Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G015600 Populus trichocarpa HOM05D008343 ORTHO05D009841 3.8e-48 194.5 98 100.0
Potri.007G049500 Populus trichocarpa HOM05D008343 ORTHO05D009841 7.9e-38 160.2 99 84.8
Potri.005G142900 Populus trichocarpa HOM05D008343 ORTHO05D009841 4.7e-30 134.4 98 74.5
Potri.006G008066 Populus trichocarpa HOM05D008343 ORTHO05D009841 2.2e-24 115.5 81 79.0
Sabra06G0006300 Salix brachista HOM05D008343 ORTHO05D009841 9.4e-23 110.2 75 81.3
Lalb_Chr05g0226171 Lupinus albus HOM05D008343 ORTHO05D009841 6.1e-14 80.9 83 54.2
Lj4g0017585 Lotus japonicus HOM05D008343 ORTHO05D009841 3.4e-12 75.1 86 53.5
Nn1g04695 Nelumbo nucifera HOM05D008343 ORTHO05D009841 9.8e-12 73.6 80 52.5
Eucgr.H02233 Eucalyptus grandis HOM05D008343 ORTHO05D009841 4.8e-11 71.2 100 44.0
Lalb_Chr16g0388911 Lupinus albus HOM05D008343 ORTHO05D009841 4.8e-11 71.2 85 50.6
Eucgr.H02236 Eucalyptus grandis HOM05D008343 ORTHO05D009841 1.1e-10 70.1 100 45.0
Glyma.17G166600 Glycine max HOM05D008343 ORTHO05D009841 2.4e-10 68.9 74 48.6
CiPaw.02G005800 Carya illinoinensis HOM05D008343 ORTHO05D009841 4.1e-10 68.2 74 51.4
Dinv30037 Davidia involucrata HOM05D008343 ORTHO05D009841 4.1e-10 68.2 74 52.7
QL06p040048 Quercus lobata HOM05D008343 ORTHO05D009841 7.0e-10 67.4 93 44.1
GSVIVG01032935001 Vitis vinifera HOM05D000114 ORTHO05D000075 7.0e-10 67.4 96 46.9
CSS0015714 Camellia sinensis var. sinensis HOM05D008343 ORTHO05D009841 9.1e-10 67.0 71 52.1
Prupe.6G228500 Prunus persica HOM05D008343 ORTHO05D009841 9.1e-10 67.0 68 58.8
MD15G1289400 Malus domestica HOM05D014781 ORTHO05D009841 1.6e-09 66.2 70 51.4
MELO3C007588.2 Cucumis melo HOM05D024155 ORTHO05D010780 2.0e-09 65.9 101 45.5
Lj4g0018363 Lotus japonicus HOM05D008343 ORTHO05D009841 2.7e-09 65.5 78 50.0
Potri.007G049400 Populus trichocarpa HOM05D008343 ORTHO05D009841 3.5e-09 65.1 84 50.0
TAR376G0584 Trochodendron aralioides HOM05D008343 ORTHO05D009841 3.5e-09 65.1 75 52.0
Manes.13G118000 Manihot esculenta HOM05D008343 ORTHO05D009841 4.5e-09 64.7 65 55.4
Thecc.01G063900 Theobroma cacao HOM05D018273 ORTHO05D009841 5.9e-09 64.3 81 45.7
Dinv26871 Davidia involucrata HOM05D008343 ORTHO05D009841 1.0e-08 63.5 74 47.3
MD02G1179300 Malus domestica HOM05D008343 ORTHO05D009841 1.0e-08 63.5 70 51.4
Glyma.05G099300 Glycine max HOM05D008343 ORTHO05D009841 1.3e-08 63.2 75 48.0
QL06p040052 Quercus lobata HOM05D008343 ORTHO05D009841 1.3e-08 63.2 68 54.4
FAN28G1184 Fragaria x ananassa HOM05D014781 ORTHO05D009841 1.7e-08 62.8 71 50.7
FAN28G2323 Fragaria x ananassa HOM05D014781 ORTHO05D009841 1.7e-08 62.8 71 50.7
