Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G026801 Populus trichocarpa HOM05D000455 ORTHO05D000434 3.2e-98 361.7 173 100.0
Sabra16G0031800 Salix brachista HOM05D000030 ORTHO05D000009 2.6e-28 129.4 88 70.5
Sabra16G0032100 Salix brachista HOM05D000030 ORTHO05D000009 2.6e-28 129.4 88 70.5
Sabra16G0031600 Salix brachista HOM05D002043 ORTHO05D000009 3.5e-28 129.0 86 70.9
Potri.016G026066 Populus trichocarpa HOM05D000030 ORTHO05D000009 6.1e-17 91.7 54 85.2
Sabra16G0032300 Salix brachista HOM05D000030 ORTHO05D000009 3.5e-12 75.9 88 48.9
Sabra07G0120300 Salix brachista HOM05D000455 ORTHO05D000434 1.2e-09 67.4 74 48.6
COL.COLO4_28379 Corchorus olitorius HOM05D000455 ORTHO05D000434 2.1e-09 66.6 88 44.3
SalBow6G6638 Salvia bowleyana HOM05D000455 ORTHO05D000434 3.6e-09 65.9 96 40.6
Cpa.g.sc9.328 Carica papaya HOM05D000455 ORTHO05D000434 4.7e-09 65.5 110 39.1
Rhsim02G0082800 Rhododendron simsii HOM05D000455 ORTHO05D000434 4.7e-09 65.5 91 40.7
CSS0027337 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 6.1e-09 65.1 97 40.2
Manes.11G127000 Manihot esculenta HOM05D000455 ORTHO05D000434 6.1e-09 65.1 96 41.7
Actinidia26497 Actinidia chinensis HOM05D000455 ORTHO05D000434 1.4e-08 63.9 99 40.4
Cc03_g12520 Coffea canephora HOM05D000455 ORTHO05D000434 1.4e-08 63.9 87 40.2
Ciclev10018669m.g Citrus clementina HOM05D000455 ORTHO05D000434 1.8e-08 63.5 97 39.2
arahy.Tifrunner.gnm1.ann1.X9RD42 Arachis hypogaea HOM05D000455 ORTHO05D000434 3.0e-08 62.8 89 39.3
ECA240G2362 Erigeron canadensis HOM05D000455 ORTHO05D000434 4.0e-08 62.4 97 38.1
Sabra07G0120100 Salix brachista HOM05D000455 ORTHO05D018090 4.0e-08 62.4 74 47.3
Sopen11g020820 Solanum pennellii HOM05D000455 ORTHO05D000434 4.0e-08 62.4 105 39.0
FAN28G1048 Fragaria x ananassa HOM05D000455 ORTHO05D000434 5.2e-08 62.0 94 41.5
RcHm_v2.0_Chr2g0121311 Rosa chinensis HOM05D000455 ORTHO05D000434 5.2e-08 62.0 91 39.6
PGSC0003DMG400013140 Solanum tuberosum HOM05D000455 ORTHO05D000434 5.2e-08 62.0 97 40.2
Nn7g37560 Nelumbo nucifera HOM05D000455 ORTHO05D000434 6.8e-08 61.6 81 43.2
Sabra17G0002200 Salix brachista HOM05D000063 ORTHO05D050471 6.8e-08 61.6 85 35.3
Thecc.04G171900 Theobroma cacao HOM05D000455 ORTHO05D000434 6.8e-08 61.6 87 42.5
TPR.G6602 Trifolium pratense HOM05D000455 ORTHO05D000434 6.8e-08 61.6 81 40.7
arahy.Tifrunner.gnm1.ann1.DEK8Z8 Arachis hypogaea HOM05D000455 ORTHO05D000434 8.8e-08 61.2 80 41.2
arahy.Tifrunner.gnm1.ann1.XY5KEE Arachis hypogaea HOM05D000455 ORTHO05D000434 8.8e-08 61.2 88 38.6
FvH4_1g24430 Fragaria vesca HOM05D000455 ORTHO05D000434 8.8e-08 61.2 94 41.5
