Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 8.0e-132 473.8 242 100.0
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 4.1e-120 434.9 242 91.7
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 3.4e-90 335.5 238 68.5
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 1.4e-88 330.1 244 68.0
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 1.2e-87 327.0 246 68.7
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 1.6e-87 326.6 242 66.1
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 6.0e-87 324.7 227 70.0
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 1.9e-85 319.7 248 66.9
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 7.3e-85 317.8 218 71.6
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 9.6e-85 317.4 218 72.9
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 1.3e-84 317.0 248 66.5
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 4.8e-84 315.1 241 67.2
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 4.8e-84 315.1 214 72.0
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 6.2e-84 314.7 245 67.3
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 8.1e-84 314.3 238 66.0
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 1.1e-83 313.9 239 65.7
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 1.4e-83 313.5 236 66.9
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 2.4e-83 312.8 218 72.0
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 3.1e-83 312.4 219 70.3
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 3.1e-83 312.4 214 69.6
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 5.3e-83 311.6 244 65.2
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 6.9e-83 311.2 241 65.6
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 6.9e-83 311.2 230 70.4
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 9.0e-83 310.8 243 64.6
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 1.2e-82 310.5 239 66.1
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 2.0e-82 309.7 235 66.0
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 2.6e-82 309.3 212 70.3
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 5.8e-82 308.1 217 69.6
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 5.8e-82 308.1 253 63.2
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 5.8e-82 308.1 242 65.3
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 1.3e-81 307.0 217 69.1
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 1.3e-81 307.0 222 69.4
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 1.3e-81 307.0 211 70.6
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 2.2e-81 306.2 241 64.7
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 2.9e-81 305.8 239 65.3
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 6.4e-81 304.7 215 69.3
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 8.4e-81 304.3 214 68.7
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 8.4e-81 304.3 225 67.6
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 8.4e-81 304.3 215 69.3
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 8.4e-81 304.3 215 69.3
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 1.9e-80 303.1 226 67.7
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 2.4e-80 302.8 217 68.7
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 3.2e-80 302.4 220 67.7
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 7.1e-80 301.2 217 69.1
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 9.3e-80 300.8 215 69.8
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 1.2e-79 300.4 217 69.1
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 2.7e-79 299.3 225 67.6
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 3.5e-79 298.9 225 68.0
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 3.5e-79 298.9 220 66.8
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 6.0e-79 298.1 218 69.7
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.7e-78 296.6 239 62.3
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 1.7e-78 296.6 214 66.8
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 1.7e-78 296.6 214 66.8
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 3.9e-78 295.4 221 67.0
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.1e-77 293.9 239 61.5
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 1.5e-77 293.5 219 66.2
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 1.5e-77 293.5 230 63.5
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.5e-77 293.5 230 63.5
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 1.5e-77 293.5 240 61.2
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 1.5e-77 293.5 240 61.2
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 1.9e-77 293.1 220 67.7
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 2.5e-77 292.7 222 65.8
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 7.3e-77 291.2 249 60.6
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 1.3e-76 290.4 256 60.2
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 6.2e-76 288.1 215 67.9
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 6.2e-76 288.1 253 58.9
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 2.4e-75 286.2 218 66.5
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 2.4e-75 286.2 216 67.1
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 4.0e-75 285.4 216 66.2
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 9.0e-75 284.3 239 61.1
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 1.5e-74 283.5 208 68.8
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 3.4e-74 282.3 216 66.2
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 4.5e-74 282.0 216 65.3
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 7.6e-74 281.2 222 61.7
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 1.7e-73 280.0 216 64.8
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 3.8e-73 278.9 217 66.4
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 6.4e-73 278.1 252 56.3
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 6.4e-73 278.1 231 63.6
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 1.4e-72 276.9 243 57.6
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 4.2e-72 275.4 209 66.0
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 7.1e-72 274.6 219 65.3
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 2.7e-71 272.7 213 64.8
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 6.0e-71 271.6 242 56.6
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 6.0e-71 271.6 220 63.2
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 7.9e-71 271.2 211 63.5
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 3.9e-70 268.9 215 66.5
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 1.9e-69 266.5 205 66.3
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 2.5e-69 266.2 230 59.6
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 7.4e-69 264.6 203 66.0
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 9.6e-69 264.2 203 66.0
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 5.3e-67 258.5 237 57.8
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.6e-66 256.1 221 59.7
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 1.3e-57 227.3 218 56.4
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.4e-56 223.8 128 80.5
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.4e-56 223.8 128 80.5
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 1.9e-56 223.4 226 50.0
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 3.2e-56 222.6 128 78.9
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 9.3e-56 221.1 173 65.3
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.2e-55 220.7 226 49.6
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 3.5e-55 219.2 128 75.0
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 1.5e-53 213.8 172 67.4
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.4e-48 197.2 143 67.1
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.2e-48 195.7 142 66.9
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 6.1e-47 191.8 175 58.3
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 5.1e-46 188.7 196 52.6
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 5.1e-46 188.7 211 50.7
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 7.7e-42 174.9 155 58.7
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 6.5e-41 171.8 256 38.7
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 9.4e-40 167.9 137 62.0
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 1.0e-38 164.5 104 71.2
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 1.3e-36 157.5 149 53.0
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 1.2e-34 151.0 106 67.0
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 3.2e-32 142.9 140 50.7
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 9.4e-32 141.4 117 62.4
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 2.0e-29 133.7 143 48.3
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.2e-28 130.2 77 76.6
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.1e-27 127.9 134 52.2
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.4e-27 127.5 79 72.2
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.8e-27 127.1 78 75.6
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.1e-27 125.9 79 74.7
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 7.0e-27 125.2 79 73.4
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 7.0e-27 125.2 79 73.4
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.2e-26 124.4 78 74.4
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.2e-26 124.4 78 74.4
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 9.4e-24 114.8 65 75.4
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 4.4e-21 105.9 66 69.7
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 2.4e-19 100.1 140 44.3
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 3.8e-17 92.8 125 49.6
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 5.0e-17 92.4 75 62.7
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 6.5e-17 92.0 85 56.5
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 4.2e-16 89.4 49 79.6
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 7.2e-16 88.6 55 70.9
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 2.1e-15 87.0 85 50.6
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 3.6e-15 86.3 94 50.0
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 8.0e-15 85.1 87 50.6
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 3.0e-14 83.2 108 49.1
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.2e-13 81.3 51 68.6
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 5.7e-13 79.0 88 53.4
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 7.5e-13 78.6 53 60.4
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 2.8e-12 76.6 64 60.9
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 4.9e-12 75.9 168 31.5
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 7.0e-11 72.0 38 76.3
Cre10.g418700 Chlamydomonas reinhardtii HOM05D005267 ORTHO05D006303 2.7e-10 70.1 177 29.4
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-09 67.0 165 26.1
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 2.3e-09 67.0 164 26.8
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 3.8e-09 66.2 181 26.0
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 6.6e-09 65.5 169 24.9
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 2.5e-08 63.5 62 51.6
Pp3c8_10880 Physcomitrium patens HOM05D005267 ORTHO05D006303 3.6e-07 59.7 201 23.4
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 1.0e-06 58.2 35 68.6
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.8e-06 57.4 128 26.6
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 3.0e-06 56.6 131 28.2


User provided reference genes

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