Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 3.0e-48 194.9 100 100.0
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 7.8e-33 143.7 88 86.4
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 3.1e-29 131.7 87 78.2
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 1.2e-28 129.8 77 84.4
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 5.1e-24 114.4 72 81.9
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 1.1e-23 113.2 87 70.1
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 1.6e-22 109.4 73 75.3
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 2.8e-22 108.6 98 61.2
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.4e-21 106.3 96 63.5
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.4e-21 106.3 93 65.6
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 2.4e-21 105.5 71 74.6
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 5.3e-21 104.4 88 65.9
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 5.3e-21 104.4 71 74.6
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 9.0e-21 103.6 74 73.0
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 9.0e-21 103.6 76 72.4
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 3.4e-20 101.7 96 58.3
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 3.4e-20 101.7 80 66.2
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 3.4e-20 101.7 84 66.7
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 5.8e-20 100.9 72 73.6
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 7.6e-20 100.5 73 72.6
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 7.6e-20 100.5 74 71.6
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 1.3e-19 99.8 77 64.9
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 2.9e-19 98.6 80 67.5
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 3.8e-19 98.2 76 68.4
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 3.8e-19 98.2 98 58.2
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 8.4e-19 97.1 95 61.1
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 1.1e-18 96.7 77 68.8
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 1.9e-18 95.9 87 59.8
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 3.2e-18 95.1 80 63.8
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 4.2e-18 94.7 97 58.8
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 5.4e-18 94.4 84 61.9
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 5.4e-18 94.4 87 58.6
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 5.4e-18 94.4 76 64.5
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 9.3e-18 93.6 73 68.5
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.2e-17 93.2 73 68.5
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 2.7e-17 92.0 95 54.7
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 2.7e-17 92.0 73 67.1
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 3.5e-17 91.7 77 62.3
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 3.5e-17 91.7 77 62.3
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 4.6e-17 91.3 67 73.1
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 6.0e-17 90.9 73 65.8
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 1.0e-16 90.1 86 60.5
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.0e-16 90.1 98 56.1
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.0e-16 90.1 77 62.3
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 1.0e-16 90.1 70 67.1
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 1.0e-16 90.1 72 65.3
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.3e-16 89.7 97 56.7
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.3e-16 89.7 97 56.7
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.3e-16 89.7 97 56.7
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 1.8e-16 89.4 70 67.1
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 1.8e-16 89.4 70 67.1
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 1.8e-16 89.4 70 67.1
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 1.8e-16 89.4 70 67.1
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 1.8e-16 89.4 70 67.1
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 1.8e-16 89.4 70 67.1
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 1.8e-16 89.4 70 65.7
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 2.3e-16 89.0 71 66.2
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 2.3e-16 89.0 79 59.5
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 2.3e-16 89.0 85 57.6
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 2.3e-16 89.0 97 56.7
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 2.3e-16 89.0 97 56.7
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 6.7e-16 87.4 79 58.2
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 8.7e-16 87.0 70 65.7
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 8.7e-16 87.0 81 61.7
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 1.1e-15 86.7 85 57.6
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 3.3e-15 85.1 81 58.0
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 3.3e-15 85.1 81 58.0
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 3.3e-15 85.1 83 56.6
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 4.3e-15 84.7 97 51.5
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 5.6e-15 84.3 85 54.1
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 5.6e-15 84.3 72 62.5
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 9.6e-15 83.6 78 57.7
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 1.3e-14 83.2 70 62.9
