Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 0.0e+00 1218.8 631 100.0
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 8.1e-301 1036.6 631 87.3
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.9e-294 1015.4 633 85.8
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 9.3e-273 943.3 632 81.0
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 4.2e-257 891.3 637 76.3
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 5.0e-226 788.1 644 67.9
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 2.5e-225 785.8 643 67.2
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 8.0e-216 754.2 643 67.2
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 3.7e-213 745.3 641 65.2
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 9.1e-212 740.7 644 64.4
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 4.2e-209 731.9 644 63.2
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 1.8e-207 726.5 706 61.3
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 3.0e-207 725.7 639 63.7
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 2.6e-206 722.6 642 62.3
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 3.4e-206 722.2 669 61.1
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 7.5e-206 721.1 645 62.6
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.2e-205 719.5 641 62.1
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 9.5e-201 704.1 645 61.6
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.4e-198 695.7 643 61.4
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 2.2e-197 693.0 643 61.1
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 8.3e-197 691.0 646 61.5
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 3.2e-196 689.1 639 61.7
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 1.3e-194 683.7 639 60.3
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 3.7e-189 665.6 663 57.9
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 2.4e-188 662.9 642 59.8
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 7.0e-188 661.4 643 58.2
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 3.5e-187 659.1 643 58.5
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 1.3e-186 657.1 620 59.2
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.7e-186 656.8 643 58.3
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 7.3e-185 651.4 638 58.2
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 2.8e-184 649.4 655 58.5
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 6.2e-184 648.3 637 59.5
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 1.1e-183 647.5 616 59.3
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 3.1e-183 646.0 639 59.2
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 4.0e-183 645.6 641 58.2
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 5.2e-183 645.2 674 56.7
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 6.8e-183 644.8 636 58.0
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.4e-182 642.5 614 57.8
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 4.4e-182 642.1 634 57.9
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 7.5e-182 641.3 651 56.8
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 5.4e-180 635.2 637 58.2
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 7.1e-180 634.8 616 57.0
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 1.7e-178 630.2 637 57.9
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.7e-178 630.2 641 56.3
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 5.1e-178 628.6 640 56.6
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 1.5e-177 627.1 643 57.1
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 4.3e-177 625.5 637 57.1
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 2.4e-175 619.8 643 55.8
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 6.8e-175 618.2 642 55.9
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 1.2e-174 617.5 642 56.4
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.6e-174 616.3 649 54.5
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 3.4e-174 615.9 615 57.4
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 4.4e-174 615.5 642 55.9
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 1.1e-172 610.9 651 55.9
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 1.4e-172 610.5 637 55.9
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 1.7e-170 603.6 639 56.5
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 3.0e-170 602.8 638 57.1
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.3e-169 599.4 642 55.8
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 3.4e-166 589.3 641 53.5
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 5.4e-164 582.0 648 52.0
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 5.4e-164 582.0 637 54.8
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 7.1e-164 581.6 509 64.4
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 2.1e-163 580.1 636 53.0
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.1e-163 580.1 671 52.8
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.3e-162 577.4 673 52.7
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 2.3e-162 576.6 506 63.6
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 2.1e-160 570.1 648 52.3
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 2.8e-160 569.7 614 52.1
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 4.8e-160 568.9 646 53.7
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 6.2e-160 568.5 693 50.8
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 6.2e-160 568.5 639 51.2
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 2.4e-159 566.6 644 53.3
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 4.5e-158 562.4 641 51.2
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 9.9e-158 561.2 610 52.5
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 2.9e-157 559.7 644 50.6
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 4.9e-157 558.9 649 52.9
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 6.4e-157 558.5 647 52.1
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 1.6e-155 553.9 639 50.2
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 1.6e-155 553.9 635 52.4
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 2.1e-155 553.5 639 50.4
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 2.7e-155 553.1 647 50.4
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 6.0e-155 552.0 611 52.5
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 1.0e-154 551.2 608 50.5
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 1.8e-154 550.4 620 53.2
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 1.5e-153 547.4 635 50.2
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 5.6e-153 545.4 667 48.4
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.6e-152 543.9 634 50.9
