Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G060550 Populus trichocarpa HOM05D004031 ORTHO05D011186 1.1e-26 122.5 60 100.0
Manes.09G038400 Manihot esculenta HOM05D004031 ORTHO05D011186 4.7e-25 117.1 60 91.7
GSVIVG01033459001 Vitis vinifera HOM05D004031 ORTHO05D011186 4.4e-23 110.5 60 83.3
MD12G1054200 Malus domestica HOM05D004031 ORTHO05D011186 1.3e-22 109.0 58 84.5
Thecc.05G176000 Theobroma cacao HOM05D004031 ORTHO05D011186 3.7e-22 107.5 60 83.3
Prupe.7G082600 Prunus persica HOM05D004031 ORTHO05D011186 1.9e-21 105.1 56 83.9
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 3.2e-21 104.4 58 79.3
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 5.4e-21 103.6 59 78.0
Gohir.D01G124600 Gossypium hirsutum HOM05D004031 ORTHO05D011186 7.0e-21 103.2 60 80.0
Gohir.A01G137400 Gossypium hirsutum HOM05D004031 ORTHO05D011186 2.0e-20 101.7 60 78.3
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 2.0e-20 101.7 55 81.8
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 2.7e-20 101.3 55 87.3
Duzib128G0401 Durio zibethinus HOM05D004031 ORTHO05D011186 4.6e-20 100.5 60 80.0
CSS0013106 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D011186 1.0e-19 99.4 55 80.0
RcHm_v2.0_Chr3g0479131 Rosa chinensis HOM05D004031 ORTHO05D011186 1.3e-19 99.0 60 73.3
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 2.3e-19 98.2 54 83.3
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 3.0e-19 97.8 54 79.6
CiPaw.09G027900 Carya illinoinensis HOM05D004031 ORTHO05D011186 3.9e-19 97.4 60 73.3
CDE05G3199 Ceratophyllum demersum HOM05D004031 ORTHO05D011186 3.9e-19 97.4 60 70.0
Eucgr.K01857 Eucalyptus grandis HOM05D004031 ORTHO05D011186 5.0e-19 97.1 55 80.0
Sed0024429 Sechium edule HOM05D004031 ORTHO05D011186 1.1e-18 95.9 57 75.4
Medtr7g093770 Medicago truncatula HOM05D004031 ORTHO05D011186 4.3e-18 94.0 58 72.4
MELO3C009606.2 Cucumis melo HOM05D004031 ORTHO05D011186 5.6e-18 93.6 54 75.9
Nn7g35951 Nelumbo nucifera HOM05D004031 ORTHO05D011186 5.6e-18 93.6 60 71.7
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.2e-17 92.4 53 77.4
Hma1.2p1_0124F.1_g058300 Hydrangea macrophylla HOM05D004031 ORTHO05D011186 1.2e-17 92.4 55 76.4
Nn7g36859 Nelumbo nucifera HOM05D004031 ORTHO05D011186 2.1e-17 91.7 60 71.7
Phvul.001G144800 Phaseolus vulgaris HOM05D004031 ORTHO05D011186 6.2e-17 90.1 61 68.9
Carub.0003s1134 Capsella rubella HOM05D004031 ORTHO05D011186 1.4e-16 89.0 62 71.0
Glyma.19G150500 Glycine max HOM05D004031 ORTHO05D011186 1.8e-16 88.6 54 75.9
Lalb_Chr15g0079141 Lupinus albus HOM05D004031 ORTHO05D011186 2.3e-16 88.2 61 70.5
Lj1g0020490 Lotus japonicus HOM05D004031 ORTHO05D011186 5.2e-16 87.0 53 69.8
Migut.J01860 Erythranthe guttata HOM05D004031 ORTHO05D011186 6.8e-16 86.7 55 67.3
Aa31LG3G5450 Aethionema arabicum HOM05D004031 ORTHO05D011186 8.9e-16 86.3 62 67.7
Aa31LG3G5490 Aethionema arabicum HOM05D004031 ORTHO05D011186 8.9e-16 86.3 62 67.7
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 3.4e-15 84.3 58 65.5
Cc06_g15560 Coffea canephora HOM05D004031 ORTHO05D011186 7.5e-15 83.2 57 68.4
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 1.3e-14 82.4 59 66.1
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.3e-14 82.4 59 66.1
A03p37430 Brassica napus HOM05D004031 ORTHO05D011186 2.9e-14 81.3 58 65.5
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 3.7e-14 80.9 59 62.7
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 3.7e-14 80.9 59 62.7
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 1.4e-13 79.0 52 67.3
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 2.4e-13 78.2 60 65.0
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 3.2e-13 77.8 59 61.0
Glyma.03G147100 Glycine max HOM05D004031 ORTHO05D011186 3.2e-13 77.8 50 74.0
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 1.6e-12 75.5 58 62.1
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 1.6e-12 75.5 58 62.1
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 5.1e-11 70.5 38 81.6
SEGI_01182 Sequoiadendron giganteum HOM05D004031 ORTHO05D011186 3.6e-09 64.3 37 75.7
Hund06156 Selenicereus undatus HOM05D000159 ORTHO05D011186 8.1e-09 63.2 36 72.2
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 1.8e-08 62.0 38 76.3
SHI31744 Sapria himalayana HOM05D004031 ORTHO05D011186 1.8e-08 62.0 41 65.9
Sed0004834 Sechium edule HOM05D004031 ORTHO05D011186 1.5e-07 58.9 59 54.2
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 2.0e-07 58.5 34 70.6
Mapoly0005s0168 Marchantia polymorpha HOM05D004031 ORTHO05D011186 2.6e-07 58.2 51 47.1


User provided reference genes

Program Settings