Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G069632 Populus trichocarpa HOM05D002865 ORTHO05D331872 3.9e-52 208.0 114 100.0
Potri.006G202900 Populus trichocarpa HOM05D002865 ORTHO05D003289 5.6e-27 124.4 100 70.0
Sabra06G0156000 Salix brachista HOM05D002865 ORTHO05D003289 5.6e-27 124.4 100 69.0
QL07p036606 Quercus lobata HOM05D002865 ORTHO05D003289 1.4e-22 109.8 100 61.0
CiPaw.10G018000 Carya illinoinensis HOM05D002865 ORTHO05D003289 3.2e-22 108.6 100 60.0
Manes.09G045700 Manihot esculenta HOM05D002865 ORTHO05D003289 7.1e-22 107.5 100 59.0
MD12G1049200 Malus domestica HOM05D002865 ORTHO05D003289 4.6e-21 104.8 87 60.9
Prupe.7G094200 Prunus persica HOM05D002865 ORTHO05D003289 6.0e-21 104.4 87 60.9
Atru.chr8.1349 Acer truncatum HOM05D002865 ORTHO05D003289 1.0e-20 103.6 100 60.0
MD14G1048100 Malus domestica HOM05D002865 ORTHO05D003289 1.3e-20 103.2 87 59.8
Duzib093G2181 Durio zibethinus HOM05D002865 ORTHO05D003289 1.7e-20 102.8 100 59.0
Dinv12341 Davidia involucrata HOM05D002865 ORTHO05D003289 1.9e-19 99.4 100 54.0
Thecc.05G105100 Theobroma cacao HOM05D002865 ORTHO05D003289 2.5e-19 99.0 100 57.0
TAR369G0763 Trochodendron aralioides HOM05D002865 ORTHO05D003289 2.5e-19 99.0 100 55.0
Cpa.g.sc104.26 Carica papaya HOM05D002865 ORTHO05D003289 3.3e-19 98.6 99 56.6
Phvul.001G195900 Phaseolus vulgaris HOM05D002865 ORTHO05D003289 4.3e-19 98.2 100 54.0
VMungo1383G3695 Vigna mungo HOM05D002865 ORTHO05D003289 5.6e-19 97.8 100 54.0
CANSAT64G2938 Cannabis sativa HOM05D002865 ORTHO05D003289 7.3e-19 97.4 104 53.8
Lalb_Chr01g0017861 Lupinus albus HOM05D002865 ORTHO05D003289 1.6e-18 96.3 87 56.3
Glyma.19G199400 Glycine max HOM05D002865 ORTHO05D003289 2.8e-18 95.5 87 56.3
FvH4_6g20360 Fragaria vesca HOM05D002865 ORTHO05D003289 3.6e-18 95.1 88 58.0
FAN14G2618 Fragaria x ananassa HOM05D002865 ORTHO05D003289 3.6e-18 95.1 88 58.0
Glyma.03G202400 Glycine max HOM05D002865 ORTHO05D003289 3.6e-18 95.1 100 53.0
FAN09G3527 Fragaria x ananassa HOM05D002865 ORTHO05D003289 8.1e-18 94.0 88 58.0
Solyc01g007060.3 Solanum lycopersicum HOM05D002865 ORTHO05D003289 8.1e-18 94.0 88 52.3
Sopen01g003040 Solanum pennellii HOM05D002865 ORTHO05D003289 8.1e-18 94.0 88 52.3
FAN05G2473 Fragaria x ananassa HOM05D002865 ORTHO05D003289 1.1e-17 93.6 88 56.8
FAN05G2646 Fragaria x ananassa HOM05D002865 ORTHO05D003289 1.1e-17 93.6 88 56.8
RcHm_v2.0_Chr3g0475971 Rosa chinensis HOM05D002865 ORTHO05D003289 1.1e-17 93.6 101 54.5
arahy.Tifrunner.gnm1.ann1.0FNG65 Arachis hypogaea HOM05D002865 ORTHO05D003289 3.1e-17 92.0 87 54.0
Ciclev10011740m.g Citrus clementina HOM05D002865 ORTHO05D003289 3.1e-17 92.0 100 59.0
CAN.G574.4 Capsicum annuum HOM05D002865 ORTHO05D003289 4.0e-17 91.7 88 48.9
FAN02G0504 Fragaria x ananassa HOM05D002865 ORTHO05D003289 4.0e-17 91.7 88 55.7
Actinidia37749 Actinidia chinensis HOM05D002865 ORTHO05D003289 6.9e-17 90.9 86 55.8