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 2.1e-152 543.5 642 50.6
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 2.8e-152 543.1 644 51.4
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.1e-151 541.2 634 50.6
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 1.4e-151 540.8 636 48.3
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 5.3e-151 538.9 636 48.0
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 1.5e-150 537.3 643 50.9
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 8.4e-149 531.6 640 51.6
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 3.2e-148 529.6 624 52.2
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 3.2e-148 529.6 649 49.6
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 2.1e-147 526.9 637 48.7
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 2.1e-147 526.9 647 49.3
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 1.8e-146 523.9 636 48.1
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 4.3e-145 519.2 643 49.3
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 1.6e-144 517.3 571 54.5
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 2.1e-144 516.9 643 49.0
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 2.1e-144 516.9 641 51.5
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 1.4e-143 514.2 639 47.4
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 3.1e-143 513.1 639 49.1
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 5.3e-143 512.3 638 49.1
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 1.5e-142 510.8 634 50.0
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 3.4e-142 509.6 644 49.2
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 2.9e-141 506.5 642 48.3
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 1.9e-140 503.8 642 48.1
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.7e-139 500.0 395 66.1
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 1.8e-138 497.3 649 50.2
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 6.7e-138 495.4 650 47.8
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 1.5e-134 484.2 575 52.3
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 2.0e-134 483.8 637 48.2
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 2.6e-134 483.4 406 66.7
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 3.4e-134 483.0 610 48.0
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 3.4e-134 483.0 645 47.1
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 2.1e-131 473.8 655 45.8
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 2.3e-130 470.3 620 46.6
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 1.1e-127 461.5 632 46.5
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 2.6e-126 456.8 611 47.6
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.1e-124 451.4 553 49.7
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 7.2e-124 448.7 618 45.1
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 4.2e-116 422.9 645 43.3
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 7.4e-113 412.1 324 65.7
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 6.3e-112 409.1 619 43.8
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.9e-109 400.2 379 62.5
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 8.5e-109 398.7 648 44.8
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 2.1e-107 394.0 343 62.4
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 7.2e-100 369.0 385 58.2
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 8.8e-98 362.1 400 53.8
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.2e-97 361.7 521 46.3
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.7e-88 331.3 251 66.9
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.5e-81 308.1 389 50.1
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 6.4e-80 302.8 422 49.1
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 1.2e-78 298.5 592 37.0
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 2.6e-73 280.8 256 62.5
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 1.2e-70 271.9 685 30.7
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 1.7e-69 268.1 206 67.0
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 8.9e-66 255.8 442 37.1
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 5.4e-63 246.5 622 33.8
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 3.5e-62 243.8 267 50.2
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 7.8e-62 242.7 644 33.7
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 6.6e-61 239.6 401 37.2
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 7.3e-60 236.1 318 44.0
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 4.4e-57 226.9 265 55.1
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.5e-52 211.8 332 43.4
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 2.8e-51 207.6 259 54.4
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 1.2e-46 192.2 285 44.2
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 2.7e-46 191.0 304 42.4
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 4.6e-46 190.3 258 47.3
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 6.0e-46 189.9 233 51.1
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.1e-42 179.1 180 57.2
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 3.3e-36 157.5 205 51.2
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 1.4e-34 152.1 90 84.4
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 6.9e-34 149.8 95 78.9
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 9.0e-34 149.4 221 43.9
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.0e-32 146.0 256 41.0
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.3e-32 145.6 219 42.0
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 2.9e-32 144.4 268 40.3
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 1.4e-31 142.1 142 52.1
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 3.2e-31 141.0 203 44.8
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 2.7e-30 137.9 363 31.1
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 2.7e-22 111.3 204 38.7
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 6.3e-19 100.1 247 34.4
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 3.1e-18 97.8 82 54.9
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.1e-12 79.3 97 45.4
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 1.5e-12 79.0 308 27.3
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 1.8e-10 72.0 196 31.1
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.5e-09 68.9 91 46.2
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.4e-07 62.4 66 51.5
Gohir.D02G094850 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.7e-06 58.2 60 48.3


User provided reference genes

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