Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 9.4e-56 219.9 109 100.0
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 2.3e-46 188.7 109 85.3
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 3.0e-38 161.8 102 74.5
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 4.0e-38 161.4 103 75.7
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 4.0e-38 161.4 104 74.0
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 5.2e-38 161.0 109 69.7
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 6.7e-38 160.6 109 69.7
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 6.7e-38 160.6 109 69.7
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 1.2e-37 159.8 109 69.7
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.2e-37 159.8 109 69.7
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 1.2e-37 159.8 105 72.4
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 1.5e-37 159.5 104 71.2
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 1.5e-37 159.5 102 73.5
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.5e-37 159.5 109 69.7
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 2.0e-37 159.1 102 74.5
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 2.0e-37 159.1 104 73.1
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 2.6e-37 158.7 109 68.8
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 3.3e-37 158.3 105 71.4
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 4.4e-37 157.9 102 72.5
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 5.7e-37 157.5 102 73.5
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 5.7e-37 157.5 109 67.9
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 7.5e-37 157.1 109 67.0
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 7.5e-37 157.1 105 70.5
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 1.3e-36 156.4 102 72.5
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 1.3e-36 156.4 103 70.9
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 1.7e-36 156.0 101 74.3
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 2.2e-36 155.6 102 71.6
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 2.2e-36 155.6 103 72.8
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 2.2e-36 155.6 102 70.6
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 3.7e-36 154.8 106 70.8
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 3.7e-36 154.8 103 70.9
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 4.8e-36 154.5 106 70.8
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 4.8e-36 154.5 102 70.6
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 4.8e-36 154.5 105 71.4
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 6.3e-36 154.1 100 74.0
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 8.2e-36 153.7 103 69.9
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 8.2e-36 153.7 101 71.3
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 8.2e-36 153.7 99 71.7
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 1.1e-35 153.3 103 69.9
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 1.1e-35 153.3 106 69.8
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 1.1e-35 153.3 103 71.8
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 1.1e-35 153.3 109 67.9
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 1.4e-35 152.9 103 69.9
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 1.8e-35 152.5 106 69.8
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 1.8e-35 152.5 102 69.6
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 1.8e-35 152.5 105 68.6
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 1.8e-35 152.5 107 71.0
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 2.4e-35 152.1 103 68.9
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 2.4e-35 152.1 103 68.9
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 2.4e-35 152.1 100 72.0
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 2.4e-35 152.1 93 78.5
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 3.1e-35 151.8 105 70.5
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 4.1e-35 151.4 102 68.6
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 4.1e-35 151.4 100 72.0
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 4.1e-35 151.4 106 68.9
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 5.3e-35 151.0 105 68.6
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 5.3e-35 151.0 100 73.0
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 7.0e-35 150.6 105 69.5
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 9.1e-35 150.2 103 72.8
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 1.2e-34 149.8 105 65.7
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 1.2e-34 149.8 104 66.3
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 1.2e-34 149.8 104 66.3
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 1.6e-34 149.4 101 72.3
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 1.6e-34 149.4 105 68.6
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 2.7e-34 148.7 105 68.6
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 2.7e-34 148.7 102 67.6
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 2.7e-34 148.7 102 67.6
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 3.5e-34 148.3 105 70.5
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 4.5e-34 147.9 103 69.9
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 5.9e-34 147.5 104 65.4
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 5.9e-34 147.5 103 69.9
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 5.9e-34 147.5 105 67.6
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 7.7e-34 147.1 104 67.3
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 1.0e-33 146.7 107 69.2
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 1.3e-33 146.4 105 67.6
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 2.9e-33 145.2 101 66.3
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 3.8e-33 144.8 103 66.0
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 5.0e-33 144.4 109 64.2
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 6.5e-33 144.1 78 91.0
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 6.5e-33 144.1 106 66.0
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 8.5e-33 143.7 100 68.0
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 8.5e-33 143.7 103 65.0
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 1.5e-32 142.9 103 66.0
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 1.9e-32 142.5 105 66.7
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 1.9e-32 142.5 103 65.0
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 3.2e-32 141.7 107 66.4
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 5.5e-32 141.0 105 62.9
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 9.4e-32 140.2 105 63.8
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 1.6e-31 139.4 105 62.9
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 1.6e-31 139.4 105 63.8
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 1.0e-30 136.7 105 63.8
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 1.8e-30 136.0 105 63.8
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 1.8e-30 136.0 105 63.8
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 1.8e-30 136.0 107 61.7
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 2.3e-30 135.6 93 67.7
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 3.4e-29 131.7 101 58.4
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 1.7e-28 129.4 103 55.3
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 2.2e-28 129.0 102 62.7
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 3.7e-28 128.3 105 60.0
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 3.7e-28 128.3 102 61.8
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 3.7e-28 128.3 130 51.5
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 4.8e-28 127.9 103 54.4
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 6.3e-28 127.5 105 61.0
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 1.8e-27 125.9 102 58.8
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 1.2e-26 123.2 129 50.4
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 1.6e-26 122.9 91 62.6
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 2.0e-26 122.5 107 55.1
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 3.8e-25 118.2 101 54.5
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 6.5e-25 117.5 99 56.6
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 1.9e-24 115.9 75 74.7
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 7.2e-24 114.0 89 60.7
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 7.2e-24 114.0 95 53.7
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 9.5e-24 113.6 105 52.4
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 9.5e-24 113.6 74 75.7
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 1.6e-23 112.8 90 55.6
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 2.8e-23 112.1 107 56.1
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 5.2e-22 107.8 98 54.1
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 8.9e-22 107.1 75 66.7
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 1.2e-21 106.7 74 68.9
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 4.4e-21 104.8 83 63.9
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 5.7e-21 104.4 68 76.5
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 5.7e-21 104.4 68 76.5
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 7.0e-19 97.4 105 50.5
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 7.0e-19 97.4 113 49.6
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 1.2e-18 96.7 99 48.5
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 4.5e-18 94.7 82 54.9
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 7.8e-18 94.0 99 54.5
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 1.9e-16 89.4 68 60.3
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 3.4e-13 78.6 48 79.2
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 1.9e-11 72.8 76 53.9
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 4.6e-10 68.2 45 62.2
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 2.3e-09 65.9 88 36.4
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 4.3e-08 61.6 51 62.7
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 1.4e-06 56.6 42 52.4


User provided reference genes

Program Settings