Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 1.8e-110 402.5 197 100.0
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 1.7e-87 326.2 170 94.1
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 2.1e-77 292.7 181 82.3
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 6.9e-65 251.1 221 60.6
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 8.7e-60 234.2 180 64.4
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 1.1e-59 233.8 166 68.7
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 1.5e-59 233.4 174 66.7
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 3.3e-59 232.3 180 65.0
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 7.3e-59 231.1 181 66.3
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 1.3e-58 230.3 180 64.4
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 2.1e-58 229.6 178 66.9
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 3.6e-58 228.8 170 67.1
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 4.8e-58 228.4 180 62.8
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 1.8e-57 226.5 177 61.6
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 4.0e-57 225.3 166 68.1
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 5.3e-57 224.9 166 66.3
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 6.9e-57 224.6 180 62.2
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 2.0e-56 223.0 181 61.9
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 2.0e-56 223.0 180 61.7
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 2.0e-56 223.0 164 64.6
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 2.6e-56 222.6 195 61.5
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 9.9e-56 220.7 180 60.6
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 2.9e-55 219.2 170 62.9
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 4.9e-55 218.4 168 62.5
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 4.9e-55 218.4 180 60.6
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 7.1e-54 214.5 177 61.6
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 2.1e-53 213.0 214 52.3
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 3.5e-53 212.2 179 57.5
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 4.6e-53 211.8 172 62.8
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 4.6e-53 211.8 117 88.9
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 7.9e-53 211.1 232 50.4
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 7.9e-53 211.1 175 63.4
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 1.0e-52 210.7 177 59.9
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.3e-52 210.3 175 62.3
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.3e-52 210.3 175 62.9
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 1.3e-52 210.3 171 60.8
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 1.8e-52 209.9 177 60.5
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.9e-52 208.8 175 62.3
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 6.7e-52 208.0 179 59.2
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 8.7e-52 207.6 165 63.6
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 8.7e-52 207.6 179 57.5
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.1e-51 207.2 174 62.1
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 1.5e-51 206.8 177 59.3
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 2.5e-51 206.1 179 58.1
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 3.3e-51 205.7 177 62.7
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 5.6e-51 204.9 181 59.1
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 7.4e-51 204.5 177 59.3
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 9.6e-51 204.1 184 57.6
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 9.6e-51 204.1 178 59.0
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 1.3e-50 203.8 175 60.0
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.3e-50 203.8 170 60.6
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 1.6e-50 203.4 164 58.5
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 1.6e-50 203.4 178 58.4
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 3.7e-50 202.2 176 58.5
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 4.8e-50 201.8 189 52.4
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 4.8e-50 201.8 182 56.0
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 4.8e-50 201.8 220 50.9
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 6.2e-50 201.4 176 59.7
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 6.2e-50 201.4 176 59.7
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 8.1e-50 201.1 160 62.5
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 8.1e-50 201.1 182 57.7
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 1.1e-49 200.7 165 61.8
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 1.1e-49 200.7 179 57.5
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 2.4e-49 199.5 169 62.1
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 3.1e-49 199.1 169 59.8
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 5.3e-49 198.4 173 60.1
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 5.3e-49 198.4 170 62.4
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 6.9e-49 198.0 166 59.0
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 1.2e-48 197.2 181 56.9
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 2.6e-48 196.1 179 56.4
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 1.7e-47 193.4 176 56.8
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 4.9e-47 191.8 179 58.7
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 8.4e-47 191.0 173 56.1
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 1.1e-46 190.7 179 58.1
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 1.9e-46 189.9 177 57.1
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 1.9e-46 189.9 178 56.7
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 2.5e-46 189.5 176 53.4
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 2.5e-46 189.5 176 53.4
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 4.2e-46 188.7 167 58.7
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 5.5e-46 188.3 170 57.1
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.2e-45 187.2 171 55.6
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 1.6e-45 186.8 173 54.9
