Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G009600 Populus trichocarpa HOM05D005994 ORTHO05D007322 3.5e-55 218.0 106 100.0
Potri.006G016300 Populus trichocarpa HOM05D005994 ORTHO05D007322 2.6e-50 201.8 106 93.4
Thecc.06G236600 Theobroma cacao HOM05D005994 ORTHO05D007322 1.8e-48 195.7 106 90.6
Sabra06G0011700 Salix brachista HOM05D005994 ORTHO05D007322 4.1e-48 194.5 101 93.1
Duzib235G0800 Durio zibethinus HOM05D005994 ORTHO05D007322 1.6e-47 192.6 106 86.8
Duzib192G0253 Durio zibethinus HOM05D005994 ORTHO05D007322 7.7e-47 190.3 106 86.8
Gohir.D06G216900 Gossypium hirsutum HOM05D005994 ORTHO05D007322 1.0e-46 189.9 106 87.7
COL.COLO4_07784 Corchorus olitorius HOM05D005994 ORTHO05D007322 2.2e-46 188.7 106 86.8
Manes.09G081660 Manihot esculenta HOM05D005994 ORTHO05D007322 2.2e-46 188.7 106 85.8
Gohir.A06G204600 Gossypium hirsutum HOM05D005994 ORTHO05D007322 2.9e-46 188.3 106 86.8
Gorai.010G249300 Gossypium raimondii HOM05D005994 ORTHO05D007322 2.9e-46 188.3 106 86.8
Sed0000308 Sechium edule HOM05D005994 ORTHO05D007322 4.2e-45 184.5 100 87.0
HanXRQChr08g0213481 Helianthus annuus HOM05D005994 ORTHO05D007322 5.5e-45 184.1 100 87.0
ClCG01G010630 Citrullus lanatus HOM05D005994 ORTHO05D007322 1.2e-44 183.0 100 87.0
TWI63G1647 Tripterygium wilfordii HOM05D005994 ORTHO05D007322 1.2e-44 183.0 104 86.5
MELO3C025540.2 Cucumis melo HOM05D005994 ORTHO05D007322 2.8e-44 181.8 100 86.0
EL10Ac4g07614 Beta vulgaris HOM05D005994 ORTHO05D007322 6.1e-44 180.6 101 84.2
Sabra16G0013400 Salix brachista HOM05D005994 ORTHO05D007322 6.1e-44 180.6 103 84.5
Sed0000190 Sechium edule HOM05D005994 ORTHO05D007322 6.1e-44 180.6 100 85.0
CANSAT56G3985 Cannabis sativa HOM05D005994 ORTHO05D007322 8.0e-44 180.3 100 86.0
Glyma.09G011900 Glycine max HOM05D005994 ORTHO05D007322 8.0e-44 180.3 101 84.2
Glyma.15G116500 Glycine max HOM05D005994 ORTHO05D007322 8.0e-44 180.3 101 84.2
MSTRG.14470 Avicennia marina HOM05D005994 ORTHO05D007322 1.0e-43 179.9 100 86.0
arahy.Tifrunner.gnm1.ann1.CR688Y Arachis hypogaea HOM05D005994 ORTHO05D007322 1.4e-43 179.5 101 85.1
arahy.Tifrunner.gnm1.ann1.R43TP7 Arachis hypogaea HOM05D005994 ORTHO05D007322 1.4e-43 179.5 101 85.1
Nitab4.5_0000163g0320 Nicotiana tabacum HOM05D005994 ORTHO05D007322 1.4e-43 179.5 101 84.2
CSS0045306 Camellia sinensis var. sinensis HOM05D005994 ORTHO05D007322 1.8e-43 179.1 100 86.0
Ah.06g181210 Amaranthus hybridus HOM05D005994 ORTHO05D007322 2.3e-43 178.7 101 84.2
Hund23128 Selenicereus undatus HOM05D005994 ORTHO05D007322 2.3e-43 178.7 101 84.2
vmacro11561 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 2.3e-43 178.7 100 86.0
Aqoxy4G02214 Aquilegia oxysepala HOM05D005994 ORTHO05D007322 3.0e-43 178.3 103 82.5
AL7G38530 Arabidopsis lyrata HOM05D005994 ORTHO05D007322 3.0e-43 178.3 101 83.2
Carub.0007s2505 Capsella rubella HOM05D005994 ORTHO05D007322 3.0e-43 178.3 101 83.2