Lj1g0018446 Lotus japonicus HOM05D002865 ORTHO05D003289 9.0e-17 90.5 100 48.0
Cfa020035 Carpinus fangiana HOM05D002865 ORTHO05D003289 1.2e-16 90.1 112 51.8
Peaxi162Scf00910g00220 Petunia axillaris HOM05D002865 ORTHO05D003289 1.2e-16 90.1 89 50.6
Sed0026465 Sechium edule HOM05D002865 ORTHO05D003289 1.2e-16 90.1 100 49.0
Hma1.2p1_0079F.1_g041773 Hydrangea macrophylla HOM05D002865 ORTHO05D003289 1.5e-16 89.7 100 50.0
Hma1.2p1_0079F.1_g041790 Hydrangea macrophylla HOM05D002865 ORTHO05D003289 1.5e-16 89.7 100 50.0
Nitab4.5_0000384g0010 Nicotiana tabacum HOM05D002865 ORTHO05D003289 1.5e-16 89.7 88 48.9
PGSC0003DMG400021355 Solanum tuberosum HOM05D002865 ORTHO05D003289 1.5e-16 89.7 88 50.0
Medtr7g106330 Medicago truncatula HOM05D002865 ORTHO05D003289 3.4e-16 88.6 82 53.7
Actinidia03995 Actinidia chinensis HOM05D002865 ORTHO05D003289 4.5e-16 88.2 73 60.3
COL.COLO4_29569 Corchorus olitorius HOM05D002865 ORTHO05D003289 1.3e-15 86.7 106 50.9
Haze_20175 Corylus avellana HOM05D002865 ORTHO05D003289 1.3e-15 86.7 112 47.3
MELO3C008785.2 Cucumis melo HOM05D002865 ORTHO05D003289 1.7e-15 86.3 100 50.0
AUR62036371 Chenopodium quinoa HOM05D002865 ORTHO05D003289 3.8e-15 85.1 87 51.7
Gorai.009G396800 Gossypium raimondii HOM05D002865 ORTHO05D003289 3.8e-15 85.1 100 48.0
AUR62030731 Chenopodium quinoa HOM05D002865 ORTHO05D003289 4.9e-15 84.7 87 51.7
Nitab4.5_0000077g0070 Nicotiana tabacum HOM05D002865 ORTHO05D003289 4.9e-15 84.7 88 51.1
Ca_09060_v3 Cicer arietinum L. HOM05D002865 ORTHO05D003289 6.4e-15 84.3 87 48.3
Rhsim10G0140600 Rhododendron simsii HOM05D002865 ORTHO05D003289 6.4e-15 84.3 100 44.0
ClCG04G005150 Citrullus lanatus HOM05D002865 ORTHO05D003289 8.4e-15 84.0 100 48.0
CsaV3_4G013470 Cucumis sativus L. HOM05D002865 ORTHO05D003289 8.4e-15 84.0 100 48.0
Gohir.A04G057700 Gossypium hirsutum HOM05D002865 ORTHO05D003289 8.4e-15 84.0 95 45.3
TPR.G31298 Trifolium pratense HOM05D002865 ORTHO05D003289 1.1e-14 83.6 86 48.8
Actinidia03886 Actinidia chinensis HOM05D002865 ORTHO05D003289 1.9e-14 82.8 74 59.5
MBI12_g10424_MAGBIO Magnolia biondii HOM05D002865 ORTHO05D003289 2.4e-14 82.4 100 46.0
Psat3g028440 Pisum sativum HOM05D002865 ORTHO05D003289 3.2e-14 82.0 87 47.1
Lsat_1_v5_gn_6_33500 Lactuca sativa HOM05D002865 ORTHO05D003289 4.2e-14 81.6 100 43.0
Nn6g34682 Nelumbo nucifera HOM05D002865 ORTHO05D003289 4.2e-14 81.6 100 46.0
CSS0009458 Camellia sinensis var. sinensis HOM05D002865 ORTHO05D003289 5.4e-14 81.3 86 53.5
HanXRQChr02g0053241 Helianthus annuus HOM05D002865 ORTHO05D003289 5.4e-14 81.3 90 45.6
Gohir.D04G091500 Gossypium hirsutum HOM05D002865 ORTHO05D003289 9.3e-14 80.5 100 47.0
BcaB04g19249 Brassica carinata HOM05D000005 ORTHO05D000449 1.2e-13 80.1 95 46.3
Aqoxy1G00651 Aquilegia oxysepala HOM05D002865 ORTHO05D003289 2.1e-13 79.3 100 43.0
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 2.1e-13 79.3 91 47.3