Gohir.D02G111100 Gossypium hirsutum HOM05D000455 ORTHO05D000434 8.8e-08 61.2 87 41.4
Gorai.011G138700 Gossypium raimondii HOM05D000455 ORTHO05D000434 8.8e-08 61.2 87 40.2
Oeu056128.1 Olea europaea HOM05D000455 ORTHO05D000434 8.8e-08 61.2 101 39.6
Haze_01422 Corylus avellana HOM05D000455 ORTHO05D000434 1.2e-07 60.8 97 39.2
Dinv44164 Davidia involucrata HOM05D000455 ORTHO05D000434 1.2e-07 60.8 97 38.1
FAN26G2659 Fragaria x ananassa HOM05D000455 ORTHO05D000434 1.2e-07 60.8 94 41.5
HanXRQChr03g0089141 Helianthus annuus HOM05D000455 ORTHO05D000434 1.2e-07 60.8 93 39.8
Zm00001eb078590 Zea mays HOM05D000455 ORTHO05D000434 1.2e-07 60.8 91 38.5
arahy.Tifrunner.gnm1.ann1.2T470H Arachis hypogaea HOM05D000455 ORTHO05D000434 1.5e-07 60.5 90 37.8
PGR083G1560 Punica granatum HOM05D000455 ORTHO05D000434 1.5e-07 60.5 97 41.2
arahy.Tifrunner.gnm1.ann1.DJ079B Arachis hypogaea HOM05D000455 ORTHO05D000434 2.0e-07 60.1 102 35.3
arahy.Tifrunner.gnm1.ann1.Y03563 Arachis hypogaea HOM05D000455 ORTHO05D000434 2.0e-07 60.1 102 35.3
Gorai.005G126000 Gossypium raimondii HOM05D000455 ORTHO05D000434 2.0e-07 60.1 87 41.4
arahy.Tifrunner.gnm1.ann1.657RUG Arachis hypogaea HOM05D000455 ORTHO05D000434 2.6e-07 59.7 80 40.0
FAN19G0290 Fragaria x ananassa HOM05D000455 ORTHO05D000434 2.6e-07 59.7 94 40.4
Gohir.D10G125700 Gossypium hirsutum HOM05D000455 ORTHO05D000434 2.6e-07 59.7 87 39.1
SEGI_15492 Sequoiadendron giganteum HOM05D000455 ORTHO05D000434 2.6e-07 59.7 120 35.0
Solyc11g045350.2 Solanum lycopersicum HOM05D000455 ORTHO05D000434 2.6e-07 59.7 105 38.1
Ca_01240_v3 Cicer arietinum L. HOM05D000455 ORTHO05D000434 3.4e-07 59.3 139 30.9
Gohir.A02G092900 Gossypium hirsutum HOM05D000455 ORTHO05D000434 3.4e-07 59.3 87 40.2
Gohir.A10G141200 Gossypium hirsutum HOM05D000455 ORTHO05D000434 3.4e-07 59.3 109 34.9
Hund15454 Selenicereus undatus HOM05D000455 ORTHO05D000434 3.4e-07 59.3 93 38.7
unitig_18.g30049 Utricularia gibba HOM05D000455 ORTHO05D000434 3.4e-07 59.3 106 36.8
unitig_8.g4802 Utricularia gibba HOM05D000455 ORTHO05D000434 3.4e-07 59.3 106 36.8
Sabra17G0014500 Salix brachista HOM05D000455 ORTHO05D018090 4.4e-07 58.9 93 35.5
PGSC0003DMG400005871 Solanum tuberosum HOM05D000455 ORTHO05D000434 4.4e-07 58.9 97 38.1
MSTRG.24580 Avicennia marina HOM05D000455 ORTHO05D000434 5.7e-07 58.5 96 37.5
ClCG07G011670 Citrullus lanatus HOM05D000455 ORTHO05D000434 5.7e-07 58.5 72 45.8
MELO3C017790.2 Cucumis melo HOM05D000455 ORTHO05D000434 5.7e-07 58.5 72 45.8
CsaV3_4G002550 Cucumis sativus L. HOM05D000455 ORTHO05D000434 5.7e-07 58.5 72 45.8
