Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 9.1e-70 266.9 148 100.0
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 3.1e-62 241.9 148 91.2
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 7.5e-56 220.7 177 75.1
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 1.6e-29 133.3 152 59.9
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 3.5e-29 132.1 153 58.8
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 5.0e-28 128.3 162 54.9
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 2.1e-26 122.9 149 59.1
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 4.7e-26 121.7 151 54.3
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 2.3e-25 119.4 142 55.6
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 3.1e-25 119.0 157 58.0
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 8.9e-25 117.5 153 52.9
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 1.7e-23 113.2 153 55.6
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 2.9e-23 112.5 117 62.4
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 2.9e-23 112.5 155 56.1
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 6.4e-23 111.3 151 53.6
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 1.2e-21 107.1 159 50.3
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 2.1e-21 106.3 110 61.8
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 6.0e-21 104.8 143 53.1
Glyma.19G124900 Glycine max HOM05D005060 ORTHO05D005975 7.8e-21 104.4 139 56.8
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 1.0e-20 104.0 147 51.0
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 1.0e-20 104.0 151 53.0
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 1.7e-20 103.2 156 48.1
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 5.1e-20 101.7 146 52.7
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 6.6e-20 101.3 148 48.6
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 6.6e-20 101.3 141 53.9
Lj1C23T21 Lonicera japonica HOM05D005060 ORTHO05D005975 1.5e-19 100.1 119 53.8
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 3.3e-19 99.0 154 49.4
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 1.2e-18 97.1 138 46.4
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.6e-18 96.7 148 50.0
Nn7g37114 Nelumbo nucifera HOM05D005060 ORTHO05D005975 2.8e-18 95.9 148 52.0
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 3.6e-18 95.5 147 49.7
TWI74G0004 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 4.7e-18 95.1 142 47.2
PSO339G2385 Papaver somniferum HOM05D005060 ORTHO05D005975 6.2e-18 94.7 144 45.8
FAN01G1650 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.1e-17 94.0 146 50.7
Gohir.D01G177000 Gossypium hirsutum HOM05D005060 ORTHO05D005975 1.1e-17 94.0 151 51.0
Gorai.002G226200 Gossypium raimondii HOM05D005060 ORTHO05D005975 1.1e-17 94.0 151 51.0
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 1.8e-17 93.2 89 57.3
TAR369G0553 Trochodendron aralioides HOM05D005060 ORTHO05D005975 3.1e-17 92.4 148 48.0
Gohir.A01G192800 Gossypium hirsutum HOM05D005060 ORTHO05D005975 6.8e-17 91.3 151 50.3
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 6.8e-17 91.3 149 49.7
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 8.9e-17 90.9 158 50.6
SGA_v2.0_scaffold66G22311 Striga asiatica HOM05D005060 ORTHO05D005975 8.9e-17 90.9 152 46.7
FAN10G4368 Fragaria x ananassa HOM05D002241 ORTHO05D002458 3.4e-16 89.0 149 50.3
