Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G038300 Populus trichocarpa HOM05D008360 ORTHO05D010532 3.4e-21 104.0 49 100.0
Potri.006G041600 Populus trichocarpa HOM05D008360 ORTHO05D010532 1.7e-17 91.7 49 87.8
CiPaw.09G045700 Carya illinoinensis HOM05D008360 ORTHO05D010532 5.0e-17 90.1 49 83.7
RcHm_v2.0_Chr3g0476891 Rosa chinensis HOM05D008360 ORTHO05D010532 6.6e-17 89.7 49 83.7
Duzib093G1186 Durio zibethinus HOM05D008360 ORTHO05D010532 8.6e-17 89.4 49 79.6
Hma1.2p1_1048F.1_g251690 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 1.9e-16 88.2 49 81.6
Thecc.05G140600 Theobroma cacao HOM05D008360 ORTHO05D010532 1.9e-16 88.2 49 79.6
Duzib106G1984 Durio zibethinus HOM05D008360 ORTHO05D010532 5.6e-16 86.7 49 77.6
Manes.09G007500 Manihot esculenta HOM05D008360 ORTHO05D010532 7.3e-16 86.3 49 77.6
CAN.G1237.40 Capsicum annuum HOM05D008360 ORTHO05D010532 1.6e-15 85.1 49 77.6
Dinv34381 Davidia involucrata HOM05D008360 ORTHO05D010532 2.1e-15 84.7 47 80.9
Prupe.7G043000 Prunus persica HOM05D008360 ORTHO05D010532 2.8e-15 84.3 49 75.5
Cc06_g18840 Coffea canephora HOM05D008360 ORTHO05D010532 3.6e-15 84.0 49 73.5
FAN14G5043 Fragaria x ananassa HOM05D008360 ORTHO05D010532 6.2e-15 83.2 47 74.5
Nitab4.5_0002162g0190 Nicotiana tabacum HOM05D008360 ORTHO05D010532 6.2e-15 83.2 46 78.3
ECA248G1201 Erigeron canadensis HOM05D001008 ORTHO05D009098 1.0e-14 82.4 46 78.3
FAN09G2365 Fragaria x ananassa HOM05D008360 ORTHO05D010532 1.0e-14 82.4 47 74.5
RcHm_v2.0_Chr3g0476991 Rosa chinensis HOM05D008360 ORTHO05D010532 1.0e-14 82.4 45 82.2
Manes.08G057500 Manihot esculenta HOM05D008360 ORTHO05D010532 1.4e-14 82.0 49 73.5
Sabra06G0028300 Salix brachista HOM05D008360 ORTHO05D010532 1.4e-14 82.0 43 86.0
COL.COLO4_37957 Corchorus olitorius HOM05D008360 ORTHO05D010532 2.3e-14 81.3 49 75.5
AUR62031993 Chenopodium quinoa HOM05D000009 ORTHO05D000008 5.2e-14 80.1 46 73.9
Hund24629 Selenicereus undatus HOM05D008360 ORTHO05D010532 5.2e-14 80.1 47 74.5
Phvul.001G125600 Phaseolus vulgaris HOM05D008360 ORTHO05D010532 2.0e-13 78.2 49 73.5
Solyc04g040000.2 Solanum lycopersicum HOM05D008360 ORTHO05D010532 2.0e-13 78.2 46 71.7
arahy.Tifrunner.gnm1.ann1.LHUB84 Arachis hypogaea HOM05D008360 ORTHO05D010532 4.4e-13 77.0 47 72.3
Gohir.A09G118500 Gossypium hirsutum HOM05D008360 ORTHO05D010532 1.3e-12 75.5 49 71.4
Gohir.D09G115400 Gossypium hirsutum HOM05D008360 ORTHO05D010532 1.3e-12 75.5 49 71.4
Gorai.006G133100 Gossypium raimondii HOM05D008360 ORTHO05D010532 1.3e-12 75.5 49 71.4
unitig_8.g3490 Utricularia gibba HOM05D008360 ORTHO05D010532 3.7e-12 73.9 47 66.0
Lj1g0003695 Lotus japonicus HOM05D008360 ORTHO05D010532 4.9e-12 73.6 47 66.0
CSS0042665 Camellia sinensis var. sinensis HOM05D008360 ORTHO05D010532 6.4e-12 73.2 46 69.6
Aa31LG10G11990 Aethionema arabicum HOM05D008360 ORTHO05D010532 1.1e-11 72.4 49 65.3
Medtr7g090260 Medicago truncatula HOM05D008360 ORTHO05D010532 1.4e-11 72.0 48 64.6
Migut.K00128 Erythranthe guttata HOM05D008360 ORTHO05D010532 2.4e-11 71.2 49 65.3
Carub.0005s2387 Capsella rubella HOM05D008360 ORTHO05D010532 7.0e-11 69.7 49 61.2
CARHR167260 Cardamine hirsuta HOM05D008360 ORTHO05D010532 7.0e-11 69.7 49 61.2
A09p49990 Brassica napus HOM05D008360 ORTHO05D010532 9.2e-11 69.3 49 63.3
C08p32400 Brassica napus HOM05D008360 ORTHO05D010532 9.2e-11 69.3 49 63.3
BolC8t50854H Brassica oleracea HOM05D008360 ORTHO05D010532 9.2e-11 69.3 49 63.3
BraA09t40449Z Brassica rapa HOM05D008360 ORTHO05D010532 9.2e-11 69.3 49 63.3
AL5G38550 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 1.2e-10 68.9 49 61.2
AT3G57062 Arabidopsis thaliana HOM05D008360 ORTHO05D010532 1.2e-10 68.9 49 61.2
Migut.J01675 Erythranthe guttata HOM05D008360 ORTHO05D010532 1.6e-10 68.6 47 66.0
THA.LOC104824413 Tarenaya hassleriana HOM05D008360 ORTHO05D010532 1.6e-10 68.6 49 59.2
Thhalv10006358m.g Eutrema salsugineum HOM05D008360 ORTHO05D010532 2.0e-10 68.2 49 61.2
Lalb_Chr20g0110161 Lupinus albus HOM05D008360 ORTHO05D010532 2.7e-10 67.8 50 72.0
Lalb_Chr25g0286871 Lupinus albus HOM05D008360 ORTHO05D010532 2.7e-10 67.8 46 69.6
PSO384G3670 Papaver somniferum HOM05D008360 ORTHO05D010532 4.6e-10 67.0 49 59.2
Hma1.2p1_1048F.1_g251680 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 1.3e-09 65.5 49 63.3
Actinidia17687 Actinidia chinensis HOM05D008360 ORTHO05D010532 3.9e-09 63.9 39 71.8
BcaC02g12894 Brassica carinata HOM05D008360 ORTHO05D010532 1.9e-08 61.6 49 57.1
RcHm_v2.0_Chr3g0477841 Rosa chinensis HOM05D008360 ORTHO05D010532 5.6e-08 60.1 30 90.0
Os03g0810500 Oryza sativa ssp. japonica HOM05D008360 ORTHO05D010532 7.3e-08 59.7 49 55.1
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 1.6e-07 58.5 37 64.9
AL4G39310 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 2.8e-07 57.8 49 51.0
Os07g0213500 Oryza sativa ssp. japonica HOM05D008360 ORTHO05D010532 6.2e-07 56.6 49 49.0
Carub.0004s2362 Capsella rubella HOM05D008360 ORTHO05D010532 2.3e-06 54.7 49 51.0


User provided reference genes

Program Settings