Glyma.15G027900 Glycine max HOM05D000455 ORTHO05D000434 5.7e-07 58.5 79 41.8
Lsat_1_v5_gn_3_111441 Lactuca sativa HOM05D000455 ORTHO05D000434 5.7e-07 58.5 77 42.9
Sopen08g004760 Solanum pennellii HOM05D000455 ORTHO05D000434 5.7e-07 58.5 97 38.1
Eucgr.A00040 Eucalyptus grandis HOM05D000455 ORTHO05D000434 7.5e-07 58.2 84 40.5
Nitab4.5_0001481g0020 Nicotiana tabacum HOM05D000455 ORTHO05D000434 7.5e-07 58.2 97 39.2
Nitab4.5_0002421g0020 Nicotiana tabacum HOM05D000455 ORTHO05D000434 7.5e-07 58.2 97 39.2
Peaxi162Scf00126g00813 Petunia axillaris HOM05D000455 ORTHO05D000434 7.5e-07 58.2 97 39.2
Potri.007G133400 Populus trichocarpa HOM05D000455 ORTHO05D000434 7.5e-07 58.2 96 37.5
Medtr4g068000 Medicago truncatula HOM05D000455 ORTHO05D000434 9.8e-07 57.8 78 42.3
Nitab4.5_0007583g0010 Nicotiana tabacum HOM05D000455 ORTHO05D000434 9.8e-07 57.8 102 36.3
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 9.8e-07 57.8 85 40.0
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 9.8e-07 57.8 85 40.0
Solyc08g013900.3 Solanum lycopersicum HOM05D000455 ORTHO05D000434 9.8e-07 57.8 97 39.2
CAN.G1771.3 Capsicum annuum HOM05D000455 ORTHO05D000434 1.3e-06 57.4 85 42.4
Migut.N03106 Erythranthe guttata HOM05D000455 ORTHO05D000434 1.3e-06 57.4 97 36.1
Glyma.11G125500 Glycine max HOM05D000455 ORTHO05D000434 1.3e-06 57.4 78 41.0
Glyma.13G346300 Glycine max HOM05D000455 ORTHO05D000434 1.3e-06 57.4 79 41.8
Lj3A110T18 Lonicera japonica HOM05D000455 ORTHO05D000434 1.3e-06 57.4 98 37.8
Sed0005440 Sechium edule HOM05D000455 ORTHO05D000434 1.3e-06 57.4 72 44.4
Duzib212G0766 Durio zibethinus HOM05D000455 ORTHO05D000434 1.7e-06 57.0 87 40.2
FAN23G1218 Fragaria x ananassa HOM05D000455 ORTHO05D000434 1.7e-06 57.0 91 38.5
FAN23G2674 Fragaria x ananassa HOM05D000455 ORTHO05D000434 1.7e-06 57.0 91 38.5
HanXRQChr03g0089161 Helianthus annuus HOM05D000455 ORTHO05D000434 1.7e-06 57.0 80 41.2
Lj3g0004718 Lotus japonicus HOM05D000455 ORTHO05D000434 1.7e-06 57.0 80 40.0
Lalb_Chr19g0138421 Lupinus albus HOM05D000455 ORTHO05D000434 1.7e-06 57.0 76 39.5
Nitab4.5_0005382g0010 Nicotiana tabacum HOM05D000455 ORTHO05D000434 1.7e-06 57.0 102 36.3
Prupe.1G200100 Prunus persica HOM05D000455 ORTHO05D000434 1.7e-06 57.0 97 35.1
Zm00001eb425660 Zea mays HOM05D000455 ORTHO05D000434 1.7e-06 57.0 91 35.2
Aqoxy6G00618 Aquilegia oxysepala HOM05D000455 ORTHO05D000434 2.2e-06 56.6 106 33.0
arahy.Tifrunner.gnm1.ann1.1E9R5B Arachis hypogaea HOM05D000455 ORTHO05D000434 2.2e-06 56.6 78 39.7
CAN.G1426.3 Capsicum annuum HOM05D000455 ORTHO05D000434 2.2e-06 56.6 97 37.1
