Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 2.1e-135 485.7 247 100.0
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 3.1e-131 471.9 247 96.0
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 7.1e-128 460.7 247 93.5
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 3.5e-127 458.4 246 92.3
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 7.9e-127 457.2 247 92.7
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 1.0e-126 456.8 245 93.1
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 8.7e-126 453.8 247 91.1
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 8.7e-126 453.8 247 91.1
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 8.7e-126 453.8 247 91.5
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 1.1e-125 453.4 247 91.5
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 1.5e-125 453.0 247 91.1
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 1.5e-125 453.0 247 91.5
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 1.5e-125 453.0 247 91.1
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 3.3e-125 451.8 247 91.1
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 3.3e-125 451.8 247 92.3
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 3.3e-125 451.8 247 92.3
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 4.3e-125 451.4 247 91.9
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 7.4e-125 450.7 245 91.8
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 7.4e-125 450.7 247 91.9
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 7.4e-125 450.7 247 90.7
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 7.4e-125 450.7 247 90.3
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 7.4e-125 450.7 245 91.8
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 7.4e-125 450.7 247 90.3
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 9.7e-125 450.3 247 91.5
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 9.7e-125 450.3 247 91.5
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 9.7e-125 450.3 245 90.2
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 1.3e-124 449.9 245 92.2
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 1.6e-124 449.5 245 91.8
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 1.6e-124 449.5 247 90.7
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 1.6e-124 449.5 245 91.8
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 2.2e-124 449.1 247 90.3
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 2.8e-124 448.7 245 91.4
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 2.8e-124 448.7 247 89.9
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 2.8e-124 448.7 247 90.3
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 2.8e-124 448.7 247 89.9
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 2.8e-124 448.7 247 89.9
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 2.8e-124 448.7 247 89.9
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 2.8e-124 448.7 247 89.1
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 2.8e-124 448.7 246 89.8
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 3.7e-124 448.4 246 90.2
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 6.3e-124 447.6 247 90.3
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 6.3e-124 447.6 247 90.7
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 6.3e-124 447.6 247 90.3
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 6.3e-124 447.6 247 90.7
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 6.3e-124 447.6 247 90.3
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 6.3e-124 447.6 247 89.9
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 6.3e-124 447.6 245 91.0
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 8.2e-124 447.2 247 91.1
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 8.2e-124 447.2 247 90.3
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 1.1e-123 446.8 247 89.5
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 1.1e-123 446.8 247 90.7
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.1e-123 446.8 247 90.3
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.1e-123 446.8 247 90.3
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 1.4e-123 446.4 247 90.3
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 1.4e-123 446.4 247 90.3
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 1.4e-123 446.4 245 91.0
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.4e-123 446.4 245 91.0
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 1.8e-123 446.0 247 90.3
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 1.8e-123 446.0 248 89.9
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 2.4e-123 445.7 247 91.1
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 2.4e-123 445.7 245 89.8
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 3.1e-123 445.3 247 89.5
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 3.1e-123 445.3 247 89.9
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 3.1e-123 445.3 247 89.9
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 3.1e-123 445.3 247 89.9
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 5.3e-123 444.5 246 91.1
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 5.3e-123 444.5 246 91.1
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 5.3e-123 444.5 247 89.5
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 5.3e-123 444.5 243 90.9
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 5.3e-123 444.5 245 90.6
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 5.3e-123 444.5 247 89.9
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 6.9e-123 444.1 245 89.0
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 6.9e-123 444.1 247 89.1
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 6.9e-123 444.1 247 88.3
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 9.0e-123 443.7 247 89.1
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 1.2e-122 443.4 247 89.1
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 1.2e-122 443.4 245 90.6
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 1.5e-122 443.0 245 91.0
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 1.5e-122 443.0 246 87.8
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 1.5e-122 443.0 245 90.6
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 2.0e-122 442.6 243 90.9
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 3.4e-122 441.8 247 88.3
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 3.4e-122 441.8 247 88.7
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 3.4e-122 441.8 248 89.9
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 3.4e-122 441.8 247 89.5
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 3.4e-122 441.8 248 88.7
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 3.4e-122 441.8 248 88.7
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 4.5e-122 441.4 245 88.2
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 89.1
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 7.7e-122 440.7 246 87.4
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 7.7e-122 440.7 247 87.4
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.0e-121 440.3 250 89.2
