Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.8e-169 598.6 312 100.0
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 1.4e-152 543.1 334 88.0
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 7.4e-122 441.0 316 76.6
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 4.5e-119 431.8 308 73.1
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 1.3e-118 430.3 306 73.9
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 1.7e-118 429.9 299 76.9
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 8.5e-118 427.6 303 72.9
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 8.5e-118 427.6 303 72.9
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.9e-117 426.4 303 72.6
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.1e-116 422.9 312 74.0
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 4.6e-116 421.8 303 73.9
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 1.4e-115 420.2 315 73.7
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 1.8e-115 419.9 307 71.3
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 3.9e-115 418.7 309 72.5
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 2.6e-114 416.0 309 72.5
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 4.4e-114 415.2 304 71.1
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 4.4e-114 415.2 279 76.0
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 9.7e-114 414.1 307 72.0
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 9.7e-114 414.1 277 77.3
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 1.3e-113 413.7 311 70.7
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 8.2e-113 411.0 280 81.1
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 1.5e-111 406.8 283 72.8
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.6e-111 406.0 276 74.6
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 2.2e-110 402.9 280 73.6
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 1.1e-109 400.6 310 70.6
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 4.2e-109 398.7 297 71.7
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 7.2e-109 397.9 255 78.0
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 7.2e-109 397.9 283 72.4
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 2.1e-108 396.4 313 68.7
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 4.7e-108 395.2 311 68.5
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 3.0e-107 392.5 307 70.0
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 8.8e-107 391.0 273 74.0
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 1.5e-106 390.2 313 67.1
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 5.7e-106 388.3 262 76.3
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 7.4e-106 387.9 296 68.9
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 1.3e-105 387.1 311 67.2
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 8.2e-105 384.4 261 73.6
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 8.2e-105 384.4 275 72.0
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 1.4e-104 383.6 301 67.8
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 1.4e-104 383.6 311 67.2
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.8e-104 383.3 326 64.7
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.8e-104 383.3 326 64.7
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 2.4e-104 382.9 316 68.0
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 2.4e-104 382.9 299 68.6
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 3.1e-104 382.5 303 66.7
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 7.0e-104 381.3 261 74.3
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 1.2e-103 380.6 309 67.6
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 2.6e-103 379.4 313 65.8
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 2.6e-103 379.4 312 66.7
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 4.5e-103 378.6 309 67.0
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.0e-102 377.5 305 66.9
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.7e-102 376.7 312 67.0
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 2.9e-102 375.9 316 64.6
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 1.5e-101 373.6 307 65.1
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 1.5e-101 373.6 307 65.1
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.9e-101 373.2 305 65.6
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 1.9e-101 373.2 302 65.2
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 3.2e-101 372.5 261 72.0
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 3.2e-101 372.5 253 74.7
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 4.2e-101 372.1 304 65.1
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 5.5e-101 371.7 265 71.7
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 7.2e-101 371.3 304 64.1
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 9.4e-101 370.9 266 70.7
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 9.4e-101 370.9 311 65.0
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 1.6e-100 370.2 309 65.4
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 2.1e-100 369.8 311 64.6
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 2.7e-100 369.4 303 67.7
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 3.6e-100 369.0 265 69.4
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 3.6e-100 369.0 301 66.4
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 4.7e-100 368.6 261 72.4
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 1.0e-99 367.5 297 66.0
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 4.0e-99 365.5 302 62.9
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 8.8e-99 364.4 296 65.5
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 4.4e-98 362.1 305 61.6
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 5.7e-98 361.7 253 71.9
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 7.5e-98 361.3 305 61.0
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 9.7e-98 360.9 256 72.3
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.7e-97 360.1 305 63.3
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 1.7e-97 360.1 298 65.4
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 2.8e-97 359.4 309 60.5
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 2.8e-97 359.4 309 60.5
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 2.8e-97 359.4 236 75.4
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 6.3e-97 358.2 305 62.3
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 8.2e-97 357.8 236 74.6
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 1.1e-96 357.5 309 60.2
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 1.1e-96 357.5 314 61.8
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.4e-96 357.1 298 64.4
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 2.4e-96 356.3 306 61.4
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 7.0e-96 354.8 303 62.0
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.2e-95 354.0 302 60.6
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 2.7e-95 352.8 275 68.7
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 2.9e-94 349.4 297 63.3
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 3.8e-94 349.0 294 64.6
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 8.5e-94 347.8 261 67.4
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 8.5e-94 347.8 311 60.5
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 8.5e-94 347.8 300 63.3
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 4.2e-93 345.5 274 66.8
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 7.2e-93 344.7 304 63.5
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 9.4e-93 344.4 365 54.2
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.2e-92 344.0 300 62.7
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 3.6e-92 342.4 315 60.3
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 6.1e-92 341.7 320 60.0
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 2.3e-91 339.7 257 69.3
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 4.0e-91 339.0 287 63.1
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 4.0e-91 339.0 299 60.2
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.5e-90 337.0 292 63.4
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 2.6e-90 336.3 247 69.2
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 3.4e-90 335.9 288 59.7
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 7.5e-90 334.7 311 58.8
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 1.7e-89 333.6 236 69.9
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 6.3e-89 331.6 258 64.7
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 8.3e-89 331.3 283 65.4
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.4e-88 329.7 312 60.6
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 1.0e-86 324.3 305 57.7
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 6.5e-86 321.6 305 57.0
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 5.5e-85 318.5 314 57.0
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.5e-85 318.5 293 60.4
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 2.1e-84 316.6 333 52.6
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.8e-84 316.2 352 53.4
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 3.6e-84 315.8 240 67.9
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 6.1e-84 315.1 355 53.0
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.0e-83 314.3 298 57.4
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 1.8e-83 313.5 293 57.7
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 1.8e-83 313.5 252 63.9
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 1.5e-82 310.5 230 70.0
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.1e-80 304.3 246 61.4
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 5.9e-79 298.5 299 55.5
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.0e-78 297.7 300 57.3
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 2.9e-78 296.2 255 66.3
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 6.6e-78 295.0 240 60.8
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 8.0e-76 288.1 227 67.0
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 4.0e-67 259.2 222 60.4
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 1.9e-64 250.4 188 71.8
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 2.0e-63 246.9 247 50.2
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 4.6e-63 245.7 321 43.3
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.9e-61 240.4 462 37.2
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 7.3e-61 238.4 173 64.7
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 7.5e-58 228.4 238 52.1
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 7.5e-58 228.4 221 58.4
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.3e-54 216.9 319 44.8
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 1.2e-52 211.1 228 45.6
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 4.0e-51 206.1 143 70.6
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 5.2e-51 205.7 224 47.3
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 2.6e-50 203.4 136 75.0
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 4.3e-45 186.0 189 50.8
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 9.6e-37 158.3 123 65.9
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 6.7e-30 135.6 155 48.4
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 3.0e-22 110.2 131 51.1
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 9.6e-21 105.1 78 66.7
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 8.2e-20 102.1 107 45.8
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 8.7e-14 82.0 76 46.1
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 9.7e-13 78.6 72 59.7
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 2.2e-12 77.4 70 58.6
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 6.3e-12 75.9 230 31.3
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 1.5e-10 71.2 52 65.4
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 2.0e-10 70.9 49 75.5
Hund23427 Selenicereus undatus HOM05D002234 ORTHO05D002254 2.6e-10 70.5 286 28.0
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 7.9e-07 58.9 197 27.9
HPP92_002996 Vanilla planifolia HOM05D004474 ORTHO05D432408 1.3e-06 58.2 79 44.3


User provided reference genes

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