Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 7.9e-121 437.2 230 100.0
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 1.1e-117 426.8 230 97.4
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 1.6e-110 402.9 220 95.9
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 3.7e-102 375.2 230 83.0
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 3.4e-100 368.6 230 83.0
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 4.5e-100 368.2 230 82.2
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 1.0e-99 367.1 230 83.0
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 8.5e-99 364.0 230 81.3
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 1.1e-98 363.6 230 79.1
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 4.7e-97 358.2 230 78.3
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 6.1e-97 357.8 230 78.7
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 1.0e-96 357.1 230 77.8
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.4e-96 356.7 230 77.8
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 6.7e-96 354.4 230 77.8
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 2.6e-95 352.4 230 77.0
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 1.7e-94 349.7 230 77.4
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 2.2e-94 349.4 230 75.2
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 2.8e-94 349.0 230 77.4
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 4.8e-94 348.2 230 77.4
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 4.1e-93 345.1 230 76.1
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 4.1e-93 345.1 230 77.0
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 7.0e-93 344.4 230 74.8
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 1.2e-92 343.6 230 74.3
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 1.5e-92 343.2 230 75.7
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 2.0e-92 342.8 230 76.1
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 2.6e-92 342.4 230 74.8
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 4.5e-92 341.7 230 74.8
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 4.5e-92 341.7 230 75.2
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 1.0e-91 340.5 230 76.1
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 1.0e-91 340.5 230 75.2
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.3e-91 340.1 230 75.2
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 1.7e-91 339.7 229 77.3
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 2.2e-91 339.3 230 73.9
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 2.9e-91 339.0 230 74.8
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 3.8e-91 338.6 230 74.8
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 3.8e-91 338.6 230 74.8
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 6.5e-91 337.8 230 73.9
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 6.5e-91 337.8 230 77.0
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 8.5e-91 337.4 230 75.2
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 1.4e-90 336.7 230 74.3
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 1.9e-90 336.3 232 75.0
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 1.9e-90 336.3 230 74.8
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 1.9e-90 336.3 230 72.6
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 2.5e-90 335.9 230 72.2
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 4.2e-90 335.1 230 73.9
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 5.5e-90 334.7 230 73.5
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 7.2e-90 334.3 232 74.6
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.2e-89 333.6 230 73.5
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 1.6e-89 333.2 239 72.0
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.1e-89 332.8 230 73.0
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 3.6e-89 332.0 230 72.2
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 1.0e-88 330.5 230 72.6
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 1.8e-88 329.7 232 73.3
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.3e-88 329.3 230 73.9
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 3.0e-88 328.9 230 73.9
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 3.9e-88 328.6 230 74.3
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 5.2e-88 328.2 230 72.6
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.5e-87 326.6 230 73.0
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 1.5e-87 326.6 250 70.4
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 2.0e-87 326.2 230 74.3
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 7.4e-87 324.3 230 71.3
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 7.4e-87 324.3 230 73.0
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.3e-86 323.6 230 72.2
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 2.8e-86 322.4 231 72.3
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 4.8e-86 321.6 230 71.7
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 1.8e-85 319.7 232 72.4
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 1.8e-85 319.7 230 70.9
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 2.4e-85 319.3 230 71.3
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 3.1e-85 318.9 230 70.4
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 4.1e-85 318.5 230 71.3
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 5.3e-85 318.2 230 70.9
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 1.2e-84 317.0 230 70.0
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 1.6e-84 316.6 230 69.1
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 2.0e-84 316.2 232 72.0
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 3.5e-84 315.5 252 66.3
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 7.7e-84 314.3 232 69.4
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.3e-83 313.5 230 70.9
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 5.0e-83 311.6 254 65.0
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 3.2e-82 308.9 263 62.7
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 7.2e-82 307.8 230 67.0
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 1.2e-81 307.0 230 67.0
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 2.7e-81 305.8 230 66.1
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 3.6e-81 305.4 230 66.1
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 3.6e-81 305.4 230 66.5
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 3.6e-81 305.4 230 67.0
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 3.6e-81 305.4 230 67.0
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 3.6e-81 305.4 230 67.8
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 6.1e-81 304.7 230 69.6
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 1.4e-80 303.5 230 65.7
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 1.4e-80 303.5 230 66.1
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 1.4e-80 303.5 230 66.5
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 1.8e-80 303.1 231 69.7
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 2.3e-80 302.8 231 68.0
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 3.0e-80 302.4 230 66.5
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 4.0e-80 302.0 230 65.7
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 8.8e-80 300.8 220 69.1
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 1.5e-79 300.1 230 65.2
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 2.6e-79 299.3 230 66.1
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 1.7e-78 296.6 307 56.0
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 4.8e-78 295.0 230 63.9
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 1.0e-75 287.3 230 63.0
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 2.5e-74 282.7 236 62.7
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.2e-73 280.4 220 64.1
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 1.2e-73 280.4 361 48.2
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 5.7e-71 271.6 214 65.4
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 2.8e-70 269.2 318 50.3
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 2.0e-68 263.1 199 65.8
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 4.5e-68 261.9 230 60.9
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 4.5e-68 261.9 181 74.6
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 1.0e-64 250.8 230 55.2
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 3.4e-63 245.7 166 74.7
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 2.2e-62 243.0 179 70.9
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 1.8e-61 240.0 231 58.0
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 1.0e-59 234.2 164 72.0
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 5.0e-59 231.9 164 70.7
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 9.5e-58 227.6 229 56.3
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 9.5e-58 227.6 230 54.3
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.3e-56 223.0 164 68.9
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 5.2e-56 221.9 141 78.7
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 6.4e-54 214.9 283 47.7
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 8.3e-54 214.5 140 75.7
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 6.0e-52 208.4 151 69.5
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 1.3e-51 207.2 234 51.3
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.9e-50 203.4 138 71.7
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 2.9e-46 189.5 241 47.3
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 2.4e-45 186.4 117 80.3
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 9.2e-45 184.5 176 55.7
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 5.6e-42 175.3 245 44.5
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 7.3e-42 174.9 111 76.6
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 6.2e-41 171.8 139 64.0
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 1.4e-40 170.6 266 42.1
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 2.3e-40 169.9 139 61.2
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 2.6e-39 166.4 291 38.1
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 8.3e-38 161.4 158 55.1
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 4.1e-37 159.1 137 61.3
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 7.1e-37 158.3 218 46.3
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 2.8e-33 146.4 90 80.0
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 2.4e-29 133.3 123 61.0
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 1.8e-24 117.1 111 55.9
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 4.4e-23 112.5 102 58.8
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 2.4e-21 106.7 71 69.0
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 7.1e-21 105.1 79 64.6
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 3.0e-19 99.8 67 74.6
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 5.1e-19 99.0 106 54.7
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 2.8e-17 93.2 80 62.5
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.8e-16 90.5 182 35.2
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 1.5e-15 87.4 63 65.1
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 7.6e-15 85.1 137 38.7
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 9.9e-15 84.7 58 70.7
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.3e-14 84.3 65 63.1
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.3e-14 84.3 54 79.6
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 2.9e-14 83.2 73 57.5
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 2.1e-09 67.0 89 41.6
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 2.4e-08 63.5 69 44.9
MD03G1213700 Malus domestica HOM05D004531 ORTHO05D005484 9.0e-08 61.6 45 71.1
PSO210G7246 Papaver somniferum HOM05D000014 ORTHO05D000016 1.2e-07 61.2 40 75.0
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 3.4e-07 59.7 38 68.4
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 1.7e-06 57.4 41 63.4


User provided reference genes

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