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 1.0e-121 440.3 248 88.7
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.3e-121 439.9 248 89.5
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 1.3e-121 439.9 247 88.3
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 1.7e-121 439.5 248 88.7
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 1.7e-121 439.5 244 88.9
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 2.2e-121 439.1 247 88.7
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 2.2e-121 439.1 247 88.3
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 2.2e-121 439.1 245 88.6
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 2.2e-121 439.1 245 89.0
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 2.2e-121 439.1 244 89.8
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 2.2e-121 439.1 248 88.3
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 2.9e-121 438.7 247 88.3
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 2.9e-121 438.7 247 87.9
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 3.8e-121 438.3 247 87.9
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 3.8e-121 438.3 247 87.9
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 5.0e-121 438.0 247 87.9
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 5.0e-121 438.0 244 88.5
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 6.5e-121 437.6 244 88.5
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 1.1e-120 436.8 248 88.7
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 2.5e-120 435.6 270 83.3
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 4.2e-120 434.9 247 86.6
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 2.1e-119 432.6 247 86.2
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 3.6e-119 431.8 235 91.9
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 4.6e-119 431.4 334 71.0
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 6.1e-119 431.0 248 87.1
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 7.9e-119 430.6 248 88.3
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 1.8e-118 429.5 286 78.7
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 6.7e-118 427.6 380 64.2
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 8.8e-118 427.2 290 77.2
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 4.3e-117 424.9 248 86.7
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 1.3e-116 423.3 248 86.3
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 1.3e-116 423.3 261 83.1
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 2.2e-116 422.5 248 85.1
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 3.7e-116 421.8 248 85.9
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 1.1e-115 420.2 306 73.5
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 2.6e-114 415.6 247 85.0
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 1.8e-110 402.9 249 81.5
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 6.7e-110 401.0 251 79.7
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 1.5e-109 399.8 253 78.3
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 2.0e-109 399.4 245 80.8
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 2.0e-109 399.4 251 78.9
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 7.0e-107 391.0 249 78.3
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 9.1e-107 390.6 251 76.5
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.3e-105 386.7 211 90.0
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.3e-105 386.7 211 90.0
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 7.2e-104 380.9 266 75.6
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 1.4e-102 376.7 213 88.3
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 4.4e-101 371.7 360 58.6
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 1.1e-91 340.5 245 72.2
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 8.5e-89 330.9 198 86.9
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 4.2e-88 328.6 247 72.5
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 6.8e-86 321.2 245 70.2
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 3.3e-80 302.4 168 88.7
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 4.2e-80 302.0 172 88.4
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 4.2e-80 302.0 179 84.9
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.6e-79 300.1 165 89.7
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 2.1e-79 299.7 172 87.8
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 1.1e-72 277.3 280 56.4
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 6.8e-62 241.5 242 50.0
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 2.1e-58 229.9 138 82.6
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 1.5e-48 197.2 232 44.4
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 3.3e-48 196.1 247 51.4
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 6.8e-46 188.3 247 43.7
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 4.9e-44 182.2 102 87.3
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 1.3e-41 174.1 97 87.6
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 4.3e-40 169.1 208 51.9
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 3.8e-36 156.0 165 55.8
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 4.3e-32 142.5 139 57.6
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 9.9e-29 131.3 84 77.4
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 2.2e-28 130.2 82 78.0
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.9e-27 127.1 85 77.6
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 9.3e-27 124.8 82 80.5
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 2.3e-25 120.2 232 36.6
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 3.9e-25 119.4 215 42.3
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 4.9e-20 102.4 100 49.0
Migut.L00276 Erythranthe guttata HOM05D003856 ORTHO05D004547 8.7e-17 91.7 51 84.3
Hund21152 Selenicereus undatus HOM05D003856 ORTHO05D004547 1.1e-16 91.3 47 87.2
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 9.6e-16 88.2 53 84.9
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 2.1e-15 87.0 74 67.6
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 4.1e-14 82.8 51 82.4
Dinv13969 Davidia involucrata HOM05D003856 ORTHO05D004547 2.6e-13 80.1 79 60.8
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 1.0e-12 78.2 52 80.8
vmacro16921 Vaccinium macrocarpon HOM05D000007 ORTHO05D013648 7.2e-11 72.0 105 46.7
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 9.3e-11 71.6 38 86.8
Rhsim07G0218800 Rhododendron simsii HOM05D003856 ORTHO05D013648 2.1e-10 70.5 90 52.2
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.1e-08 64.7 45 75.6
A05p11440 Brassica napus HOM05D003856 ORTHO05D004547 1.6e-07 60.8 36 77.8
BraA05t20093Z Brassica rapa HOM05D003856 ORTHO05D004547 1.6e-07 60.8 36 77.8
Rhsim07G0218900 Rhododendron simsii HOM05D003856 ORTHO05D013648 2.8e-07 60.1 90 50.0
C04p14930 Brassica napus HOM05D003856 ORTHO05D004547 4.8e-07 59.3 36 75.0
vmacro22601 Vaccinium macrocarpon HOM05D003856 ORTHO05D426869 5.3e-06 55.8 87 47.1


User provided reference genes

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