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 2.1e-45 186.4 163 58.9
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 2.7e-45 186.0 164 56.1
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 2.7e-45 186.0 164 56.1
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 2.7e-45 186.0 164 56.1
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 3.5e-45 185.7 173 55.5
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 6.0e-45 184.9 158 60.8
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 1.0e-44 184.1 168 54.8
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.0e-44 184.1 173 53.8
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 3.0e-44 182.6 165 55.2
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 8.7e-44 181.0 173 54.3
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 8.7e-44 181.0 156 57.1
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 2.5e-43 179.5 162 56.2
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 3.3e-43 179.1 156 57.7
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 9.6e-43 177.6 173 53.2
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 2.1e-42 176.4 143 65.0
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 2.1e-42 176.4 175 57.1
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 8.2e-42 174.5 172 52.3
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 5.3e-41 171.8 154 54.5
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 5.8e-40 168.3 158 53.2
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 7.6e-40 167.9 152 53.3
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.3e-39 167.2 114 69.3
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 1.7e-39 166.8 158 52.5
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 2.9e-39 166.0 159 54.7
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 8.4e-39 164.5 158 53.8
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 2.7e-37 159.5 157 52.9
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 2.7e-37 159.5 157 52.9
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 6.1e-37 158.3 146 54.8
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 3.9e-36 155.6 114 64.9
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 6.7e-36 154.8 164 49.4
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 1.1e-35 154.1 176 47.2
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 7.4e-35 151.4 152 51.3
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 6.9e-33 144.8 110 60.9
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 3.4e-32 142.5 177 46.9
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 4.5e-32 142.1 137 53.3
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 2.9e-31 139.4 135 52.6
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 2.5e-30 136.3 145 46.9
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 6.1e-29 131.7 141 48.2
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 6.1e-29 131.7 157 45.2
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 6.1e-29 131.7 181 42.0
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 1.8e-28 130.2 160 48.1
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 4.3e-27 125.6 181 38.1
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 9.7e-27 124.4 161 43.5
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 6.3e-26 121.7 169 39.6
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 3.1e-25 119.4 157 43.3
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 4.1e-25 119.0 180 36.7
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 4.5e-24 115.5 81 71.6
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.9e-23 112.8 81 70.4
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 1.2e-21 107.5 108 53.7
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 6.7e-20 101.7 56 91.1
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 1.5e-19 100.5 80 57.5
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 2.0e-16 90.1 147 34.0
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 7.7e-16 88.2 78 60.3
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 3.8e-15 85.9 95 47.4
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 3.0e-12 76.3 90 48.9
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 3.7e-10 69.3 83 48.2
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 4.1e-09 65.9 100 36.0
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 1.2e-08 64.3 168 26.2
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 1.2e-08 64.3 168 27.4
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 3.8e-07 59.3 139 30.2
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 6.5e-07 58.5 139 27.3
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 6.5e-07 58.5 172 24.4
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 1.1e-06 57.8 139 28.1
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 1.1e-06 57.8 139 28.1
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 1.1e-06 57.8 139 28.1
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 1.1e-06 57.8 156 25.0
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 1.5e-06 57.4 158 22.2
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 1.9e-06 57.0 140 25.7
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 1.9e-06 57.0 147 27.9
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 1.9e-06 57.0 156 24.4
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 2.5e-06 56.6 65 44.6
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 2.5e-06 56.6 139 28.1
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 2.5e-06 56.6 139 30.2
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 3.2e-06 56.2 140 25.7
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 4.2e-06 55.8 142 28.9
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 4.2e-06 55.8 142 28.9
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 4.2e-06 55.8 81 43.2
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 4.2e-06 55.8 139 25.2
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 4.2e-06 55.8 139 25.9
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 5.5e-06 55.5 139 28.8
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 7.2e-06 55.1 141 28.4
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 9.4e-06 54.7 158 27.8


User provided reference genes

Program Settings