Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G119650 Populus trichocarpa HOM05D000406 ORTHO05D006918 1.1e-29 132.5 63 100.0
Potri.016G119500 Populus trichocarpa HOM05D000406 ORTHO05D006918 1.9e-21 105.1 60 81.7
VMungo0647G1306 Vigna mungo HOM05D000406 ORTHO05D006918 2.5e-21 104.8 60 80.0
Sabra16G0115400 Salix brachista HOM05D000406 ORTHO05D006918 5.7e-21 103.6 60 80.0
Lalb_Chr04g0251411 Lupinus albus HOM05D000406 ORTHO05D006918 7.4e-21 103.2 60 76.7
Phvul.008G178900 Phaseolus vulgaris HOM05D000406 ORTHO05D006918 7.4e-21 103.2 60 78.3
Phvul.011G011300 Phaseolus vulgaris HOM05D000406 ORTHO05D006918 7.4e-21 103.2 60 78.3
Dinv16899 Davidia involucrata HOM05D000406 ORTHO05D006918 9.6e-21 102.8 60 80.0
Manes.08G094100 Manihot esculenta HOM05D000406 ORTHO05D006918 9.6e-21 102.8 60 78.3
Ciclev10012248m.g Citrus clementina HOM05D000406 ORTHO05D006918 1.3e-20 102.4 60 80.0
Cc11_g00480 Coffea canephora HOM05D000406 ORTHO05D006918 1.6e-20 102.1 60 78.3
Duzib084G1089 Durio zibethinus HOM05D000406 ORTHO05D006918 2.1e-20 101.7 60 76.7
Medtr4g057850 Medicago truncatula HOM05D000406 ORTHO05D006918 2.1e-20 101.7 60 75.0
TWI74G0181 Tripterygium wilfordii HOM05D000406 ORTHO05D006918 2.1e-20 101.7 60 78.3
TWI77G0395 Tripterygium wilfordii HOM05D000406 ORTHO05D006918 2.1e-20 101.7 60 78.3
Gohir.D10G203600 Gossypium hirsutum HOM05D000406 ORTHO05D006918 2.8e-20 101.3 60 78.3
Thecc.03G046600 Theobroma cacao HOM05D000406 ORTHO05D006918 2.8e-20 101.3 60 76.7
arahy.Tifrunner.gnm1.ann1.1L30AV Arachis hypogaea HOM05D000406 ORTHO05D006918 3.7e-20 100.9 60 75.0
arahy.Tifrunner.gnm1.ann1.F052KA Arachis hypogaea HOM05D000406 ORTHO05D006918 3.7e-20 100.9 60 75.0
Gohir.A09G174600 Gossypium hirsutum HOM05D000406 ORTHO05D006918 3.7e-20 100.9 60 75.0
Gohir.A10G196500 Gossypium hirsutum HOM05D000406 ORTHO05D006918 4.8e-20 100.5 60 76.7
Gorai.011G228400 Gossypium raimondii HOM05D000406 ORTHO05D006918 4.8e-20 100.5 60 76.7
PGR031G2785 Punica granatum HOM05D000406 ORTHO05D006918 6.3e-20 100.1 60 76.7
QL07p035036 Quercus lobata HOM05D000406 ORTHO05D006918 6.3e-20 100.1 60 75.0
Actinidia11571 Actinidia chinensis HOM05D000406 ORTHO05D006918 8.2e-20 99.8 60 76.7
Cfa000488 Carpinus fangiana HOM05D000406 ORTHO05D006918 8.2e-20 99.8 60 76.7
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 8.2e-20 99.8 60 76.7
Eucgr.A00536 Eucalyptus grandis HOM05D000406 ORTHO05D006918 8.2e-20 99.8 60 76.7
Lj1g0007203 Lotus japonicus HOM05D000406 ORTHO05D006918 1.1e-19 99.4 60 75.0