Eucgr.A02181 Eucalyptus grandis HOM05D005060 ORTHO05D005975 4.4e-16 88.6 149 45.0
Potri.006G029500 Populus trichocarpa HOM05D005060 ORTHO05D005975 7.5e-16 87.8 150 45.3
Solyc10g081100.3 Solanum lycopersicum HOM05D005060 ORTHO05D005975 1.3e-15 87.0 143 44.8
FvH4_7g05170 Fragaria vesca HOM05D005060 ORTHO05D005975 1.7e-15 86.7 106 54.7
FAN06G0894 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.7e-15 86.7 106 54.7
FAN06G1820 Fragaria x ananassa HOM05D002241 ORTHO05D002458 1.7e-15 86.7 106 54.7
PSO384G0259 Papaver somniferum HOM05D005060 ORTHO05D005975 1.7e-15 86.7 144 44.4
PGSC0003DMG400028107 Solanum tuberosum HOM05D005060 ORTHO05D005975 2.9e-15 85.9 143 44.8
A09p49780 Brassica napus HOM05D005060 ORTHO05D005975 3.7e-15 85.5 151 47.7
BraA09t40431Z Brassica rapa HOM05D005060 ORTHO05D005975 3.7e-15 85.5 151 47.7
arahy.Tifrunner.gnm1.ann1.U3TF2Z Arachis hypogaea HOM05D005060 ORTHO05D005975 4.9e-15 85.1 62 79.0
GSVIVG01025849001 Vitis vinifera HOM05D005060 ORTHO05D005975 4.9e-15 85.1 126 48.4
Nitab4.5_0000062g0300 Nicotiana tabacum HOM05D005060 ORTHO05D005975 6.4e-15 84.7 132 45.5
Sopen10g031600 Solanum pennellii HOM05D005060 ORTHO05D005975 6.4e-15 84.7 143 44.1
Medtr7g088520 Medicago truncatula HOM05D005060 ORTHO05D005975 8.3e-15 84.3 154 44.8
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 1.1e-14 84.0 140 42.1
BcaC07g40003 Brassica carinata HOM05D005060 ORTHO05D005975 1.9e-14 83.2 151 46.4
C08p32160 Brassica napus HOM05D005060 ORTHO05D005975 1.9e-14 83.2 151 46.4
BolC8t50834H Brassica oleracea HOM05D005060 ORTHO05D005975 1.9e-14 83.2 151 46.4
Thecc.05G132800 Theobroma cacao HOM05D005060 ORTHO05D005975 1.9e-14 83.2 151 49.0
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 2.4e-14 82.8 147 43.5
Duzib093G0151 Durio zibethinus HOM05D005060 ORTHO05D005975 3.2e-14 82.4 150 47.3
BraA07t29972Z Brassica rapa HOM05D000531 ORTHO05D001630 4.1e-14 82.0 149 45.0
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 5.4e-14 81.6 150 44.7
Haze_20302 Corylus avellana HOM05D005060 ORTHO05D005975 1.2e-13 80.5 144 41.7
AT3G56910 Arabidopsis thaliana HOM05D005060 ORTHO05D005975 1.6e-13 80.1 154 47.4
MBI19_g25016_MAGBIO Magnolia biondii HOM05D005060 ORTHO05D005975 2.1e-13 79.7 119 48.7
A07p23120 Brassica napus HOM05D005060 ORTHO05D005975 3.5e-13 79.0 153 49.0
BcaC08g44810 Brassica carinata HOM05D005060 ORTHO05D005975 6.0e-13 78.2 91 56.0
Glyma.03G120300 Glycine max HOM05D005060 ORTHO05D005975 6.0e-13 78.2 151 47.0
Manes.08G066600 Manihot esculenta HOM05D005060 ORTHO05D005975 6.0e-13 78.2 145 40.0
BcaC02g09878 Brassica carinata HOM05D005060 ORTHO05D005975 7.8e-13 77.8 151 45.7
C04p35630 Brassica napus HOM05D005060 ORTHO05D005975 7.8e-13 77.8 151 45.7
BolC4t25241H Brassica oleracea HOM05D005060 ORTHO05D005975 7.8e-13 77.8 151 45.7
arahy.Tifrunner.gnm1.ann1.3R5KQS Arachis hypogaea HOM05D005060 ORTHO05D005975 1.3e-12 77.0 150 45.3
Migut.J01559 Erythranthe guttata HOM05D005060 ORTHO05D005975 1.3e-12 77.0 150 43.3
CANSAT78G0005 Cannabis sativa HOM05D005060 ORTHO05D005975 1.7e-12 76.6 149 47.7
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 1.7e-12 76.6 90 55.6
CiPaw.10G123900 Carya illinoinensis HOM05D005060 ORTHO05D005975 2.3e-12 76.3 93 58.1
ECA236G1981 Erigeron canadensis HOM05D005060 ORTHO05D005975 3.0e-12 75.9 148 41.9
CARHR167060 Cardamine hirsuta HOM05D005060 ORTHO05D005975 3.9e-12 75.5 154 45.5