Glyma.12G050100 Glycine max HOM05D000455 ORTHO05D000434 2.2e-06 56.6 78 41.0
MD04G1116200 Malus domestica HOM05D000455 ORTHO05D000434 2.2e-06 56.6 91 34.1
MD12G1131800 Malus domestica HOM05D000455 ORTHO05D000434 2.2e-06 56.6 91 36.3
TWI38G0278 Tripterygium wilfordii HOM05D000455 ORTHO05D000434 2.2e-06 56.6 77 42.9
GSVIVG01038090001 Vitis vinifera HOM05D000455 ORTHO05D000434 2.2e-06 56.6 96 36.5
arahy.Tifrunner.gnm1.ann1.B1BL2B Arachis hypogaea HOM05D000455 ORTHO05D000434 2.8e-06 56.2 89 36.0
Duzib268G0089 Durio zibethinus HOM05D000455 ORTHO05D000434 2.8e-06 56.2 87 40.2
Os04g0495800 Oryza sativa ssp. japonica HOM05D000455 ORTHO05D000434 2.8e-06 56.2 66 40.9
Phvul.005G155100 Phaseolus vulgaris HOM05D000455 ORTHO05D000434 2.8e-06 56.2 69 44.9
SEGI_16704 Sequoiadendron giganteum HOM05D000455 ORTHO05D000434 2.8e-06 56.2 116 34.5
SEGI_28712 Sequoiadendron giganteum HOM05D000455 ORTHO05D000434 2.8e-06 56.2 116 34.5
Atru.chr4.1337_Atru.chr4.1338 Acer truncatum HOM05D000455 ORTHO05D000434 3.7e-06 55.8 85 40.0
ATR0743G048 Amborella trichopoda HOM05D000455 ORTHO05D000434 3.7e-06 55.8 76 44.7
arahy.Tifrunner.gnm1.ann1.EX05TD Arachis hypogaea HOM05D000455 ORTHO05D000434 3.7e-06 55.8 89 37.1
Lj3g0001699 Lotus japonicus HOM05D000455 ORTHO05D000434 3.7e-06 55.8 51 52.9
MBI07_g05961_MAGBIO Magnolia biondii HOM05D000455 ORTHO05D000434 3.7e-06 55.8 91 38.5
Potri.017G018801 Populus trichocarpa HOM05D000455 ORTHO05D050471 3.7e-06 55.8 63 36.5
THA.LOC104803900 Tarenaya hassleriana HOM05D000455 ORTHO05D000434 3.7e-06 55.8 109 33.0
TAR362G0492 Trochodendron aralioides HOM05D000455 ORTHO05D000434 3.7e-06 55.8 91 36.3
Medtr2g099350 Medicago truncatula HOM05D000455 ORTHO05D000434 4.9e-06 55.5 91 36.3
Nn1g09536 Nelumbo nucifera HOM05D000455 ORTHO05D000434 4.9e-06 55.5 92 37.0
Phvul.011G052100 Phaseolus vulgaris HOM05D000455 ORTHO05D000434 4.9e-06 55.5 78 39.7
Sed0012019 Sechium edule HOM05D000455 ORTHO05D000434 4.9e-06 55.5 72 44.4
VMungo1080G0843 Vigna mungo HOM05D000455 ORTHO05D000434 4.9e-06 55.5 81 37.0
Actinidia11290 Actinidia chinensis HOM05D000455 ORTHO05D000434 6.3e-06 55.1 100 37.0
Ca_20806_v3 Cicer arietinum L. HOM05D000455 ORTHO05D000434 6.3e-06 55.1 88 38.6
Psat5g291840 Pisum sativum HOM05D000455 ORTHO05D000434 6.3e-06 55.1 81 38.3
Psat7g208800 Pisum sativum HOM05D000455 ORTHO05D000434 6.3e-06 55.1 78 41.0
Sabra16G0031500 Salix brachista HOM05D002460 ORTHO05D016446 6.3e-06 55.1 38 68.4
EL10Ac6g14107 Beta vulgaris HOM05D000455 ORTHO05D000434 8.3e-06 54.7 99 36.4


User provided reference genes

Program Settings