Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.6e-288 995.3 485 100.0
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 6.5e-258 893.6 485 91.3
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.2e-249 864.4 486 88.3
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 4.4e-238 827.8 473 85.6
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 6.5e-226 787.3 473 82.5
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 7.0e-212 740.7 479 78.3
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 5.0e-210 734.6 497 75.7
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 8.6e-210 733.8 487 75.2
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 8.6e-210 733.8 481 76.9
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 1.1e-209 733.4 481 76.5
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 3.6e-208 728.4 478 74.9
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 8.0e-208 727.2 478 75.3
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 1.8e-207 726.1 478 75.1
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 1.8e-207 726.1 486 74.5
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 6.8e-207 724.2 492 75.0
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 9.8e-206 720.3 492 73.4
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 1.9e-204 716.1 484 74.0
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 2.4e-204 715.7 488 73.0
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 3.2e-204 715.3 483 73.7
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 4.6e-203 711.4 483 74.1
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 1.0e-202 710.3 473 75.7
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 1.3e-202 709.9 483 74.1
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 3.9e-202 708.4 483 73.3
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 4.3e-201 704.9 480 73.8
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 5.6e-201 704.5 499 72.3
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 1.1e-199 700.3 480 73.5
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 3.1e-199 698.7 481 74.2
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 2.0e-198 696.0 483 72.9
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 3.4e-198 695.3 482 72.4
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 4.4e-198 694.9 479 74.7
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 1.3e-197 693.3 491 72.1
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 1.7e-197 693.0 490 72.7
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 6.4e-197 691.0 479 72.9
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 8.3e-197 690.6 485 72.0
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 3.5e-195 685.3 476 72.7
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 4.6e-195 684.9 475 71.6
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 1.0e-194 683.7 496 71.8
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 1.2e-192 676.8 479 71.0
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 4.0e-191 671.8 479 69.1
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 1.5e-190 669.8 478 70.3
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.9e-189 665.6 487 71.7
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 4.9e-189 664.8 466 73.6
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 4.9e-189 664.8 496 69.6
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 6.0e-187 657.9 467 73.0
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 1.3e-186 656.8 527 66.2
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 3.0e-186 655.6 479 69.9
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 5.1e-186 654.8 477 69.2
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 1.9e-185 652.9 485 69.3
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 3.3e-185 652.1 466 69.5
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 4.3e-185 651.7 479 67.6
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 1.2e-184 650.2 479 68.7
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 1.2e-184 650.2 479 68.7
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 1.6e-184 649.8 484 69.6
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.4e-183 646.7 476 67.6
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 1.4e-183 646.7 479 67.6
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 1.4e-183 646.7 490 67.6
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 1.8e-183 646.4 476 68.1
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 3.1e-183 645.6 474 70.3
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 9.0e-183 644.0 462 71.4
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 2.6e-182 642.5 488 68.9
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 4.4e-182 641.7 478 68.4
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 3.2e-180 635.6 463 68.9
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 5.4e-180 634.8 498 66.1
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 7.8e-179 630.9 462 69.5
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 2.3e-178 629.4 473 66.4
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 5.1e-178 628.2 530 61.3
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.1e-177 627.1 447 72.3
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 3.3e-177 625.5 477 67.9
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 9.6e-177 624.0 469 69.5
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 4.8e-176 621.7 463 68.5
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 1.4e-175 620.2 468 68.4
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 4.0e-175 618.6 489 66.9
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 9.0e-175 617.5 466 67.2
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 3.8e-173 612.1 491 64.4
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 4.3e-169 598.6 472 67.2
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 1.8e-167 593.2 469 65.9
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 2.0e-166 589.7 471 64.5
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 3.4e-166 589.0 478 64.6
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 2.2e-165 586.3 478 65.7
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.0e-162 577.4 479 64.1
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 2.3e-162 576.2 474 63.3
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 5.1e-162 575.1 474 62.7
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 6.7e-162 574.7 492 60.6
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 6.7e-162 574.7 500 65.0
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.6e-160 570.1 404 71.0
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 2.1e-160 569.7 484 62.2
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 2.5e-156 556.2 461 62.9
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 4.2e-156 555.4 494 61.9
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 1.2e-155 553.9 459 63.4
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 1.2e-155 553.9 474 62.7
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 1.8e-154 550.1 557 54.8
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 7.4e-153 544.7 373 72.9
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 6.3e-152 541.6 487 60.4
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 6.5e-149 531.6 517 56.9
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.2e-147 527.3 472 62.9
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 6.1e-147 525.0 399 66.7
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.8e-143 513.5 506 54.7
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 1.2e-142 510.8 477 57.0
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 4.5e-142 508.8 466 59.0
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 2.2e-141 506.5 389 68.6
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 1.1e-140 504.2 278 84.5
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 1.4e-140 503.8 848 39.4
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 1.9e-140 503.4 383 67.1
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.5e-137 493.8 455 59.1
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 4.8e-136 488.8 412 63.1
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 8.5e-133 478.0 470 53.8
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 4.2e-132 475.7 449 58.1
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 2.7e-131 473.0 551 48.6
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 3.3e-129 466.1 514 51.0
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 2.1e-123 446.8 268 79.1
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 1.2e-115 421.0 343 64.1
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 3.0e-114 416.4 381 61.2
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-99 367.5 633 39.3
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.8e-98 364.0 429 52.9
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 5.0e-93 345.9 226 70.8
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 1.3e-85 321.2 343 52.5
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 4.1e-79 299.7 476 38.7
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.0e-77 295.0 193 71.5
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 3.6e-75 286.6 462 37.2
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 1.2e-65 255.0 281 45.6
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 2.9e-64 250.4 139 84.9
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 2.3e-61 240.7 129 87.6
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 9.6e-60 235.3 393 41.7
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 1.5e-57 228.0 335 39.7
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 3.0e-53 213.8 288 41.0
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 3.7e-51 206.8 113 82.3
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 3.9e-45 186.8 109 79.8
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 1.1e-34 152.1 87 82.8
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 3.8e-24 117.1 76 75.0
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 4.7e-22 110.2 60 81.7
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 1.5e-20 105.1 81 63.0
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 2.6e-17 94.4 66 62.1
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 6.5e-16 89.7 53 83.0
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 1.0e-13 82.4 41 87.8
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 6.7e-13 79.7 69 58.0
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 1.6e-09 68.6 45 71.1
QL04p060164 Quercus lobata HOM05D005440 ORTHO05D007314 2.6e-09 67.8 118 39.8
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 1.3e-08 65.5 49 65.3
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 2.9e-08 64.3 94 42.6
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 1.1e-07 62.4 72 50.0


User provided reference genes

Program Settings