Aqoxy4G02493 Aquilegia oxysepala HOM05D000406 ORTHO05D006918 1.4e-19 99.0 60 73.3
MSTRG.5564 Avicennia marina HOM05D000406 ORTHO05D006918 1.8e-19 98.6 60 75.0
CSS0022761 Camellia sinensis var. sinensis HOM05D000406 ORTHO05D006918 1.8e-19 98.6 60 75.0
Haze_21027 Corylus avellana HOM05D000406 ORTHO05D006918 1.8e-19 98.6 60 75.0
Haze_21034 Corylus avellana HOM05D000053 ORTHO05D000448 1.8e-19 98.6 60 75.0
CANSAT35G1945 Cannabis sativa HOM05D000406 ORTHO05D006918 2.4e-19 98.2 60 75.0
GSVIVG01003933001 Vitis vinifera HOM05D000406 ORTHO05D006918 2.4e-19 98.2 60 75.0
TPR.G11802 Trifolium pratense HOM05D000406 ORTHO05D006918 3.1e-19 97.8 60 70.0
Glyma.14G179300 Glycine max HOM05D000406 ORTHO05D006918 5.3e-19 97.1 61 75.4
Lalb_Chr17g0346101 Lupinus albus HOM05D000406 ORTHO05D006918 5.3e-19 97.1 60 73.3
FvH4_6g11130 Fragaria vesca HOM05D000406 ORTHO05D006918 6.9e-19 96.7 60 75.0
FAN05G0431 Fragaria x ananassa HOM05D000406 ORTHO05D006918 6.9e-19 96.7 60 75.0
FAN09G3983 Fragaria x ananassa HOM05D000406 ORTHO05D006918 6.9e-19 96.7 60 75.0
FAN14G2346 Fragaria x ananassa HOM05D000406 ORTHO05D006918 6.9e-19 96.7 60 75.0
FAN14G5957 Fragaria x ananassa HOM05D000406 ORTHO05D006918 6.9e-19 96.7 60 75.0
Hund14880 Selenicereus undatus HOM05D000406 ORTHO05D006918 6.9e-19 96.7 60 71.7
Sc22g0002560 Simmondsia chinensis HOM05D000406 ORTHO05D006918 6.9e-19 96.7 60 73.3
ATR0681G138 Amborella trichopoda HOM05D000406 ORTHO05D006918 9.0e-19 96.3 60 75.0
Ca_05376_v3 Cicer arietinum L. HOM05D000406 ORTHO05D006918 9.0e-19 96.3 60 70.0
THA.LOC104823292 Tarenaya hassleriana HOM05D000406 ORTHO05D006918 9.0e-19 96.3 61 73.8
CiPaw.09G211400 Carya illinoinensis HOM05D000406 ORTHO05D006918 1.2e-18 95.9 60 73.3
RcHm_v2.0_Chr3g0462571 Rosa chinensis HOM05D000406 ORTHO05D006918 1.2e-18 95.9 60 75.0
Sed0006450 Sechium edule HOM05D000406 ORTHO05D006918 1.2e-18 95.9 60 73.3
CDE06G0909 Ceratophyllum demersum HOM05D000406 ORTHO05D006918 1.5e-18 95.5 60 68.3
Psat0s2362g0040 Pisum sativum HOM05D000406 ORTHO05D006918 1.5e-18 95.5 60 68.3
SHI12849 Sapria himalayana HOM05D000406 ORTHO05D006918 1.5e-18 95.5 60 73.3
Sed0017323 Sechium edule HOM05D000406 ORTHO05D006918 1.5e-18 95.5 60 73.3
Atru.BG.221.p Acer truncatum HOM05D000406 ORTHO05D006918 2.0e-18 95.1 60 70.0
Nitab4.5_0000770g0070 Nicotiana tabacum HOM05D000954 ORTHO05D006918 2.0e-18 95.1 60 70.0
Prupe.2G034900 Prunus persica HOM05D000406 ORTHO05D006918 2.0e-18 95.1 61 73.8
THA.LOC104827047 Tarenaya hassleriana HOM05D000406 ORTHO05D006918 2.0e-18 95.1 61 73.8
