Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 5.3e-30 134.0 86 100.0
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 1.6e-21 105.9 87 82.8
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 1.4e-17 92.8 86 57.0
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 5.2e-17 90.9 86 74.4
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 4.4e-16 87.8 79 67.1
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.1e-14 83.2 87 52.9
Potri.006G050800 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.1e-14 83.2 83 73.5
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 3.1e-14 81.6 88 53.4
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 4.1e-14 81.3 88 51.1
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.6e-13 79.3 90 48.9
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 3.5e-13 78.2 96 41.7
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 2.9e-12 75.1 89 48.3
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.3e-11 71.6 73 50.7
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 7.2e-11 70.5 85 48.2
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 1.2e-10 69.7 98 43.9
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 1.2e-10 69.7 98 43.9
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 1.2e-10 69.7 98 43.9
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 1.2e-10 69.7 97 53.6
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 1.2e-10 69.7 96 51.0
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 1.6e-10 69.3 95 44.2
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 2.8e-10 68.6 90 44.4
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.6e-10 68.2 92 42.4
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.6e-10 68.2 92 42.4
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 3.6e-10 68.2 87 59.8
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 4.7e-10 67.8 73 52.1
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 4.7e-10 67.8 87 62.1
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 4.7e-10 67.8 90 53.3
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.1e-10 67.4 32 87.5
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.1e-10 67.4 32 87.5
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 6.1e-10 67.4 32 87.5
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 6.1e-10 67.4 32 84.4
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 6.1e-10 67.4 85 62.4
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 6.1e-10 67.4 32 84.4
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 8.0e-10 67.0 96 53.1
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 8.0e-10 67.0 84 42.9
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 8.0e-10 67.0 32 87.5
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 8.0e-10 67.0 32 87.5
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 8.0e-10 67.0 32 87.5
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 1.0e-09 66.6 84 50.0
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.0e-09 66.6 86 44.2
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 1.4e-09 66.2 95 42.1
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.8e-09 65.9 83 45.8
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.8e-09 65.9 84 66.7
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 1.8e-09 65.9 86 43.0
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.8e-09 65.9 85 41.2
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.0e-09 65.1 85 43.5
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 3.0e-09 65.1 32 81.2
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 3.0e-09 65.1 32 81.2
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.0e-09 65.1 90 44.4
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 3.0e-09 65.1 32 81.2
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 4.0e-09 64.7 32 84.4
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 4.0e-09 64.7 32 81.2
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 4.0e-09 64.7 32 81.2
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 4.0e-09 64.7 32 81.2
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 4.0e-09 64.7 32 81.2
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 4.0e-09 64.7 32 81.2
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.0e-09 64.7 85 55.3
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.0e-09 64.7 85 43.5
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 4.0e-09 64.7 32 78.1
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.0e-09 64.7 90 46.7
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 4.0e-09 64.7 32 81.2
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 5.2e-09 64.3 32 81.2
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 5.2e-09 64.3 90 44.4
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 5.2e-09 64.3 96 41.7
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 5.2e-09 64.3 98 59.2
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 5.2e-09 64.3 32 81.2
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 5.2e-09 64.3 32 78.1
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 5.2e-09 64.3 86 41.9
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 5.2e-09 64.3 32 81.2
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 5.2e-09 64.3 32 81.2
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 5.2e-09 64.3 85 40.0
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 5.2e-09 64.3 85 40.0
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 6.8e-09 63.9 32 81.2
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 8.9e-09 63.5 32 78.1
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 8.9e-09 63.5 96 52.1
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 8.9e-09 63.5 32 78.1
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 8.9e-09 63.5 32 78.1
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 8.9e-09 63.5 32 78.1
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 8.9e-09 63.5 91 45.1
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 8.9e-09 63.5 32 81.2
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 1.2e-08 63.2 96 40.6
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 1.2e-08 63.2 96 40.6
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 1.2e-08 63.2 96 40.6
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 1.2e-08 63.2 85 62.4
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 1.2e-08 63.2 84 44.0
