Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G045401 Populus trichocarpa HOM05D002612 ORTHO05D002859 7.9e-70 267.3 168 100.0
Sabra16G0049400 Salix brachista HOM05D002612 ORTHO05D002859 5.5e-31 138.3 79 89.9
Manes.09G035700 Manihot esculenta HOM05D002612 ORTHO05D002859 2.5e-23 112.8 156 43.6
Sabra16G0049300 Salix brachista HOM05D002612 ORTHO05D002859 5.5e-23 111.7 112 55.4
CiPaw.10G026200 Carya illinoinensis HOM05D002612 ORTHO05D002859 1.0e-21 107.5 157 43.3
Cfa020162 Carpinus fangiana HOM05D002612 ORTHO05D002859 5.4e-18 95.1 154 39.6
Prupe.7G077400 Prunus persica HOM05D002612 ORTHO05D002859 3.5e-17 92.4 155 41.3
Thecc.05G171700 Theobroma cacao HOM05D002612 ORTHO05D002859 1.7e-16 90.1 146 40.4
Atru.chr8.1116 Acer truncatum HOM05D002612 ORTHO05D002859 2.3e-16 89.7 134 41.8
Gohir.A09G128100 Gossypium hirsutum HOM05D002612 ORTHO05D002859 5.6e-15 85.1 131 40.5
RcHm_v2.0_Chr3g0479541 Rosa chinensis HOM05D002612 ORTHO05D002859 5.6e-15 85.1 156 37.8
Duzib106G0243 Durio zibethinus HOM05D002612 ORTHO05D002859 7.3e-15 84.7 156 37.2
TWI74G1029 Tripterygium wilfordii HOM05D002612 ORTHO05D002859 7.3e-15 84.7 154 37.0
THA.LOC104802604 Tarenaya hassleriana HOM05D002612 ORTHO05D002859 9.5e-15 84.3 153 35.9
Gohir.D09G124100 Gossypium hirsutum HOM05D002612 ORTHO05D002859 1.6e-14 83.6 131 39.7
Gorai.006G142900 Gossypium raimondii HOM05D002612 ORTHO05D002859 1.6e-14 83.6 131 39.7
MD14G1056500 Malus domestica HOM05D002612 ORTHO05D002859 3.6e-14 82.4 159 39.0
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 4.7e-14 82.0 146 37.0
Ciclev10012465m.g Citrus clementina HOM05D002612 ORTHO05D002859 1.0e-13 80.9 139 36.7
AL4G40440 Arabidopsis lyrata HOM05D002612 ORTHO05D002859 1.4e-13 80.5 156 33.3
Dinv24067 Davidia involucrata HOM05D002612 ORTHO05D002859 6.8e-13 78.2 158 36.1
Sabra06G0147800 Salix brachista HOM05D002612 ORTHO05D002859 8.9e-13 77.8 108 44.4
MD12G1056800 Malus domestica HOM05D002612 ORTHO05D002859 1.5e-12 77.0 155 36.1
Sed0006567 Sechium edule HOM05D002612 ORTHO05D002859 1.5e-12 77.0 151 37.7
GSVIVG01033493001 Vitis vinifera HOM05D002612 ORTHO05D002859 1.5e-12 77.0 151 37.7
AT2G42080 Arabidopsis thaliana HOM05D002612 ORTHO05D002859 2.0e-12 76.6 156 31.4
Peaxi162Scf00258g00631 Petunia axillaris HOM05D002612 ORTHO05D002859 2.0e-12 76.6 144 38.2
TAR623G0372 Trochodendron aralioides HOM05D002612 ORTHO05D002859 2.6e-12 76.3 151 33.1
Carub.0004s2442 Capsella rubella HOM05D002612 ORTHO05D002859 3.4e-12 75.9 153 32.7
Eucgr.K01842 Eucalyptus grandis HOM05D002612 ORTHO05D002859 3.4e-12 75.9 136 36.8
TPR.G32347 Trifolium pratense HOM05D002612 ORTHO05D002859 3.4e-12 75.9 147 34.7
Lalb_Chr18g0047881 Lupinus albus HOM05D002612 ORTHO05D002859 4.4e-12 75.5 147 35.4
CsaV3_3G038780 Cucumis sativus L. HOM05D002612 ORTHO05D002859 5.7e-12 75.1 143 33.6
Sed0010869 Sechium edule HOM05D002612 ORTHO05D002859 5.7e-12 75.1 152 35.5
FvH4_6g22210 Fragaria vesca HOM05D002612 ORTHO05D002859 1.3e-11 73.9 155 34.2
Actinidia22037 Actinidia chinensis HOM05D002612 ORTHO05D002859 1.7e-11 73.6 159 33.3
arahy.Tifrunner.gnm1.ann1.47DXFL Arachis hypogaea HOM05D002612 ORTHO05D002859 1.7e-11 73.6 129 36.4
arahy.Tifrunner.gnm1.ann1.J786L6 Arachis hypogaea HOM05D002612 ORTHO05D002859 1.7e-11 73.6 129 36.4
Duzib128G1439 Durio zibethinus HOM05D002612 ORTHO05D002859 1.7e-11 73.6 154 33.8
Hma1.2p1_0676F.1_g201950 Hydrangea macrophylla HOM05D002612 ORTHO05D002859 1.7e-11 73.6 155 34.8
Hund19204 Selenicereus undatus HOM05D002612 ORTHO05D002859 2.9e-11 72.8 147 36.1