Psat3g082360 Pisum sativum HOM05D005060 ORTHO05D005975 5.1e-12 75.1 146 44.5
DCAR_009091 Daucus carota HOM05D005060 ORTHO05D005975 6.6e-12 74.7 143 44.1
Sp5g05680 Schrenkiella parvula HOM05D005060 ORTHO05D005975 6.6e-12 74.7 154 44.8
MSTRG.6293 Avicennia marina HOM05D005060 ORTHO05D005975 1.1e-11 73.9 150 43.3
QL07p014517 Quercus lobata HOM05D005060 ORTHO05D005975 2.5e-11 72.8 128 41.4
A04p03610 Brassica napus HOM05D005060 ORTHO05D005975 4.3e-11 72.0 151 44.4
Aqoxy1G00045 Aquilegia oxysepala HOM05D005060 ORTHO05D005975 5.6e-11 71.6 148 43.9
Cpa.g.sc33.198 Carica papaya HOM05D005060 ORTHO05D005975 7.3e-11 71.2 149 44.3
Manes.13G072000 Manihot esculenta HOM05D005060 ORTHO05D005975 9.5e-11 70.9 140 42.1
ATR0787G086 Amborella trichopoda HOM05D005060 ORTHO05D005975 1.2e-10 70.5 147 42.9
Os01g0278900 Oryza sativa ssp. japonica HOM05D005060 ORTHO05D005975 1.2e-10 70.5 155 40.0
HanXRQChr05g0130501 Helianthus annuus HOM05D005060 ORTHO05D005975 1.6e-10 70.1 110 44.5
Potri.006G028500 Populus trichocarpa HOM05D005060 ORTHO05D005975 2.1e-10 69.7 150 40.7
Sc13g0000780 Simmondsia chinensis HOM05D005060 ORTHO05D005975 2.8e-10 69.3 118 45.8
Sabra16G0031500 Salix brachista HOM05D002460 ORTHO05D016446 8.1e-10 67.8 35 91.4
Carub.0005s2365 Capsella rubella HOM05D005060 ORTHO05D005975 1.1e-09 67.4 155 43.9
Oeu023007.1 Olea europaea HOM05D005060 ORTHO05D005975 1.1e-09 67.4 145 42.8
SGA_v2.0_scaffold69G23194 Striga asiatica HOM05D005060 ORTHO05D005975 1.8e-09 66.6 103 48.5
VMungo0331G0467 Vigna mungo HOM05D005060 ORTHO05D005975 1.8e-09 66.6 137 47.4
AL5G38310 Arabidopsis lyrata HOM05D005060 ORTHO05D005975 2.4e-09 66.2 154 41.6
Hund24512 Selenicereus undatus HOM05D005060 ORTHO05D005975 3.1e-09 65.9 141 41.1
BcaB02g08343 Brassica carinata HOM05D005060 ORTHO05D005975 5.2e-09 65.1 153 43.1
CSS0016899 Camellia sinensis var. sinensis HOM05D005060 ORTHO05D005975 5.2e-09 65.1 152 41.4
Peaxi162Scf00153g01321 Petunia axillaris HOM05D005060 ORTHO05D005975 5.2e-09 65.1 146 40.4
Sabra06G0020700 Salix brachista HOM05D005060 ORTHO05D005975 1.5e-08 63.5 182 39.6
Hma1.2p1_0031F.1_g018400 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 4.4e-08 62.0 87 54.0
Hma1.2p1_2089F.1_g313840 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 4.4e-08 62.0 87 54.0
Actinidia05489 Actinidia chinensis HOM05D005060 ORTHO05D005975 7.6e-08 61.2 43 76.7
Ah.04g150220 Amaranthus hybridus HOM05D005060 ORTHO05D005975 9.9e-08 60.8 96 45.8
CiPaw.09G163900 Carya illinoinensis HOM05D005060 ORTHO05D005975 2.9e-07 59.3 111 36.0
EL10Ac3g07347 Beta vulgaris HOM05D005060 ORTHO05D005975 1.4e-06 57.0 94 48.9
SGA_v2.0_scaffold104G30067 Striga asiatica HOM05D005060 ORTHO05D005975 1.9e-06 56.6 74 44.6
CAN.G959.26 Capsicum annuum HOM05D005060 ORTHO05D005975 2.4e-06 56.2 120 38.3
Cc06_g22810 Coffea canephora HOM05D005060 ORTHO05D005975 3.2e-06 55.8 158 38.6
Atru.chr1.1518 Acer truncatum HOM05D005060 ORTHO05D005975 5.4e-06 55.1 149 39.6
Ah.13g077380 Amaranthus hybridus HOM05D005060 ORTHO05D005975 5.4e-06 55.1 142 38.0
BcaC07g40108 Brassica carinata HOM05D005060 ORTHO05D005975 7.1e-06 54.7 145 39.3
Ciclev10013042m.g Citrus clementina HOM05D005060 ORTHO05D005975 9.2e-06 54.3 156 39.1
Duzib128G1851 Durio zibethinus HOM05D005060 ORTHO05D005975 9.2e-06 54.3 149 37.6
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 9.2e-06 54.3 87 44.8


User provided reference genes

Program Settings