Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 6.9e-237 823.5 408 100.0
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 3.8e-219 764.6 408 93.1
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 8.8e-208 726.9 408 87.0
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 3.1e-205 718.4 408 86.0
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 7.3e-194 680.6 408 80.1
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 2.1e-193 679.1 408 79.9
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 5.2e-192 674.5 408 78.7
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 2.6e-191 672.2 408 77.9
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 9.8e-191 670.2 409 79.0
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 9.8e-191 670.2 408 78.7
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 8.3e-190 667.2 410 78.5
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 8.3e-190 667.2 408 79.2
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 1.9e-189 666.0 408 78.2
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 1.2e-188 663.3 408 77.7
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 2.7e-188 662.1 409 78.7
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 7.8e-188 660.6 408 78.9
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 7.8e-188 660.6 408 78.7
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.0e-187 660.2 408 78.2
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 1.7e-187 659.4 408 76.2
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.7e-187 659.4 408 76.2
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 5.0e-187 657.9 408 77.0
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.1e-184 650.2 408 77.7
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 1.8e-184 649.4 409 77.0
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 1.8e-184 649.4 408 76.0
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 4.0e-184 648.3 408 76.5
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 4.0e-184 648.3 411 75.7
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.2e-183 646.7 408 77.0
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 2.0e-183 646.0 408 77.7
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 2.6e-183 645.6 408 76.7
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 2.6e-183 645.6 407 77.6
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 2.6e-183 645.6 407 77.6
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 7.5e-183 644.0 398 76.1
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 7.5e-183 644.0 407 77.1
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.3e-182 643.3 408 76.5
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 1.7e-182 642.9 408 74.5
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.9e-182 642.1 398 76.1
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 8.3e-182 640.6 408 77.7
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 2.4e-181 639.0 408 75.2
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 5.4e-181 637.9 408 76.7
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.2e-180 636.7 404 74.8
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.2e-180 636.7 408 75.0
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 2.1e-180 636.0 408 75.5
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 2.1e-180 636.0 409 76.0
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 1.3e-179 633.3 408 75.2
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 5.1e-179 631.3 408 76.0
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 4.3e-178 628.2 408 73.8
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 9.5e-178 627.1 408 75.2
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 2.1e-177 625.9 408 75.0
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 4.7e-177 624.8 408 74.3
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 1.4e-176 623.2 409 73.6
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 3.1e-176 622.1 408 73.8
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 3.1e-176 622.1 408 73.8
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 3.4e-175 618.6 408 74.3
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 1.7e-174 616.3 407 73.2
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 2.2e-174 615.9 404 75.0
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 3.7e-174 615.1 408 72.5
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 8.3e-174 614.0 407 73.5
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 7.1e-173 610.9 410 72.4
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 7.1e-173 610.9 407 73.2
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 9.2e-173 610.5 408 72.1
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 2.7e-172 609.0 408 71.3
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 6.0e-172 607.8 407 73.2
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 2.3e-171 605.9 409 70.9
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 3.0e-171 605.5 408 71.8
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 6.6e-171 604.4 410 71.0
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 8.6e-171 604.0 408 72.1
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 1.1e-170 603.6 408 72.1
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 1.6e-169 599.7 412 70.4
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 1.6e-169 599.7 412 70.4
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 1.6e-169 599.7 412 70.4
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 1.6e-169 599.7 412 70.4
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 2.8e-169 599.0 408 70.6
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 2.8e-169 599.0 402 71.1
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 3.6e-169 598.6 412 70.1
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 1.4e-168 596.7 408 70.8
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 1.8e-168 596.3 408 70.8
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 5.2e-168 594.7 409 71.6
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 1.2e-167 593.6 408 70.6
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 2.0e-167 592.8 439 68.1
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 2.6e-167 592.4 408 70.6
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 5.8e-167 591.3 408 70.8
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 7.6e-167 590.9 412 69.2
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 9.9e-167 590.5 412 69.4
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 3.8e-166 588.6 409 69.4
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 4.9e-166 588.2 409 68.9
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 4.9e-166 588.2 406 70.2
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 8.4e-166 587.4 409 68.7
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 2.4e-165 585.9 409 68.9
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 2.4e-165 585.9 403 70.5
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 3.2e-165 585.5 402 69.2
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 5.4e-165 584.7 408 69.4
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 9.2e-165 583.9 408 71.3
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 1.2e-164 583.6 404 71.8
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 1.2e-164 583.6 411 70.3
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 2.1e-164 582.8 409 69.7
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 6.0e-164 581.3 404 71.5
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 2.3e-163 579.3 410 69.8
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 3.0e-163 578.9 419 67.5
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 1.1e-162 577.0 406 68.0
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 3.3e-162 575.5 412 68.7
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 5.6e-162 574.7 401 70.1
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 5.3e-160 568.2 406 69.5
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 6.9e-160 567.8 405 67.7
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 9.9e-159 563.9 360 75.3
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 1.4e-157 560.1 356 76.7
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 4.2e-157 558.5 406 66.7
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 5.4e-157 558.1 408 67.6
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 2.1e-156 556.2 405 67.4
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 3.5e-156 555.4 405 67.4
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 1.5e-154 550.1 494 58.9
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.4e-149 533.5 409 64.3
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 8.7e-147 524.2 408 63.7
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 1.5e-146 523.5 402 63.4
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 4.3e-146 521.9 351 71.2
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 4.3e-146 521.9 405 64.0
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 8.1e-145 517.7 313 80.5
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 8.1e-145 517.7 405 63.2
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 3.7e-137 492.3 403 58.3
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 2.0e-135 486.5 404 59.2
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 2.9e-134 482.6 408 61.5
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 3.0e-131 472.6 416 55.5
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.9e-130 469.9 405 56.0
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.1e-128 464.2 315 73.0
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 5.1e-115 418.7 273 73.6
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 1.8e-112 410.2 273 71.4
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 2.2e-110 403.3 363 55.9
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 2.2e-105 386.7 315 60.3
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 5.9e-103 378.6 267 70.0
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 3.8e-102 375.9 407 48.4
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 3.2e-101 372.9 418 45.7
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 6.8e-99 365.2 417 52.5
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 3.5e-95 352.8 418 46.9
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 8.3e-89 331.6 411 45.0
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 1.6e-79 300.8 253 60.5
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 3.9e-78 296.2 443 40.4
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 1.9e-72 277.3 176 75.0
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 2.4e-72 276.9 161 83.2
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 1.5e-66 257.7 176 69.3
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 5.8e-66 255.8 173 72.8
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 3.1e-59 233.4 213 53.5
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 5.8e-58 229.2 135 80.7
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 1.6e-55 221.1 158 63.9
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 1.5e-53 214.5 352 35.5
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 3.1e-51 206.8 114 83.3
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 6.8e-51 205.7 193 53.9
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 1.6e-47 194.5 148 61.5
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 3.1e-35 153.7 97 74.2
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 8.4e-33 145.6 91 75.8
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 4.6e-23 113.2 97 60.8
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 6.9e-19 99.4 70 68.6
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 3.4e-18 97.1 227 30.8
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 5.8e-18 96.3 84 60.7
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 5.9e-10 69.7 56 58.9


User provided reference genes

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