM05D006146 ORTHO05D007924 3.3e-139 499.2 447 60.9
MELO3C009146.2 Cucumis melo HOM05D006146 ORTHO05D007924 1.6e-138 496.9 479 56.6
Sed0026013 Sechium edule HOM05D006146 ORTHO05D007924 1.1e-137 494.2 446 61.0
Lsat_1_v5_gn_8_100801 Lactuca sativa HOM05D006146 ORTHO05D007924 1.8e-137 493.4 445 58.4
Carub.0003s0810 Capsella rubella HOM05D006146 ORTHO05D007924 4.0e-137 492.3 446 58.3
Ca_07664_v3 Cicer arietinum L. HOM05D006146 ORTHO05D007924 5.2e-137 491.9 419 61.3
AUR62010446 Chenopodium quinoa HOM05D006146 ORTHO05D007924 8.9e-137 491.1 421 61.8
MSTRG.5562 Avicennia marina HOM05D006146 ORTHO05D007924 1.2e-136 490.7 449 58.6
Nn2g10908 Nelumbo nucifera HOM05D006146 ORTHO05D007924 1.2e-136 490.7 421 60.3
AL3G19990 Arabidopsis lyrata HOM05D006146 ORTHO05D007924 2.6e-136 489.6 427 58.8
CsaV3_3G033560 Cucumis sativus L. HOM05D006146 ORTHO05D007924 4.4e-136 488.8 478 55.4
MBI03_g05510_MAGBIO Magnolia biondii HOM05D006146 ORTHO05D007924 4.4e-136 488.8 448 62.3
Sabra16G0115900 Salix brachista HOM05D006146 ORTHO05D007924 9.9e-136 487.6 416 70.4
AUR62030469 Chenopodium quinoa HOM05D006146 ORTHO05D007924 1.3e-135 487.3 426 63.8
Aa31LG5G18940 Aethionema arabicum HOM05D006146 ORTHO05D007924 8.3e-135 484.6 421 59.6
Migut.J00133 Erythranthe guttata HOM05D006146 ORTHO05D007924 8.3e-135 484.6 448 57.6
FAN05G4820 Fragaria x ananassa HOM05D006146 ORTHO05D007924 1.4e-134 483.8 469 59.5
VMungo1383G3422 Vigna mungo HOM05D006146 ORTHO05D007924 1.9e-134 483.4 444 58.3
BraA05t22771Z Brassica rapa HOM05D006146 ORTHO05D007924 5.4e-134 481.9 421 59.6
Ah.12g058880 Amaranthus hybridus HOM05D006146 ORTHO05D007924 1.2e-133 480.7 471 56.1
Thhalv10020374m.g Eutrema salsugineum HOM05D006146 ORTHO05D007924 1.2e-133 480.7 422 62.1
TPR.G35447 Trifolium pratense HOM05D006146 ORTHO05D007924 1.6e-133 480.3 446 60.8
A05p39870 Brassica napus HOM05D006146 ORTHO05D007924 3.5e-133 479.2 385 61.0
BolC5t34544H Brassica oleracea HOM05D006146 ORTHO05D007924 3.5e-133 479.2 426 58.7
Eucgr.A00545 Eucalyptus grandis HOM05D006146 ORTHO05D007924 3.5e-133 479.2 447 55.7
Phvul.008G095600 Phaseolus vulgaris HOM05D006146 ORTHO05D007924 3.5e-133 479.2 433 61.4
Actinidia11568 Actinidia chinensis HOM05D006146 ORTHO05D007924 4.6e-133 478.8 416 62.7
Gohir.D04G132900 Gossypium hirsutum HOM05D006146 ORTHO05D007924 4.6e-133 478.8 511 54.8
C05p58910 Brassica napus HOM05D006146 ORTHO05D007924 1.7e-132 476.9 385 60.8
Sc22g0002570 Simmondsia chinensis HOM05D006146 ORTHO05D007924 1.7e-132 476.9 430 61.4
PSO384G0066 Papaver somniferum HOM05D006146 ORTHO05D007924 8.6e-132 474.6 456 61.4
HanXRQChr12g0383181 Helianthus annuus HOM05D006146 ORTHO05D007924 1.5e-131 473.8 384 62.5
Sp3g07390 Schrenkiella parvula HOM05D006146 ORTHO05D007924 1.5e-131 473.8 381 63.8
Glyma.16G098700 Glycine max HOM05D006146 ORTHO05D007924 3.3e-131 472.6 406 63.5
PGR031G2778 Punica granatum HOM05D006146 ORTHO05D007924 4.3e-131 472.2 447 60.0
Eucgr.A00544 Eucalyptus grandis HOM05D006146 ORTHO05D007924 5.6e-131 471.9 420 56.7
THA.LOC104816204 Tarenaya hassleriana HOM05D006146 ORTHO05D007924 4.7e-130 468.8 385 61.3
CARHR083310 Cardamine hirsuta HOM05D006146 ORTHO05D007924 1.1e-129 467.6 380 62.1
PSO339G2519 Papaver somniferum HOM05D006146 ORTHO05D007924 3.1e-129 466.1 451 59.2