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 1.3e-14 83.2 70 62.9
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 1.3e-14 83.2 70 62.9
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 1.3e-14 83.2 74 66.2
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 4.8e-14 81.3 65 69.2
HPP92_013935 Vanilla planifolia HOM05D005113 ORTHO05D006045 1.1e-13 80.1 76 57.9
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 1.4e-13 79.7 81 51.9
AUR62036329 Chenopodium quinoa HOM05D005113 ORTHO05D006045 1.8e-13 79.3 64 64.1
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 1.8e-13 79.3 75 58.7
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 2.4e-13 79.0 75 61.3
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 3.1e-13 78.6 74 58.1
AUR62038432 Chenopodium quinoa HOM05D005113 ORTHO05D006045 1.5e-12 76.3 64 60.9
HPP92_012153 Vanilla planifolia HOM05D005113 ORTHO05D006045 2.6e-12 75.5 74 56.8
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 3.4e-12 75.1 78 52.6
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 7.6e-12 73.9 77 54.5
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 1.7e-11 72.8 95 47.4
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 2.9e-11 72.0 83 50.6
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 2.9e-11 72.0 78 52.6
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 2.9e-11 72.0 78 56.4
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 3.8e-11 71.6 77 51.9
Oeu045023.1 Olea europaea HOM05D005113 ORTHO05D006045 3.8e-11 71.6 70 58.6
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 8.4e-11 70.5 75 49.3
COL.COLO4_29500 Corchorus olitorius HOM05D005113 ORTHO05D006045 8.4e-11 70.5 83 51.8
Oeu044708.1 Olea europaea HOM05D005113 ORTHO05D006045 8.4e-11 70.5 70 61.4
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 1.4e-10 69.7 83 49.4
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 1.9e-10 69.3 111 38.7
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 4.2e-10 68.2 66 57.6
PGR004G1479 Punica granatum HOM05D005113 ORTHO05D006045 4.2e-10 68.2 82 52.4
arahy.Tifrunner.gnm1.ann1.TS08QV Arachis hypogaea HOM05D005113 ORTHO05D006045 5.5e-10 67.8 96 45.8
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 7.1e-10 67.4 81 48.1
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 1.2e-09 66.6 73 50.7
BcaC01g05698 Brassica carinata HOM05D005113 ORTHO05D006045 1.6e-09 66.2 81 49.4
BolC3t14709H Brassica oleracea HOM05D005113 ORTHO05D006045 1.6e-09 66.2 81 49.4
PGR142G0458 Punica granatum HOM05D005113 ORTHO05D006045 1.6e-09 66.2 76 53.9
Solyc01g006760.3 Solanum lycopersicum HOM05D005113 ORTHO05D006045 1.6e-09 66.2 98 42.9
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 2.1e-09 65.9 85 45.9
Migut.J00732 Erythranthe guttata HOM05D005113 ORTHO05D006045 2.1e-09 65.9 66 54.5
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 2.1e-09 65.9 84 48.8
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 2.7e-09 65.5 77 48.1
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 2.7e-09 65.5 88 47.7
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 3.5e-09 65.1 53 62.3
Lalb_Chr20g0111221 Lupinus albus HOM05D005113 ORTHO05D006045 3.5e-09 65.1 102 41.2
A03p19780 Brassica napus HOM05D005113 ORTHO05D006045 4.6e-09 64.7 81 48.1
C03p23070 Brassica napus HOM05D005113 ORTHO05D006045 4.6e-09 64.7 81 48.1
BraA03t11230Z Brassica rapa HOM05D005113 ORTHO05D006045 4.6e-09 64.7 81 48.1
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 4.6e-09 64.7 85 48.2
Lalb_Chr25g0287851 Lupinus albus HOM05D005113 ORTHO05D006045 4.6e-09 64.7 101 42.6
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 6.0e-09 64.3 104 43.3
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 6.0e-09 64.3 77 46.8
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 6.0e-09 64.3 60 58.3
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 7.9e-09 63.9 85 47.1
Sopen10g032200 Solanum pennellii HOM05D005113 ORTHO05D006045 1.8e-08 62.8 70 48.6
Lj1g0007298 Lotus japonicus HOM05D005113 ORTHO05D006045 2.3e-08 62.4 83 45.8
Solyc10g081690.1 Solanum lycopersicum HOM05D005113 ORTHO05D006045 2.3e-08 62.4 70 48.6
PGSC0003DMG400028226 Solanum tuberosum HOM05D009103 ORTHO05D010883 2.3e-08 62.4 70 48.6
DCAR_020680 Daucus carota HOM05D005113 ORTHO05D006045 3.0e-08 62.0 85 44.7
PSO384G4604 Papaver somniferum HOM05D005113 ORTHO05D006045 3.9e-08 61.6 101 42.6
Phvul.001G198200 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 8.7e-08 60.5 88 42.0
arahy.Tifrunner.gnm1.ann1.HSX17H Arachis hypogaea HOM05D005113 ORTHO05D006045 1.1e-07 60.1 60 51.7
Glyma.02G187500 Glycine max HOM05D005113 ORTHO05D006045 1.9e-07 59.3 73 47.9
A09p45390 Brassica napus HOM05D005113 ORTHO05D006045 2.5e-07 58.9 91 45.1
DCAR_009075 Daucus carota HOM05D000059 ORTHO05D012409 3.3e-07 58.5 71 47.9
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 3.3e-07 58.5 64 53.1
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 3.3e-07 58.5 60 51.7
CDE07G0213 Ceratophyllum demersum HOM05D005113 ORTHO05D006045 9.6e-07 57.0 71 42.3
Nitab4.5_0000721g0120 Nicotiana tabacum HOM05D005113 ORTHO05D006045 9.6e-07 57.0 76 50.0
Glyma.19G202000 Glycine max HOM05D005113 ORTHO05D006045 1.3e-06 56.6 101 38.6
arahy.Tifrunner.gnm1.ann1.I8YMJK Arachis hypogaea HOM05D005113 ORTHO05D006045 3.7e-06 55.1 91 40.7
VMungo0720G0986 Vigna mungo HOM05D005113 ORTHO05D006045 8.2e-06 53.9 73 45.2


User provided reference genes

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