Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G093900 Populus trichocarpa HOM05D011447 ORTHO05D010069 9.7e-74 280.0 139 100.0
Potri.013G043800 Populus trichocarpa HOM05D011447 ORTHO05D010069 1.1e-61 240.0 125 95.2
Sabra13G0040600 Salix brachista HOM05D011447 ORTHO05D010069 4.3e-53 211.5 127 82.7
Potri.019G013300 Populus trichocarpa HOM05D011447 ORTHO05D010069 8.1e-36 154.1 127 65.4
Potri.019G013750 Populus trichocarpa HOM05D011447 ORTHO05D010069 1.8e-35 152.9 128 66.4
Sabra19G0016900 Salix brachista HOM05D011447 ORTHO05D010069 1.4e-27 126.7 115 62.6
Sabra19G0026300 Salix brachista HOM05D011447 ORTHO05D010069 1.4e-27 126.7 115 62.6
Sabra19G0016700 Salix brachista HOM05D011447 ORTHO05D010069 1.6e-23 113.2 94 67.0
Sabra19G0026400 Salix brachista HOM05D011447 ORTHO05D010069 2.3e-22 109.4 94 66.0
Sabra19G0016800 Salix brachista HOM05D001365 ORTHO05D010069 1.5e-21 106.7 124 52.4
Manes.08G137100 Manihot esculenta HOM05D011447 ORTHO05D010069 8.1e-20 100.9 129 48.1
Manes.08G137000 Manihot esculenta HOM05D011447 ORTHO05D010069 1.4e-16 90.1 126 49.2
Manes.09G150100 Manihot esculenta HOM05D011447 ORTHO05D010069 7.1e-16 87.8 132 43.9
Dinv05728 Davidia involucrata HOM05D009218 ORTHO05D010069 3.0e-14 82.4 113 45.1
Cpa.g.sc162.8 Carica papaya HOM05D009218 ORTHO05D010069 3.6e-12 75.5 115 44.3
COL.COLO4_15410 Corchorus olitorius HOM05D009218 ORTHO05D010069 5.3e-11 71.6 116 41.4
QL03p028391 Quercus lobata HOM05D011447 ORTHO05D010069 5.3e-11 71.6 98 45.9
QL03p029028 Quercus lobata HOM05D011447 ORTHO05D010069 5.3e-11 71.6 98 45.9
Rhsim05G0175900 Rhododendron simsii HOM05D009218 ORTHO05D010069 5.3e-11 71.6 66 54.5
QL03p028359 Quercus lobata HOM05D009218 ORTHO05D010069 1.5e-10 70.1 82 50.0
QL03p029061 Quercus lobata HOM05D009218 ORTHO05D010069 1.5e-10 70.1 82 50.0
Thecc.05G277300 Theobroma cacao HOM05D009218 ORTHO05D010069 3.4e-10 68.9 62 61.3
PGR004G0279 Punica granatum HOM05D011447 ORTHO05D010069 4.4e-10 68.6 95 53.7
Sed0020224 Sechium edule HOM05D009218 ORTHO05D010069 9.9e-10 67.4 115 37.4
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.7e-09 66.6 110 40.9
Ciclev10022688m.g Citrus clementina HOM05D009218 ORTHO05D010069 2.9e-09 65.9 115 39.1
Gorai.013G186400 Gossypium raimondii HOM05D009218 ORTHO05D010069 4.9e-09 65.1 107 41.1
Eucgr.H04261 Eucalyptus grandis HOM05D009218 ORTHO05D010069 8.4e-09 64.3 112 42.9
Atru.chr2.882 Acer truncatum HOM05D009218 ORTHO05D010069 1.9e-08 63.2 49 63.3
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 3.2e-08 62.4 139 33.8
Sc20g0000500 Simmondsia chinensis HOM05D009218 ORTHO05D010069 3.2e-08 62.4 85 45.9
Sed0017066 Sechium edule HOM05D009218 ORTHO05D010069 5.4e-08 61.6 74 50.0
Gohir.A13G168950 Gossypium hirsutum HOM05D009218 ORTHO05D010069 9.3e-08 60.8 107 39.3
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 9.3e-08 60.8 100 41.0
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 1.6e-07 60.1 71 47.9
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.6e-07 60.1 56 53.6
ClCG02G016900 Citrullus lanatus HOM05D009218 ORTHO05D010069 2.7e-07 59.3 72 50.0
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.7e-07 59.3 95 40.0
ClCG02G016910 Citrullus lanatus HOM05D009218 ORTHO05D010069 3.5e-07 58.9 70 48.6
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 3.5e-07 58.9 50 64.0
Prupe.6G347000 Prunus persica HOM05D009218 ORTHO05D010069 4.6e-07 58.5 72 51.4
SHI31328 Sapria himalayana HOM05D011447 ORTHO05D010069 6.0e-07 58.2 71 52.1
CsaV3_2G003860 Cucumis sativus L. HOM05D009218 ORTHO05D010069 7.9e-07 57.8 40 67.5
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 7.9e-07 57.8 88 40.9
Nn3g19575 Nelumbo nucifera HOM05D011447 ORTHO05D010069 7.9e-07 57.8 99 41.4
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 7.9e-07 57.8 50 62.0
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 1.7e-06 56.6 55 54.5
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.7e-06 56.6 50 58.0
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.7e-06 56.6 112 38.4
CiPaw.07G070100 Carya illinoinensis HOM05D009218 ORTHO05D010069 2.3e-06 56.2 69 50.7
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 2.3e-06 56.2 50 60.0
Glyma.19G246700 Glycine max HOM05D020401 ORTHO05D010069 2.3e-06 56.2 73 49.3
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 3.0e-06 55.8 71 47.9
CAN.G1465.2 Capsicum annuum HOM05D011340 ORTHO05D010069 3.0e-06 55.8 36 75.0
MELO3C004409.2 Cucumis melo HOM05D009218 ORTHO05D010069 3.0e-06 55.8 40 65.0
FAN02G3090 Fragaria x ananassa HOM05D009218 ORTHO05D010069 3.9e-06 55.5 84 44.0
FAN09G2898 Fragaria x ananassa HOM05D009218 ORTHO05D010069 3.9e-06 55.5 84 44.0
Glyma.03G249100 Glycine max HOM05D020401 ORTHO05D010069 3.9e-06 55.5 54 55.6
Gohir.D13G174325 Gossypium hirsutum HOM05D009218 ORTHO05D010069 3.9e-06 55.5 46 65.2
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 3.9e-06 55.5 50 60.0
RcHm_v2.0_Chr3g0450331 Rosa chinensis HOM05D009218 ORTHO05D010069 3.9e-06 55.5 81 46.9
CiPaw.07G070200 Carya illinoinensis HOM05D009218 ORTHO05D010069 5.1e-06 55.1 61 49.2
FAN05G0115 Fragaria x ananassa HOM05D009218 ORTHO05D010069 5.1e-06 55.1 84 44.0
FAN05G4900 Fragaria x ananassa HOM05D009218 ORTHO05D010069 5.1e-06 55.1 84 44.0
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 5.1e-06 55.1 50 58.0
Sed0021944 Sechium edule HOM05D009218 ORTHO05D010069 6.6e-06 54.7 43 62.8
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 6.6e-06 54.7 52 57.7
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 8.7e-06 54.3 50 56.0
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 8.7e-06 54.3 49 57.1
Phvul.006G103800 Phaseolus vulgaris HOM05D020401 ORTHO05D010069 8.7e-06 54.3 38 68.4
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 8.7e-06 54.3 63 54.0


User provided reference genes

Program Settings