Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.3e-48 196.1 100 100.0
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.9e-39 165.6 101 84.2
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 3.4e-36 154.8 99 80.8
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 4.0e-29 131.3 97 70.1
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 1.2e-28 129.8 99 72.7
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 5.4e-26 120.9 99 71.7
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.6e-25 119.4 103 62.1
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 1.3e-24 116.3 99 64.6
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 1.3e-24 116.3 99 64.6
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 8.7e-24 113.6 98 66.3
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 2.5e-23 112.1 88 64.8
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 9.6e-23 110.2 98 62.2
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.3e-22 109.8 103 63.1
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 2.1e-22 109.0 100 60.0
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 2.8e-22 108.6 96 59.4
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 3.6e-22 108.2 98 65.3
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 4.8e-22 107.8 97 60.8
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 8.1e-22 107.1 103 62.1
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 1.1e-21 106.7 98 59.2
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 1.1e-21 106.7 85 65.9
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 1.1e-21 106.7 89 65.2
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 2.4e-21 105.5 92 58.7
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 4.0e-21 104.8 106 59.4
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 4.0e-21 104.8 96 64.6
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 9.0e-21 103.6 99 56.6
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 1.2e-20 103.2 91 63.7
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.5e-20 102.8 98 60.2
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 5.8e-20 100.9 86 64.0
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 5.8e-20 100.9 97 56.7
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 5.8e-20 100.9 96 59.4
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 7.6e-20 100.5 94 58.5
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 9.9e-20 100.1 106 61.3
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 2.2e-19 99.0 100 58.0
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 8.4e-19 97.1 97 58.8
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 1.4e-18 96.3 69 71.0
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 1.4e-18 96.3 104 57.7
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 5.4e-18 94.4 94 55.3
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 7.1e-18 94.0 95 53.7
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 9.3e-18 93.6 98 54.1
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 1.6e-17 92.8 100 55.0
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 2.7e-17 92.0 99 55.6
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 6.0e-17 90.9 98 52.0
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 7.9e-17 90.5 94 53.2
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 1.0e-16 90.1 94 53.2
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 1.0e-16 90.1 97 57.7
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 1.1e-15 86.7 97 49.5
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 3.3e-15 85.1 99 54.5
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 3.3e-15 85.1 99 54.5
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 3.3e-15 85.1 98 53.1
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 5.6e-15 84.3 99 52.5
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 5.6e-15 84.3 96 53.1
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 9.6e-15 83.6 100 50.0
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 1.3e-14 83.2 97 52.6
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.6e-14 82.8 101 56.4
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 1.6e-14 82.8 101 56.4
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 2.8e-14 82.0 98 52.0
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 6.2e-14 80.9 99 52.5
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 1.1e-13 80.1 88 52.3
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 1.4e-13 79.7 98 51.0
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 5.3e-13 77.8 97 47.4
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 6.9e-13 77.4 80 51.2
