Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 5.9e-133 477.6 256 100.0
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 4.1e-110 401.7 256 81.6
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.6e-101 373.2 264 81.4
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 5.9e-101 371.3 260 78.5
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 1.3e-68 263.8 258 60.5
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 3.0e-68 262.7 261 60.2
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 1.9e-67 260.0 261 59.8
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 5.6e-67 258.5 263 56.7
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 6.8e-65 251.5 261 57.5
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 4.9e-63 245.4 257 55.6
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 4.1e-62 242.3 260 59.6
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 1.6e-61 240.4 257 58.4
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 1.7e-60 236.9 264 58.3
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 1.5e-59 233.8 256 57.0
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 1.5e-59 233.8 276 54.3
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 2.5e-59 233.0 260 55.4
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 1.1e-57 227.6 266 54.1
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 1.8e-57 226.9 263 51.7
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 2.4e-57 226.5 257 57.6
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 1.5e-56 223.8 276 52.2
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 2.6e-56 223.0 269 52.0
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 3.4e-56 222.6 266 53.4
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 4.4e-56 222.2 280 52.5
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 7.6e-56 221.5 253 51.8
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 1.4e-54 217.2 259 53.3
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 1.4e-54 217.2 256 54.3
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 3.2e-54 216.1 260 52.7
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 1.0e-52 211.1 277 51.6
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 6.6e-52 208.4 239 54.8
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 1.5e-51 207.2 279 51.6
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 4.3e-51 205.7 261 50.6
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 5.6e-51 205.3 265 51.7
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 5.6e-51 205.3 283 51.2
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.2e-50 204.1 254 51.2
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 2.8e-50 203.0 265 51.3
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 3.6e-50 202.6 275 49.1
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 4.7e-50 202.2 280 51.1
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.1e-49 201.1 275 48.4
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 1.8e-49 200.3 264 56.4
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 2.4e-49 199.9 260 50.4
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 1.2e-48 197.6 275 49.5
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 1.5e-48 197.2 270 51.1
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 2.2e-47 193.4 266 48.9
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 2.9e-47 193.0 265 49.1
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 4.2e-46 189.1 275 47.6
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 1.2e-45 187.6 269 47.2
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 1.2e-45 187.6 275 49.8
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 2.1e-45 186.8 201 55.2
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.0e-44 184.5 284 48.6
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.5e-43 180.6 261 49.0
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.3e-43 179.5 261 49.0
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 9.6e-43 177.9 261 47.5
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.1e-42 176.8 261 47.5
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 5.3e-41 172.2 268 46.6
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 5.3e-41 172.2 263 47.9
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 2.0e-40 170.2 261 51.3
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 9.9e-40 167.9 196 54.6
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 9.9e-40 167.9 261 44.8
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 9.9e-40 167.9 257 45.9
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 4.9e-39 165.6 257 44.0
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 6.4e-39 165.2 268 50.0
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 8.4e-39 164.9 258 46.1
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.4e-38 164.1 257 43.2
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.9e-38 163.7 258 46.1
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.2e-38 162.9 257 42.8
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 5.4e-38 162.2 257 42.8
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 7.1e-38 161.8 261 45.6
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 1.2e-37 161.0 270 43.3
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 1.2e-37 161.0 270 43.3
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.6e-37 160.6 254 46.5
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 2.7e-37 159.8 254 44.5
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 3.5e-37 159.5 254 43.7
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.0e-36 157.9 265 44.5
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 2.3e-36 156.8 256 46.9
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 5.1e-36 155.6 180 58.9
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 6.7e-36 155.2 255 44.7
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 1.5e-35 154.1 253 42.3
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 1.9e-35 153.7 264 43.6
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 2.5e-35 153.3 256 44.1
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 2.5e-35 153.3 254 43.3
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 7.4e-35 151.8 253 41.9
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 9.6e-35 151.4 265 41.5