Cc05_g14690 Coffea canephora HOM05D005994 ORTHO05D007322 3.0e-43 178.3 100 85.0
Rhsim06G0226700 Rhododendron simsii HOM05D005994 ORTHO05D007322 3.0e-43 178.3 100 86.0
Sc03g0008000 Simmondsia chinensis HOM05D005994 ORTHO05D007322 3.0e-43 178.3 100 85.0
unitig_747.g21642 Utricularia gibba HOM05D005994 ORTHO05D007322 3.0e-43 178.3 101 84.2
Aa31LG2G12530 Aethionema arabicum HOM05D005994 ORTHO05D007322 4.0e-43 177.9 101 83.2
ECA246G1213 Erigeron canadensis HOM05D005994 ORTHO05D007322 4.0e-43 177.9 100 84.0
Thhalv10026636m.g Eutrema salsugineum HOM05D005994 ORTHO05D007322 4.0e-43 177.9 102 83.3
Lj6g0002817 Lotus japonicus HOM05D005994 ORTHO05D007322 4.0e-43 177.9 101 83.2
Oeu005968.1 Olea europaea HOM05D005994 ORTHO05D007322 4.0e-43 177.9 103 81.6
Sopen07g033490 Solanum pennellii HOM05D005994 ORTHO05D007322 4.0e-43 177.9 97 87.6
Nitab4.5_0001750g0060 Nicotiana tabacum HOM05D005994 ORTHO05D007322 5.2e-43 177.6 100 84.0
Peaxi162Scf00955g00216 Petunia axillaris HOM05D005994 ORTHO05D007322 5.2e-43 177.6 100 83.0
Actinidia05033 Actinidia chinensis HOM05D005994 ORTHO05D007322 6.8e-43 177.2 100 84.0
BcaNung00192 Brassica carinata HOM05D005994 ORTHO05D007322 6.8e-43 177.2 101 84.2
A01p21090 Brassica napus HOM05D005994 ORTHO05D007322 6.8e-43 177.2 101 84.2
C01p26360 Brassica napus HOM05D005994 ORTHO05D007322 6.8e-43 177.2 101 84.2
MSTRG.13010 Avicennia marina HOM05D005994 ORTHO05D007322 8.8e-43 176.8 100 83.0
AUR62017059 Chenopodium quinoa HOM05D005994 ORTHO05D007322 8.8e-43 176.8 101 81.2
AUR62040659 Chenopodium quinoa HOM05D005994 ORTHO05D007322 8.8e-43 176.8 101 81.2
Phvul.006G141600 Phaseolus vulgaris HOM05D005994 ORTHO05D007322 8.8e-43 176.8 101 82.2
SGA_v2.0_scaffold168G38531 Striga asiatica HOM05D005994 ORTHO05D007322 1.2e-42 176.4 100 85.0
Migut.M01676 Erythranthe guttata HOM05D005994 ORTHO05D007322 1.5e-42 176.0 100 84.0
Lalb_Chr03g0035721 Lupinus albus HOM05D005994 ORTHO05D007322 1.5e-42 176.0 100 83.0
Oeu005493.1 Olea europaea HOM05D005994 ORTHO05D007322 1.5e-42 176.0 100 84.0
PGR004G2260 Punica granatum HOM05D005994 ORTHO05D007322 1.5e-42 176.0 100 84.0
vmacro09668 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 1.5e-42 176.0 100 83.0
VMungo0540G2179 Vigna mungo HOM05D005994 ORTHO05D007322 1.5e-42 176.0 101 81.2
TPR.G10599 Trifolium pratense HOM05D005994 ORTHO05D007322 2.0e-42 175.6 101 81.2
Actinidia00094 Actinidia chinensis HOM05D005994 ORTHO05D007322 2.6e-42 175.3 100 84.0
AT4G16450 Arabidopsis thaliana HOM05D005994 ORTHO05D007322 2.6e-42 175.3 101 82.2
BcaC09g50351 Brassica carinata HOM05D005994 ORTHO05D007322 2.6e-42 175.3 101 83.2
BolC1t02582H Brassica oleracea HOM05D005994 ORTHO05D007322 2.6e-42 175.3 101 83.2
Haze_06972 Corylus avellana HOM05D005994 ORTHO05D007322 2.6e-42 175.3 100 81.0
Sp7g15010 Schrenkiella parvula HOM05D005994 ORTHO05D007322 2.6e-42 175.3 101 83.2