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 9.0e-13 77.0 99 49.5
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 9.0e-13 77.0 99 50.5
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 9.0e-13 77.0 85 52.9
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 1.2e-12 76.6 97 47.4
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.5e-12 76.3 99 48.5
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 1.5e-12 76.3 96 46.9
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 7.6e-12 73.9 93 51.6
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 7.6e-12 73.9 98 48.0
C04p10180 Brassica napus HOM05D009505 ORTHO05D007552 1.3e-11 73.2 87 49.4
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 1.3e-11 73.2 96 47.9
BraA05t19787Z Brassica rapa HOM05D009505 ORTHO05D007552 2.9e-11 72.0 87 48.3
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 6.5e-11 70.9 86 48.8
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 6.5e-11 70.9 87 48.3
BolC4t28121H Brassica oleracea HOM05D009505 ORTHO05D007552 8.4e-11 70.5 92 45.7
BcaC02g07493 Brassica carinata HOM05D009505 ORTHO05D007552 1.9e-10 69.3 92 44.6
C04p66190 Brassica napus HOM05D009505 ORTHO05D007552 1.9e-10 69.3 92 44.6
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 2.5e-10 68.9 96 43.8
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 3.2e-10 68.6 97 45.4
BcaB02g09253 Brassica carinata HOM05D009505 ORTHO05D007552 4.2e-10 68.2 87 47.1
BcaB02g09254 Brassica carinata HOM05D009505 ORTHO05D007552 4.2e-10 68.2 87 47.1
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 7.1e-10 67.4 100 46.0
Sp4g20120 Schrenkiella parvula HOM05D009505 ORTHO05D007552 7.1e-10 67.4 92 43.5
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 7.1e-10 67.4 104 46.2
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 7.1e-10 67.4 104 46.2
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 9.3e-10 67.0 103 43.7
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 2.1e-09 65.9 97 42.3
BcaB06g29026 Brassica carinata HOM05D009505 ORTHO05D007552 4.6e-09 64.7 90 44.4
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 6.0e-09 64.3 93 43.0
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 7.9e-09 63.9 87 44.8
Aa31sc218G10 Aethionema arabicum HOM05D009505 ORTHO05D007552 1.3e-08 63.2 89 44.9
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 1.3e-08 63.2 96 42.7
BcaC01g05595 Brassica carinata HOM05D009505 ORTHO05D007552 1.8e-08 62.8 92 44.6
BcaC01g05596 Brassica carinata HOM05D009505 ORTHO05D007552 1.8e-08 62.8 92 44.6
C03p24490 Brassica napus HOM05D009505 ORTHO05D007552 1.8e-08 62.8 92 44.6
BolC3t14847H Brassica oleracea HOM05D009505 ORTHO05D007552 1.8e-08 62.8 92 44.6
MBI14_g13884_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 3.9e-08 61.6 70 55.7
THA.LOC104824525 Tarenaya hassleriana HOM05D009505 ORTHO05D007552 3.9e-08 61.6 91 46.2
BcaB01g03759 Brassica carinata HOM05D009505 ORTHO05D007552 5.1e-08 61.2 92 41.3
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 5.1e-08 61.2 100 43.0
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 5.1e-08 61.2 93 39.8
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 5.1e-08 61.2 48 58.3
CARHR131780 Cardamine hirsuta HOM05D009505 ORTHO05D007552 6.7e-08 60.8 89 43.8
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 6.7e-08 60.8 107 43.0
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 8.7e-08 60.5 76 52.6
A05p08210 Brassica napus HOM05D009505 ORTHO05D007552 1.5e-07 59.7 87 42.5
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 1.5e-07 59.7 85 43.5
SalBow5G2190 Salvia bowleyana HOM05D007574 ORTHO05D007552 2.5e-07 58.9 49 57.1
A04p28920 Brassica napus HOM05D009505 ORTHO05D007552 3.3e-07 58.5 92 41.3
BraA04t18368Z Brassica rapa HOM05D009505 ORTHO05D007552 3.3e-07 58.5 92 41.3
Ciclev10027461m.g Citrus clementina HOM05D007574 ORTHO05D007552 4.3e-07 58.2 99 43.4
Lsat_1_v5_gn_6_117001 Lactuca sativa HOM05D007574 ORTHO05D007552 7.4e-07 57.4 73 53.4
AL4G34680 Arabidopsis lyrata HOM05D009505 ORTHO05D007552 9.6e-07 57.0 97 40.2
Thecc.09G313900 Theobroma cacao HOM05D007574 ORTHO05D007552 2.8e-06 55.5 79 43.0
COL.COLO4_18585 Corchorus olitorius HOM05D007574 ORTHO05D007552 3.7e-06 55.1 87 40.2
Thhalv10015172m.g Eutrema salsugineum HOM05D009057 ORTHO05D011698 3.7e-06 55.1 75 46.7
BcaC02g11900 Brassica carinata HOM05D009505 ORTHO05D007552 6.2e-06 54.3 61 50.8
BcaC02g11902 Brassica carinata HOM05D009505 ORTHO05D007552 6.2e-06 54.3 61 50.8
BolC4t22617H Brassica oleracea HOM05D009505 ORTHO05D007552 6.2e-06 54.3 61 50.8


User provided reference genes

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