FAN14G2805 Fragaria x ananassa HOM05D002612 ORTHO05D002859 6.4e-11 71.6 156 34.0
CARHR137160 Cardamine hirsuta HOM05D002612 ORTHO05D002859 8.3e-11 71.2 148 33.8
Thhalv10017091m.g Eutrema salsugineum HOM05D002612 ORTHO05D002859 8.3e-11 71.2 153 31.4
FAN14G3252 Fragaria x ananassa HOM05D002612 ORTHO05D002859 8.3e-11 71.2 155 34.2
Glyma.02G172700 Glycine max HOM05D002612 ORTHO05D002859 1.1e-10 70.9 126 38.1
Nitab4.5_0002488g0060 Nicotiana tabacum HOM05D002612 ORTHO05D002859 1.1e-10 70.9 145 36.6
Psat6g091240 Pisum sativum HOM05D002612 ORTHO05D002859 1.4e-10 70.5 159 33.3
Sp4g24300 Schrenkiella parvula HOM05D002612 ORTHO05D002859 1.4e-10 70.5 152 31.6
Ca_12071_v3 Cicer arietinum L. HOM05D002612 ORTHO05D002859 2.4e-10 69.7 159 34.6
ClCG10G017560 Citrullus lanatus HOM05D002612 ORTHO05D002859 2.4e-10 69.7 205 28.3
PGR142G1191 Punica granatum HOM05D002612 ORTHO05D002859 5.4e-10 68.6 134 35.1
Haze_19994 Corylus avellana HOM05D002612 ORTHO05D002859 9.2e-10 67.8 79 49.4
C04p03250 Brassica napus HOM05D002612 ORTHO05D002859 2.0e-09 66.6 156 30.8
BolC4t21963H Brassica oleracea HOM05D002612 ORTHO05D002859 2.0e-09 66.6 156 30.8
Nitab4.5_0000324g0010 Nicotiana tabacum HOM05D002612 ORTHO05D002859 2.7e-09 66.2 152 35.5
BcaC02g07265 Brassica carinata HOM05D002612 ORTHO05D002859 1.0e-08 64.3 144 33.3
Sc13g0002290 Simmondsia chinensis HOM05D002612 ORTHO05D002859 1.3e-08 63.9 158 32.3
AUR62015364 Chenopodium quinoa HOM05D002612 ORTHO05D002859 1.7e-08 63.5 149 31.5
Glyma.19G148000 Glycine max HOM05D002612 ORTHO05D002859 1.7e-08 63.5 129 37.2
MBI06_g15023_MAGBIO Magnolia biondii HOM05D002612 ORTHO05D002859 2.3e-08 63.2 137 32.8
AUR62012027 Chenopodium quinoa HOM05D002612 ORTHO05D002859 3.0e-08 62.8 149 30.9
Aqoxy2G00058 Aquilegia oxysepala HOM05D002612 ORTHO05D002859 3.9e-08 62.4 159 32.7
CAN.G570.9 Capsicum annuum HOM05D002612 ORTHO05D002859 3.9e-08 62.4 140 35.0
Sopen03g016040 Solanum pennellii HOM05D002612 ORTHO05D002859 5.0e-08 62.0 138 30.4
A04p31980 Brassica napus HOM05D002612 ORTHO05D002859 6.6e-08 61.6 144 31.9
BraA04t18656Z Brassica rapa HOM05D002612 ORTHO05D002859 6.6e-08 61.6 144 31.9
QL07p023812 Quercus lobata HOM05D002612 ORTHO05D002859 6.6e-08 61.6 80 48.8
A05p02720 Brassica napus HOM05D002612 ORTHO05D002859 8.6e-08 61.2 148 31.8
Solyc03g063350.3 Solanum lycopersicum HOM05D002612 ORTHO05D002859 8.6e-08 61.2 138 30.4
BraA05t19264Z Brassica rapa HOM05D002612 ORTHO05D002859 1.1e-07 60.8 148 31.8
EL10Ac3g06912 Beta vulgaris HOM05D002612 ORTHO05D002859 1.5e-07 60.5 135 31.1
BcaB06g29225 Brassica carinata HOM05D002612 ORTHO05D002859 1.5e-07 60.5 157 30.6
C04p69490 Brassica napus HOM05D002612 ORTHO05D002859 1.9e-07 60.1 144 31.9
BolC4t28448H Brassica oleracea HOM05D002612 ORTHO05D002859 1.9e-07 60.1 144 31.9
Rhsim03G0005800 Rhododendron simsii HOM05D002612 ORTHO05D002859 1.9e-07 60.1 78 44.9
CANSAT64G1369 Cannabis sativa HOM05D002612 ORTHO05D002859 7.3e-07 58.2 148 33.1
Oeu033736.1 Olea europaea HOM05D002612 ORTHO05D002859 7.3e-07 58.2 153 32.7
VMungo1383G3725 Vigna mungo HOM05D002612 ORTHO05D002859 7.3e-07 58.2 127 35.4
Cc06_g15900 Coffea canephora HOM05D002612 ORTHO05D002859 1.2e-06 57.4 146 30.1
MSTRG.19906 Avicennia marina HOM05D002612 ORTHO05D002859 1.6e-06 57.0 140 30.0
Lj5g0018767 Lotus japonicus HOM05D002612 ORTHO05D002859 2.1e-06 56.6 148 33.1
ATR0807G015 Amborella trichopoda HOM05D002612 ORTHO05D002859 3.6e-06 55.8 63 50.8


User provided reference genes

Program Settings