ClCG10G022310 Citrullus lanatus HOM05D000406 ORTHO05D006918 2.6e-18 94.7 60 71.7
CsaV3_3G033570 Cucumis sativus L. HOM05D000406 ORTHO05D006918 2.6e-18 94.7 60 73.3
Thhalv10014166m.g Eutrema salsugineum HOM05D000406 ORTHO05D006918 2.6e-18 94.7 61 73.8
Lj2A71T59 Lonicera japonica HOM05D000406 ORTHO05D006918 2.6e-18 94.7 60 71.7
Prupe.6G280400 Prunus persica HOM05D000406 ORTHO05D006918 2.6e-18 94.7 61 73.8
MELO3C009147.2 Cucumis melo HOM05D000406 ORTHO05D006918 3.4e-18 94.4 60 71.7
Glyma.02G211700 Glycine max HOM05D000406 ORTHO05D006918 3.4e-18 94.4 61 72.1
MBI15_g07345_MAGBIO Magnolia biondii HOM05D000406 ORTHO05D006918 3.4e-18 94.4 60 70.0
MD12G1172100 Malus domestica HOM05D000406 ORTHO05D006918 4.5e-18 94.0 61 72.1
CAN.G243.19 Capsicum annuum HOM05D000406 ORTHO05D006918 5.9e-18 93.6 60 68.3
AUR62030475 Chenopodium quinoa HOM05D000406 ORTHO05D006918 5.9e-18 93.6 60 68.3
AUR62030821 Chenopodium quinoa HOM05D000406 ORTHO05D006918 5.9e-18 93.6 60 68.3
Nn2g10896 Nelumbo nucifera HOM05D000406 ORTHO05D006918 5.9e-18 93.6 60 71.7
SEGI_05711 Sequoiadendron giganteum HOM05D000406 ORTHO05D006918 5.9e-18 93.6 62 71.0
CDE12G0752 Ceratophyllum demersum HOM05D000406 ORTHO05D006918 1.0e-17 92.8 60 68.3
HanXRQChr16g0521221 Helianthus annuus HOM05D000406 ORTHO05D006918 1.0e-17 92.8 61 73.8
MD00G1062100 Malus domestica HOM05D000406 ORTHO05D006918 1.0e-17 92.8 61 72.1
unitig_699.g19378 Utricularia gibba HOM05D000406 ORTHO05D006918 1.0e-17 92.8 60 68.3
BcaB01g06224 Brassica carinata HOM05D000406 ORTHO05D006918 1.3e-17 92.4 61 70.5
A03p00350 Brassica napus HOM05D000406 ORTHO05D006918 1.3e-17 92.4 61 70.5
BraA03t09426Z Brassica rapa HOM05D000406 ORTHO05D006918 1.3e-17 92.4 61 70.5
DCAR_028863 Daucus carota HOM05D000406 ORTHO05D006918 1.3e-17 92.4 60 70.0
Rhsim05G0217500 Rhododendron simsii HOM05D003030 ORTHO05D003610 1.3e-17 92.4 61 72.1
Zm00001eb013460 Zea mays HOM05D000406 ORTHO05D006918 1.3e-17 92.4 60 73.3
Os03g0292200 Oryza sativa ssp. japonica HOM05D000406 ORTHO05D006918 1.7e-17 92.0 60 71.7
PSO384G4971 Papaver somniferum HOM05D000406 ORTHO05D006918 1.7e-17 92.0 60 66.7
Peaxi162Scf00009g01535 Petunia axillaris HOM05D000406 ORTHO05D006918 1.7e-17 92.0 60 68.3
SalBow5G0195 Salvia bowleyana HOM05D000406 ORTHO05D006918 1.7e-17 92.0 60 73.3
SalBow5G2160 Salvia bowleyana HOM05D000406 ORTHO05D006918 1.7e-17 92.0 60 73.3
Nitab4.5_0004107g0020 Nicotiana tabacum HOM05D000406 ORTHO05D006918 2.2e-17 91.7 60 68.3
EL10Ac5g12535 Beta vulgaris HOM05D000406 ORTHO05D006918 2.9e-17 91.3 60 66.7
C03p00510 Brassica napus HOM05D000406 ORTHO05D006918 2.9e-17 91.3 61 68.9