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.2e-08 63.2 31 83.9
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.2e-08 63.2 32 75.0
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 1.2e-08 63.2 32 78.1
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 1.5e-08 62.8 32 81.2
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.5e-08 62.8 30 86.7
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 1.5e-08 62.8 98 46.9
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 1.5e-08 62.8 85 56.5
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 1.5e-08 62.8 32 81.2
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.5e-08 62.8 32 81.2
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 2.0e-08 62.4 97 51.5
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 2.0e-08 62.4 97 51.5
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 2.0e-08 62.4 85 55.3
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 2.0e-08 62.4 84 50.0
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 2.0e-08 62.4 32 81.2
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.6e-08 62.0 32 81.2
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.6e-08 62.0 32 81.2
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 2.6e-08 62.0 30 83.3
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 2.6e-08 62.0 84 57.1
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.6e-08 62.0 32 81.2
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 3.4e-08 61.6 98 45.9
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 3.4e-08 61.6 85 61.2
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 3.4e-08 61.6 32 78.1
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 3.4e-08 61.6 32 78.1
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.4e-08 61.6 32 78.1
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 4.4e-08 61.2 30 83.3
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 4.4e-08 61.2 32 81.2
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 4.4e-08 61.2 69 47.8
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 4.4e-08 61.2 32 78.1
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 4.4e-08 61.2 32 78.1
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 4.4e-08 61.2 32 78.1
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 4.4e-08 61.2 32 78.1
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 4.4e-08 61.2 32 75.0
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 5.7e-08 60.8 32 78.1
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 5.7e-08 60.8 32 78.1
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 5.7e-08 60.8 32 78.1
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 5.7e-08 60.8 32 78.1
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 5.7e-08 60.8 32 78.1
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 5.7e-08 60.8 32 78.1
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 5.7e-08 60.8 32 78.1
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 5.7e-08 60.8 32 78.1
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 7.5e-08 60.5 32 78.1
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 9.8e-08 60.1 84 50.0
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 9.8e-08 60.1 32 75.0
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 9.8e-08 60.1 30 86.7
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 9.8e-08 60.1 32 78.1
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 9.8e-08 60.1 29 89.7
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 9.8e-08 60.1 86 59.3
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 9.8e-08 60.1 32 75.0
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 1.3e-07 59.7 30 80.0
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.3e-07 59.7 30 80.0
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.3e-07 59.7 32 78.1
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 1.7e-07 59.3 29 86.2
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 1.7e-07 59.3 84 57.1
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.2e-07 58.9 32 75.0
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 2.8e-07 58.5 32 78.1
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 2.8e-07 58.5 32 75.0
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 3.7e-07 58.2 30 83.3
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 4.9e-07 57.8 30 76.7
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 4.9e-07 57.8 32 75.0
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 4.9e-07 57.8 32 75.0
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 4.9e-07 57.8 32 71.9
Potri.012G032500 Populus trichocarpa HOM05D003654 ORTHO05D004176 6.3e-07 57.4 90 52.2
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 8.3e-07 57.0 32 71.9
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.1e-06 56.6 30 76.7
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 1.4e-06 56.2 30 76.7
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 1.8e-06 55.8 83 34.9
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.8e-06 55.8 89 48.3
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 2.4e-06 55.5 32 68.8
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.4e-06 55.5 64 43.8
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.4e-06 55.5 64 43.8
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 2.4e-06 55.5 32 65.6
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 3.1e-06 55.1 82 41.5
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 3.1e-06 55.1 32 75.0
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 3.1e-06 55.1 30 73.3
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 3.1e-06 55.1 32 78.1
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 3.1e-06 55.1 30 73.3
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 4.1e-06 54.7 32 68.8
CSS0025582 Camellia sinensis var. sinensis HOM05D003654 ORTHO05D004176 5.4e-06 54.3 87 47.1
Peaxi162Scf00138g00032 Petunia axillaris HOM05D003654 ORTHO05D004176 7.0e-06 53.9 32 68.8
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 9.2e-06 53.5 28 71.4
Nitab4.5_0000808g0050 Nicotiana tabacum HOM05D003654 ORTHO05D004176 9.2e-06 53.5 32 68.8
Nitab4.5_0005680g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 9.2e-06 53.5 32 68.8
Peaxi162Scf00071g01115 Petunia axillaris HOM05D003654 ORTHO05D004176 9.2e-06 53.5 32 68.8


User provided reference genes

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