FvH4_1g16830 Fragaria vesca HOM05D014781 ORTHO05D009841 2.2e-08 62.4 71 50.7
FAN19G0512 Fragaria x ananassa HOM05D014781 ORTHO05D009841 2.2e-08 62.4 71 50.7
FAN26G0261 Fragaria x ananassa HOM05D014781 ORTHO05D009841 2.2e-08 62.4 71 50.7
GSVIVG01000214001 Vitis vinifera HOM05D008343 ORTHO05D009841 2.2e-08 62.4 73 46.6
Gohir.A10G090600 Gossypium hirsutum HOM05D018273 ORTHO05D011351 3.8e-08 61.6 88 47.7
CSS0026698 Camellia sinensis var. sinensis HOM05D008343 ORTHO05D009841 6.5e-08 60.8 86 43.0
Dinv30038 Davidia involucrata HOM05D008343 ORTHO05D009841 6.5e-08 60.8 67 55.2
Ciclev10027017m.g Citrus clementina HOM05D008343 ORTHO05D009841 1.9e-07 59.3 79 46.8
Gorai.011G106800 Gossypium raimondii HOM05D018273 ORTHO05D011351 1.9e-07 59.3 88 46.6
CiPaw.01G012500 Carya illinoinensis HOM05D008343 ORTHO05D009841 2.5e-07 58.9 69 52.2
Eucgr.H01293 Eucalyptus grandis HOM05D008343 ORTHO05D009841 3.2e-07 58.5 81 43.2
Prupe.3G151900 Prunus persica HOM05D008343 ORTHO05D009841 4.2e-07 58.2 58 56.9
Peaxi162Scf00365g00056 Petunia axillaris HOM05D011430 ORTHO05D009841 7.2e-07 57.4 66 50.0
CiPaw.15G050500 Carya illinoinensis HOM05D022916 ORTHO05D011351 9.4e-07 57.0 88 46.6
Eucgr.H01292 Eucalyptus grandis HOM05D008343 ORTHO05D009841 9.4e-07 57.0 75 44.0
Eucgr.H02240 Eucalyptus grandis HOM05D008343 ORTHO05D009841 9.4e-07 57.0 75 44.0
Eucgr.H02234 Eucalyptus grandis HOM05D008343 ORTHO05D009841 1.2e-06 56.6 75 44.0
Eucgr.H02237 Eucalyptus grandis HOM05D008343 ORTHO05D009841 1.2e-06 56.6 75 44.0
Haze_15346 Corylus avellana HOM05D008343 ORTHO05D009841 1.6e-06 56.2 60 55.0
TAR376G0451 Trochodendron aralioides HOM05D008343 ORTHO05D009841 1.6e-06 56.2 59 52.5
Eucgr.H02229 Eucalyptus grandis HOM05D008343 ORTHO05D009841 2.1e-06 55.8 75 44.0
Gohir.D10G097300 Gossypium hirsutum HOM05D018273 ORTHO05D011351 2.1e-06 55.8 86 46.5
Cfa004065 Carpinus fangiana HOM05D008343 ORTHO05D009841 3.6e-06 55.1 60 55.0
Cpa.g.sc6.93 Carica papaya HOM05D008343 ORTHO05D009841 4.7e-06 54.7 68 44.1
QL02p003446 Quercus lobata HOM05D022916 ORTHO05D011351 4.7e-06 54.7 88 45.5
RcHm_v2.0_Chr2g0106731 Rosa chinensis HOM05D014781 ORTHO05D009841 4.7e-06 54.7 69 47.8
TAR376G1160 Trochodendron aralioides HOM05D008343 ORTHO05D009841 4.7e-06 54.7 47 59.6
Eucgr.H02228 Eucalyptus grandis HOM05D008343 ORTHO05D009841 6.1e-06 54.3 86 44.2
Gohir.A06G022150 Gossypium hirsutum HOM05D016877 ORTHO05D011351 6.1e-06 54.3 67 47.8
Cfa018042 Carpinus fangiana HOM05D022916 ORTHO05D011351 8.0e-06 53.9 79 44.3


User provided reference genes

Program Settings