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 2.1e-13 79.3 91 47.3
Eucgr.A02587 Eucalyptus grandis HOM05D002865 ORTHO05D003289 2.7e-13 79.0 89 47.2
Sc01g0005360 Simmondsia chinensis HOM05D002865 ORTHO05D003289 6.0e-13 77.8 87 49.4
Carub.0003s0501 Capsella rubella HOM05D002865 ORTHO05D003289 1.0e-12 77.0 90 50.0
Oeu042076.1 Olea europaea HOM05D002865 ORTHO05D003289 1.0e-12 77.0 86 46.5
EL10Ac5g12973 Beta vulgaris HOM05D002865 ORTHO05D003289 1.3e-12 76.6 87 41.4
CARHR080120 Cardamine hirsuta HOM05D002865 ORTHO05D003289 1.3e-12 76.6 90 47.8
PSO384G1255 Papaver somniferum HOM05D002865 ORTHO05D003289 1.3e-12 76.6 90 46.7
vmacro12836 Vaccinium macrocarpon HOM05D002865 ORTHO05D003289 1.3e-12 76.6 100 46.0
AL3G16330 Arabidopsis lyrata HOM05D002865 ORTHO05D003289 3.0e-12 75.5 90 50.0
MSTRG.26606 Avicennia marina HOM05D002865 ORTHO05D003289 3.0e-12 75.5 88 44.3
Haze_20179 Corylus avellana HOM05D002865 ORTHO05D003289 1.9e-11 72.8 112 44.6
ECA233G4705 Erigeron canadensis HOM05D002865 ORTHO05D003289 1.9e-11 72.8 102 41.2
Cc06_g06610 Coffea canephora HOM05D002865 ORTHO05D003289 2.5e-11 72.4 73 46.6
PSO339G0847 Papaver somniferum HOM05D002865 ORTHO05D003289 2.5e-11 72.4 109 37.6
AT3G05675 Arabidopsis thaliana HOM05D002865 ORTHO05D003289 3.3e-11 72.0 90 55.6
TWI74G0042 Tripterygium wilfordii HOM05D002865 ORTHO05D003289 5.6e-11 71.2 100 44.0
CDE02G3339 Ceratophyllum demersum HOM05D002865 ORTHO05D003289 9.6e-11 70.5 84 39.3
SalBow5G2621 Salvia bowleyana HOM05D002865 ORTHO05D003289 1.6e-10 69.7 88 42.0
Thhalv10020747m.g Eutrema salsugineum HOM05D002865 ORTHO05D003289 3.6e-10 68.6 91 48.4
THA.LOC104816643 Tarenaya hassleriana HOM05D002865 ORTHO05D003289 4.8e-10 68.2 87 50.6
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 1.1e-09 67.0 91 51.6
BolC3t16448H Brassica oleracea HOM05D002865 ORTHO05D003289 1.1e-09 67.0 91 51.6
Lj3C422T5 Lonicera japonica HOM05D002865 ORTHO05D003289 1.4e-09 66.6 82 47.6
Sp3g04550 Schrenkiella parvula HOM05D002865 ORTHO05D003289 5.3e-09 64.7 94 50.0
Hund14962 Selenicereus undatus HOM05D002865 ORTHO05D003289 6.9e-09 64.3 101 43.6
Aa31LG5G16090 Aethionema arabicum HOM05D002865 ORTHO05D003289 2.0e-08 62.8 61 50.8
Zm00001eb378460 Zea mays HOM05D002865 ORTHO05D003289 4.9e-07 58.2 86 30.2
Ciclev10020226m.g Citrus clementina HOM05D002865 ORTHO05D003289 1.1e-06 57.0 108 34.3
Os07g0668800 Oryza sativa ssp. japonica HOM05D002865 ORTHO05D003289 1.1e-06 57.0 90 34.4
Zm00001eb320450 Zea mays HOM05D002865 ORTHO05D003289 1.1e-06 57.0 89 32.6
unitig_8.g4977 Utricularia gibba HOM05D002865 ORTHO05D003289 1.9e-06 56.2 90 38.9
Nn6g34681 Nelumbo nucifera HOM05D002865 ORTHO05D003289 5.5e-06 54.7 86 41.9
Nn6g34680 Nelumbo nucifera HOM05D002865 ORTHO05D003289 7.1e-06 54.3 58 48.3
unitig_578.g16357 Utricularia gibba HOM05D002865 ORTHO05D003289 7.1e-06 54.3 87 40.2


User provided reference genes

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