SalBow5G2678 Salvia bowleyana HOM05D006146 ORTHO05D007924 9.9e-128 461.1 385 61.3
HPP92_025101 Vanilla planifolia HOM05D006146 ORTHO05D007924 3.9e-124 449.1 440 51.8
CDE06G0106 Ceratophyllum demersum HOM05D003030 ORTHO05D003610 1.2e-120 437.6 446 52.0
unitig_578.g15902 Utricularia gibba HOM05D003030 ORTHO05D003610 2.6e-120 436.4 445 54.4
SHI12853 Sapria himalayana HOM05D006146 ORTHO05D007924 6.4e-119 431.8 442 52.5
COL.COLO4_14502 Corchorus olitorius HOM05D006146 ORTHO05D007924 1.7e-116 423.7 295 72.9
Zm00001eb396940 Zea mays HOM05D006146 ORTHO05D007924 1.8e-113 413.7 453 49.9
ATR0681G078 Amborella trichopoda HOM05D006146 ORTHO05D007924 3.1e-113 412.9 445 51.0
Os03g0293000 Oryza sativa ssp. japonica HOM05D006146 ORTHO05D007924 1.4e-110 404.1 452 47.6
DCAR_015389 Daucus carota HOM05D006146 ORTHO05D007924 7.9e-109 398.3 450 54.7
Hma1.2p1_0362F.1_g136590 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 1.3e-98 364.4 276 68.1
CSS0039643 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 1.6e-98 364.0 447 49.7
CSS0015893 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 2.8e-98 363.2 271 68.3
BcaC05g29631 Brassica carinata HOM05D006146 ORTHO05D007924 4.8e-98 362.5 431 50.8
Hma1.2p1_0362F.1_g136580 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 4.5e-96 355.9 289 65.1
QL08p015836 Quercus lobata HOM05D006146 ORTHO05D007924 1.1e-94 351.3 320 59.7
SEGI_31782 Sequoiadendron giganteum HOM05D006146 ORTHO05D007924 2.7e-93 346.7 445 43.6
CSS0011042 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 3.8e-87 326.2 271 63.5
CSS0031746 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 3.0e-84 316.6 384 49.2
CSS0030843 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 5.7e-83 312.4 439 45.8
FAN09G2516 Fragaria x ananassa HOM05D006146 ORTHO05D007924 7.4e-75 285.4 216 67.6
Cpa.g.sc120.50 Carica papaya HOM05D006146 ORTHO05D007924 3.2e-70 270.0 214 68.2
Hund10972 Selenicereus undatus HOM05D006146 ORTHO05D007924 4.4e-67 259.6 214 62.1
AagrBONN_evm.TU.Sc2ySwM_228.96 Anthoceros agrestis HOM05D006146 ORTHO05D007924 1.9e-62 244.2 374 39.0
Hund10973 Selenicereus undatus HOM05D006146 ORTHO05D007924 1.5e-59 234.6 238 53.4
SMO347G0184 Selaginella moellendorffii HOM05D006146 ORTHO05D007924 2.7e-53 213.8 450 32.0
Mapoly0184s0019 Marchantia polymorpha HOM05D006146 ORTHO05D007924 1.2e-51 208.4 432 32.2
Pp3c20_14730 Physcomitrium patens HOM05D006146 ORTHO05D007924 1.6e-48 198.0 381 31.5
Zm00001eb225170 Zea mays HOM05D006146 ORTHO05D007924 1.9e-33 147.9 162 52.5
Zm00001eb032720 Zea mays HOM05D006146 ORTHO05D007924 2.0e-27 127.9 173 45.1
Haze_20655 Corylus avellana HOM05D006146 ORTHO05D007924 2.3e-23 114.4 167 44.9
CBR_g38983 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-22 110.2 286 27.3
Thecc.05G011800 Theobroma cacao HOM05D006146 ORTHO05D007924 8.9e-20 102.4 112 50.0
Rhsim01G0279400 Rhododendron simsii HOM05D000036 ORTHO05D005472 1.5e-19 101.7 74 64.9
QL07p034801 Quercus lobata HOM05D006146 ORTHO05D007924 4.4e-19 100.1 174 39.7
Rhsim05G0215400 Rhododendron simsii HOM05D000003 ORTHO05D000004 9.2e-17 92.4 98 50.0
Rhsim05G0219400 Rhododendron simsii HOM05D006146 ORTHO05D007924 1.7e-07 61.6 58 51.7
CAN.G776.3 Capsicum annuum HOM05D006146 ORTHO05D115279 9.6e-06 55.8 62 43.5


User provided reference genes

Program Settings