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 9.6e-35 151.4 254 44.9
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.3e-34 151.0 252 42.9
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 2.1e-34 150.2 263 42.6
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 2.8e-34 149.8 270 41.5
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 2.8e-34 149.8 263 42.6
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 3.7e-34 149.4 260 45.4
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 4.8e-34 149.1 270 41.5
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 4.8e-34 149.1 270 41.5
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 6.2e-34 148.7 266 41.4
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 8.1e-34 148.3 258 42.6
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 8.1e-34 148.3 276 40.6
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 1.8e-33 147.1 264 40.9
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 1.8e-33 147.1 264 40.9
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 1.8e-33 147.1 264 40.9
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 1.8e-33 147.1 263 43.3
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 1.8e-33 147.1 276 40.6
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 6.9e-33 145.2 273 40.7
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 2.0e-32 143.7 275 44.0
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 3.4e-32 142.9 271 40.2
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 5.8e-32 142.1 274 40.5
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 7.6e-32 141.7 257 43.2
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 9.9e-32 141.4 273 39.2
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 1.3e-31 141.0 274 41.2
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 2.2e-31 140.2 277 37.9
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 2.9e-31 139.8 259 40.5
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 3.8e-31 139.4 260 40.8
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 4.9e-31 139.0 262 42.4
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.1e-30 137.9 273 38.1
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 2.5e-30 136.7 263 41.1
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 7.1e-30 135.2 272 37.9
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 9.3e-30 134.8 265 38.1
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 3.5e-29 132.9 269 38.7
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 4.6e-29 132.5 262 35.9
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 1.0e-28 131.3 265 37.7
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 1.0e-28 131.3 265 37.7
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.3e-28 131.0 201 45.8
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 8.7e-28 128.3 169 47.3
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 2.5e-27 126.7 261 38.3
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.3e-27 126.3 257 37.0
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 4.3e-27 125.9 175 48.0
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 4.3e-27 125.9 268 36.9
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 4.3e-27 125.9 258 36.8
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 7.4e-27 125.2 257 37.0
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.3e-26 124.4 200 40.5
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 1.6e-26 124.0 191 47.6
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 3.7e-26 122.9 257 37.4
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 1.4e-25 120.9 186 46.2
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 1.4e-25 120.9 257 39.7
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 5.3e-25 119.0 255 40.0
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 1.5e-24 117.5 263 39.9
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 3.4e-24 116.3 266 37.6
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 5.8e-24 115.5 155 48.4
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 7.6e-24 115.2 203 41.4
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 1.3e-23 114.4 247 40.5
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.7e-23 114.0 239 38.1
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 2.2e-23 113.6 198 44.9
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 2.9e-23 113.2 200 41.5
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 1.9e-22 110.5 215 40.9
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 2.5e-22 110.2 162 46.9
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 7.1e-22 108.6 262 34.7
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 3.0e-20 103.2 158 43.7
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 1.5e-19 100.9 242 36.0
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 9.7e-19 98.2 257 37.4
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 2.2e-18 97.1 263 34.2
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 6.3e-18 95.5 265 32.5
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 6.9e-17 92.0 198 36.4
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 7.7e-16 88.6 254 34.3
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.9e-15 86.7 232 34.5
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.1e-13 80.5 193 35.8
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 6.1e-13 79.0 145 40.0
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 3.0e-12 76.6 205 32.2
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 5.1e-12 75.9 155 40.6
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 8.8e-12 75.1 159 37.1
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 8.2e-10 68.6 79 57.0
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 4.1e-09 66.2 80 47.5
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 1.2e-08 64.7 143 34.3
unitig_744.g24165 Utricularia gibba HOM05D004369 ORTHO05D004907 4.5e-08 62.8 114 39.5
Os07g0686600 Oryza sativa ssp. japonica HOM05D015271 ORTHO05D020944 1.3e-07 61.2 95 41.1
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 1.3e-07 61.2 138 39.1
Os12g0127800 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 1.7e-07 60.8 150 31.3
VMungo0540G2275 Vigna mungo HOM05D001711 ORTHO05D002847 7.2e-06 55.5 143 35.7


User provided reference genes

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