Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 2.4e-182 642.1 342 100.0
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 1.8e-84 317.0 246 77.2
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 6.9e-81 305.1 246 75.6
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 1.0e-44 184.9 243 56.8
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 9.8e-43 178.3 235 51.1
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 4.4e-35 152.9 255 47.8
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 5.8e-35 152.5 246 46.3
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 7.0e-33 145.6 225 48.0
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 7.0e-33 145.6 238 47.9
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.2e-32 144.8 219 49.3
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 1.2e-32 144.8 215 52.6
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 3.5e-32 143.3 243 46.1
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 1.7e-31 141.0 254 45.3
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 9.5e-30 135.2 245 46.1
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 1.2e-29 134.8 233 44.6
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 3.6e-29 133.3 230 46.1
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.1e-28 131.7 222 45.5
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.3e-28 130.6 236 42.4
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 5.8e-27 125.9 252 40.5
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 4.9e-26 122.9 233 42.9
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 1.1e-25 121.7 257 40.5
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.4e-25 121.3 236 40.3
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.4e-25 121.3 256 40.2
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.9e-25 120.9 228 43.4
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 4.1e-25 119.8 252 43.3
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 7.8e-24 115.5 228 42.1
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 7.8e-24 115.5 222 44.6
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.9e-22 110.9 222 41.4
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 3.3e-22 110.2 147 52.4
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 3.3e-22 110.2 114 61.4
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 3.3e-22 110.2 228 44.7
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 4.3e-22 109.8 225 39.1
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.3e-22 109.8 259 38.6
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 5.6e-22 109.4 249 38.2
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 7.3e-22 109.0 153 48.4
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.6e-21 107.8 220 40.9
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 4.7e-21 106.3 222 40.5
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 4.7e-21 106.3 219 41.6
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 1.1e-20 105.1 158 46.2
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 1.4e-20 104.8 147 50.3
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 1.8e-20 104.4 237 37.6
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 3.1e-20 103.6 214 41.6
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 6.8e-20 102.4 247 37.7
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 2.0e-19 100.9 138 54.3
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 2.6e-19 100.5 233 38.2
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 2.6e-19 100.5 226 37.2
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 4.4e-19 99.8 188 43.6
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 7.6e-19 99.0 258 38.8
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 7.6e-19 99.0 240 38.8
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 7.6e-19 99.0 218 41.7
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 2.9e-18 97.1 216 41.7
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 8.4e-18 95.5 186 41.9
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 8.4e-18 95.5 186 41.9
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 1.1e-17 95.1 215 38.1
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 1.9e-17 94.4 222 39.2
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 2.4e-17 94.0 146 47.3
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 2.4e-17 94.0 96 60.4
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 3.2e-17 93.6 87 63.2
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 4.2e-17 93.2 181 40.9
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 4.2e-17 93.2 225 39.1
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 5.4e-17 92.8 226 38.1
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 7.1e-17 92.4 152 43.4
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 7.1e-17 92.4 162 45.7
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 9.2e-17 92.0 224 40.6
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 9.2e-17 92.0 164 45.1
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 1.6e-16 91.3 100 58.0
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 2.1e-16 90.9 105 57.1
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 2.1e-16 90.9 240 34.6
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 3.5e-16 90.1 128 50.0
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 4.6e-16 89.7 127 48.0
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 6.0e-16 89.4 233 36.9
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 1.0e-15 88.6 151 45.0
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.0e-15 88.6 108 56.5
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 1.3e-15 88.2 141 46.8
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 1.7e-15 87.8 227 37.9
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 2.3e-15 87.4 75 68.0
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 3.0e-15 87.0 171 41.5
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 3.0e-15 87.0 105 58.1
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 3.0e-15 87.0 263 33.8
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 3.0e-15 87.0 274 38.0
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 3.9e-15 86.7 84 61.9
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 5.1e-15 86.3 185 42.7
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 5.1e-15 86.3 162 45.1
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 6.6e-15 85.9 241 35.3
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 8.7e-15 85.5 234 35.9
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 1.1e-14 85.1 162 44.4
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 2.5e-14 84.0 164 40.9
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 4.3e-14 83.2 229 35.4
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 5.6e-14 82.8 73 64.4
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 5.6e-14 82.8 73 64.4
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 9.6e-14 82.0 154 40.9
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 1.2e-13 81.6 211 40.3
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 3.6e-13 80.1 220 35.9
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 3.6e-13 80.1 104 54.8
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 4.7e-13 79.7 73 64.4
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 1.1e-12 78.6 249 36.1
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 1.4e-12 78.2 254 35.0
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 1.4e-12 78.2 70 65.7
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 1.8e-12 77.8 244 33.6
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 5.3e-12 76.3 64 68.8
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 6.9e-12 75.9 198 39.4
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 6.9e-12 75.9 268 35.4
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 6.9e-12 75.9 217 33.6
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 9.0e-12 75.5 64 67.2
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 9.0e-12 75.5 187 40.1
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 1.2e-11 75.1 143 39.9
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 1.2e-11 75.1 160 40.0
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 1.5e-11 74.7 151 39.7
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 4.4e-11 73.2 220 35.5
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 5.8e-11 72.8 136 46.3
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 1.3e-10 71.6 211 35.5
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 8.4e-10 68.9 170 38.8
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 1.1e-09 68.6 158 38.0
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 1.9e-09 67.8 224 32.1
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 1.9e-09 67.8 261 34.9
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 3.2e-09 67.0 184 38.0
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 5.4e-09 66.2 67 61.2
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 5.4e-09 66.2 246 33.3
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 1.6e-08 64.7 216 33.3
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 3.5e-08 63.5 188 38.3
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 7.8e-08 62.4 85 48.2
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.0e-07 62.0 194 33.5
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 1.3e-07 61.6 68 52.9
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 1.7e-07 61.2 239 33.5
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 1.7e-07 61.2 222 33.8
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 1.7e-07 61.2 50 64.0
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 1.7e-07 61.2 218 30.3
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 3.0e-07 60.5 68 51.5
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 3.0e-07 60.5 225 33.8
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 3.0e-07 60.5 196 34.7
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 1.9e-06 57.8 211 30.3
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 4.3e-06 56.6 211 33.6
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 7.3e-06 55.8 199 32.7


User provided reference genes

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