Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 4.9e-280 967.2 518 100.0
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 3.0e-245 851.7 525 89.5
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 2.0e-209 732.6 526 78.1
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 6.5e-155 551.6 357 81.8
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 9.3e-154 547.7 534 60.1
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 1.8e-141 506.9 512 58.4
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 2.2e-139 500.0 531 56.1
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 7.9e-137 491.5 530 56.0
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 7.4e-135 485.0 519 56.1
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 1.0e-131 474.6 525 55.2
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 3.8e-131 472.6 518 55.4
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 6.5e-131 471.9 515 55.7
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 1.6e-129 467.2 518 55.2
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 2.1e-129 466.8 539 54.5
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 2.7e-129 466.5 563 53.1
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 2.3e-128 463.4 514 56.0
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 5.2e-128 462.2 520 55.0
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 2.6e-127 459.9 549 52.3
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 4.8e-126 455.7 515 53.6
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 4.8e-126 455.7 538 52.6
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 1.8e-125 453.8 545 53.0
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 9.1e-125 451.4 524 54.4
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 7.7e-124 448.4 516 53.3
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 7.2e-122 441.8 518 52.9
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 3.6e-121 439.5 550 52.0
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.0e-120 436.0 552 51.6
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 5.2e-120 435.6 549 51.9
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 3.3e-119 433.0 529 49.3
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 3.1e-117 426.4 541 51.9
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.2e-116 424.5 502 52.2
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 1.2e-116 424.5 526 51.1
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 2.0e-116 423.7 534 50.0
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 1.3e-115 421.0 531 49.5
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 8.5e-115 418.3 533 50.5
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 1.1e-114 417.9 508 50.8
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.9e-114 417.2 504 50.8
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 2.5e-114 416.8 538 51.7
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 1.2e-113 414.5 524 48.9
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.2e-113 414.5 474 52.5
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 1.6e-113 414.1 507 50.1
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 2.1e-113 413.7 467 53.1
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.8e-112 410.6 501 52.1
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 3.0e-112 409.8 517 52.0
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 4.0e-112 409.5 531 50.1
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 5.2e-112 409.1 555 49.2
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 5.2e-112 409.1 532 50.9
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 5.2e-112 409.1 524 51.0
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 8.8e-112 408.3 543 50.6
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 8.8e-112 408.3 508 51.8
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 5.7e-111 405.6 508 50.6
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 1.1e-109 401.4 527 49.0
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 4.1e-109 399.4 519 50.7
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 7.7e-108 395.2 521 50.9
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.0e-107 394.8 528 48.7
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 4.7e-105 386.0 357 62.5
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 6.1e-105 385.6 540 47.6
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 3.0e-104 383.3 517 46.2
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 4.0e-104 382.9 526 47.3
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 4.4e-103 379.4 481 49.9
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 5.7e-103 379.0 527 47.2
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 9.8e-103 378.3 524 46.8
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 1.7e-102 377.5 507 46.4
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 1.6e-100 370.9 518 46.3
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 1.6e-100 370.9 467 48.6
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 2.0e-100 370.5 528 47.0
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 2.9e-99 366.7 509 47.0
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 5.6e-98 362.5 509 47.0
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 7.3e-98 362.1 499 46.3
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 6.1e-97 359.0 367 54.2
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 1.0e-96 358.2 533 45.0
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 2.3e-96 357.1 518 44.8
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 3.0e-96 356.7 529 45.6
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 3.0e-96 356.7 518 45.8
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 4.0e-96 356.3 530 44.7
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 5.2e-96 355.9 527 45.0
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.0e-95 354.0 532 44.9
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 2.2e-94 350.5 454 48.9
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 6.4e-94 349.0 506 44.7
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 1.6e-92 344.4 477 45.5
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.0e-92 344.0 466 46.6
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 2.7e-92 343.6 525 44.6
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 2.7e-92 343.6 544 43.4
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 1.3e-91 341.3 508 43.7
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 1.3e-91 341.3 545 43.5
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 2.5e-90 337.0 456 46.7
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 4.7e-89 332.8 489 45.6
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 1.4e-88 331.3 372 51.1
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 1.5e-87 327.8 373 50.9
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 4.4e-87 326.2 372 51.9
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 9.8e-87 325.1 474 46.0
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 1.7e-86 324.3 465 46.2
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 1.7e-86 324.3 465 46.2
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 1.7e-86 324.3 465 46.2
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 8.3e-86 322.0 530 41.9
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 8.3e-86 322.0 530 41.9
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 8.3e-86 322.0 530 41.9
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 1.4e-85 321.2 528 41.5
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 1.9e-85 320.9 505 43.0
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 9.2e-85 318.5 357 50.1
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.6e-84 317.8 370 48.9
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.0e-84 317.4 366 50.3
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 2.7e-84 317.0 544 39.9
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 7.8e-84 315.5 473 43.6
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 1.3e-83 314.7 451 43.7
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 3.0e-83 313.5 527 41.9
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 3.0e-83 313.5 527 41.9
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 3.9e-83 313.2 433 46.7
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 5.0e-83 312.8 429 45.0
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 8.6e-83 312.0 529 41.0
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 1.9e-82 310.8 487 46.0
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 3.3e-82 310.1 431 46.2
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 6.8e-80 302.4 527 41.6
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 3.4e-79 300.1 512 41.4
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 1.3e-78 298.1 349 50.1
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 3.7e-78 296.6 367 49.0
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 1.4e-77 294.7 370 47.3
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 9.2e-77 292.0 535 37.0
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 1.6e-76 291.2 312 52.6
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 3.9e-75 286.6 382 46.1
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 6.6e-75 285.8 481 41.2
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 8.6e-75 285.4 423 44.0
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 5.6e-74 282.7 368 47.8
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 1.2e-73 281.6 552 38.6
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.4e-72 278.1 448 42.0
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 1.8e-72 277.7 328 50.0
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.8e-72 277.7 515 38.8
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 5.2e-72 276.2 399 41.6
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 4.4e-71 273.1 337 47.2
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.4e-69 268.1 521 39.2
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 1.9e-69 267.7 470 39.8
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 1.5e-63 248.1 340 47.1
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.4e-63 246.5 410 39.3
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 7.6e-63 245.7 353 45.3
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 8.4e-62 242.3 447 37.8
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 4.6e-60 236.5 311 46.0
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 6.6e-59 232.6 446 36.8
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 9.6e-58 228.8 532 34.6
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 9.6e-58 228.8 532 34.6
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.3e-57 228.4 208 59.6
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 1.4e-53 214.9 300 42.0
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 2.1e-49 201.1 491 32.0
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.7e-38 164.9 183 52.5
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.8e-38 163.7 183 52.5
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.6e-36 158.3 299 37.1
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.3e-35 154.5 298 35.9
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.3e-33 148.7 420 29.8
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.1e-32 145.6 472 29.0
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.1e-32 144.1 551 26.3
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.1e-32 143.7 355 30.4
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 3.4e-31 140.6 446 28.3
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 4.5e-31 140.2 307 33.6
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 5.5e-29 133.3 189 49.2
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 2.3e-27 127.9 371 28.6
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 8.8e-27 125.9 578 24.7
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 5.7e-26 123.2 119 53.8
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 9.7e-26 122.5 230 35.7
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.0e-18 98.2 90 57.8
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 3.1e-16 90.9 172 40.7
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 9.1e-16 89.4 92 50.0
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.2e-15 89.0 218 30.7
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 1.4e-11 75.5 52 73.1
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 2.0e-07 61.6 56 48.2


User provided reference genes

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