BolC3t12617H Brassica oleracea HOM05D000406 ORTHO05D006918 2.9e-17 91.3 61 68.9
Sp6g40650 Schrenkiella parvula HOM05D000406 ORTHO05D006918 2.9e-17 91.3 61 70.5
Solyc10g085220.3 Solanum lycopersicum HOM05D000954 ORTHO05D006918 2.9e-17 91.3 60 68.3
Sopen10g034700 Solanum pennellii HOM05D000406 ORTHO05D006918 2.9e-17 91.3 60 68.3
Atru.chr1.3799 Acer truncatum HOM05D001027 ORTHO05D006918 3.8e-17 90.9 60 66.7
HanXRQChr08g0214861 Helianthus annuus HOM05D000406 ORTHO05D006918 3.8e-17 90.9 60 70.0
PGSC0003DMG400011025 Solanum tuberosum HOM05D000406 ORTHO05D006918 3.8e-17 90.9 60 68.3
vmacro20297 Vaccinium macrocarpon HOM05D000406 ORTHO05D006918 5.0e-17 90.5 61 72.1
Aqoxy4G02494 Aquilegia oxysepala HOM05D000406 ORTHO05D006918 8.5e-17 89.7 60 66.7
AL6G10800 Arabidopsis lyrata HOM05D000406 ORTHO05D006918 1.1e-16 89.4 61 67.2
AT5G01340 Arabidopsis thaliana HOM05D000406 ORTHO05D006918 1.1e-16 89.4 61 67.2
CARHR211700 Cardamine hirsuta HOM05D000406 ORTHO05D006918 1.1e-16 89.4 61 67.2
PSO339G5837 Papaver somniferum HOM05D000406 ORTHO05D006918 1.1e-16 89.4 60 65.0
HPP92_012032 Vanilla planifolia HOM05D000406 ORTHO05D006918 1.1e-16 89.4 60 66.7
Rhsim04G0104200 Rhododendron simsii HOM05D000406 ORTHO05D006918 2.5e-16 88.2 60 68.3
Carub.0006s0048 Capsella rubella HOM05D000406 ORTHO05D006918 3.2e-16 87.8 61 65.6
Pp3c11_24700 Physcomitrium patens HOM05D000406 ORTHO05D006918 3.2e-16 87.8 61 68.9
Aa31LG1G23000 Aethionema arabicum HOM05D000406 ORTHO05D006918 4.2e-16 87.4 61 65.6
Migut.J00136 Erythranthe guttata HOM05D000406 ORTHO05D006918 5.5e-16 87.0 61 67.2
HanXRQChr09g0253721 Helianthus annuus HOM05D000406 ORTHO05D006918 1.0e-14 82.8 60 65.0
Pp3c3_25290 Physcomitrium patens HOM05D000406 ORTHO05D006918 5.1e-14 80.5 62 58.1
SMO356G0213 Selaginella moellendorffii HOM05D000406 ORTHO05D006918 8.7e-14 79.7 60 65.0
Gohir.D09G171650 Gossypium hirsutum HOM05D000406 ORTHO05D006918 1.5e-13 79.0 48 75.0
Gorai.006G193400 Gossypium raimondii HOM05D000406 ORTHO05D006918 1.5e-13 79.0 48 75.0
SMO002G0006 Selaginella moellendorffii HOM05D000406 ORTHO05D006918 1.9e-13 78.6 60 63.3
Mapoly0001s0082 Marchantia polymorpha HOM05D000406 ORTHO05D006918 2.6e-10 68.2 65 53.8
Cre06.g260200 Chlamydomonas reinhardtii HOM05D000406 ORTHO05D006918 7.2e-08 60.1 60 43.3
Ah.12g058850 Amaranthus hybridus HOM05D000406 ORTHO05D006918 1.2e-07 59.3 36 69.4
PRCOL_00000280 Prasinoderma coloniale HOM05D000406 ORTHO05D006918 3.9e-06 54.3 60 45.0


User provided reference genes

Program Settings