Solyc07g065275.1 Solanum lycopersicum HOM05D005994 ORTHO05D007322 2.6e-42 175.3 100 83.0
GSVIVG01037779001 Vitis vinifera HOM05D005994 ORTHO05D007322 2.6e-42 175.3 100 83.0
CAN.G337.28 Capsicum annuum HOM05D005994 ORTHO05D007322 3.4e-42 174.9 97 84.5
PSO832G1566 Papaver somniferum HOM05D005994 ORTHO05D007322 3.4e-42 174.9 100 83.0
QL05p068624 Quercus lobata HOM05D005994 ORTHO05D007322 4.4e-42 174.5 100 80.0
QL05p068978 Quercus lobata HOM05D005994 ORTHO05D007322 4.4e-42 174.5 100 80.0
PGSC0003DMG400022186 Solanum tuberosum HOM05D005994 ORTHO05D007322 4.4e-42 174.5 97 85.6
THA.LOC104815483 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 4.4e-42 174.5 107 80.4
PSO063G2191 Papaver somniferum HOM05D005994 ORTHO05D007322 5.7e-42 174.1 100 83.0
THA.LOC104810390 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 5.7e-42 174.1 106 80.2
Ciclev10016738m.g Citrus clementina HOM05D005994 ORTHO05D007322 9.8e-42 173.3 130 70.8
Nitab4.5_0000461g0100 Nicotiana tabacum HOM05D005994 ORTHO05D007322 9.8e-42 173.3 99 82.8
Prupe.4G007400 Prunus persica HOM05D005994 ORTHO05D007322 9.8e-42 173.3 100 83.0
Lalb_Chr19g0129971 Lupinus albus HOM05D005994 ORTHO05D007322 1.3e-41 172.9 100 80.0
DCAR_013214 Daucus carota HOM05D005994 ORTHO05D007322 2.2e-41 172.2 100 80.0
CARHR222840 Cardamine hirsuta HOM05D005994 ORTHO05D007322 2.8e-41 171.8 101 80.2
Ca_00743_v3 Cicer arietinum L. HOM05D005994 ORTHO05D007322 2.8e-41 171.8 101 79.2
BcaC06g33480 Brassica carinata HOM05D005994 ORTHO05D007322 3.7e-41 171.4 101 81.2
MD00G1058600 Malus domestica HOM05D005994 ORTHO05D007322 3.7e-41 171.4 100 82.0
CsaV3_1G017030 Cucumis sativus L. HOM05D005994 ORTHO05D007322 4.9e-41 171.0 94 85.1
CsaV3_UNG053450 Cucumis sativus L. HOM05D005994 ORTHO05D007322 4.9e-41 171.0 94 85.1
FAN25G0933 Fragaria x ananassa HOM05D005994 ORTHO05D007322 4.9e-41 171.0 100 80.0
RcHm_v2.0_Chr5g0000881 Rosa chinensis HOM05D005994 ORTHO05D007322 4.9e-41 171.0 100 80.0
A03p49850 Brassica napus HOM05D005994 ORTHO05D007322 6.3e-41 170.6 102 82.4
C07p47910 Brassica napus HOM05D005994 ORTHO05D007322 6.3e-41 170.6 102 82.4
BolC7t45314H Brassica oleracea HOM05D005994 ORTHO05D007322 6.3e-41 170.6 102 82.4
BraA03t14080Z Brassica rapa HOM05D005994 ORTHO05D007322 6.3e-41 170.6 102 82.4
Eucgr.D00619 Eucalyptus grandis HOM05D005994 ORTHO05D007322 6.3e-41 170.6 99 80.8
Medtr2g026500 Medicago truncatula HOM05D005994 ORTHO05D007322 6.3e-41 170.6 101 78.2
Cfa000074 Carpinus fangiana HOM05D005994 ORTHO05D007322 8.3e-41 170.2 100 79.0
ATR0564G257 Amborella trichopoda HOM05D005994 ORTHO05D007322 1.1e-40 169.9 100 81.0
Lsat_1_v5_gn_5_8041 Lactuca sativa HOM05D000063 ORTHO05D000906 1.1e-40 169.9 97 82.5
MD10G1336200 Malus domestica HOM05D005994 ORTHO05D007322 1.4e-40 169.5 100 81.0
FAN21G1761 Fragaria x ananassa HOM05D005994 ORTHO05D007322 1.8e-40 169.1 100 79.0
CDE01G0018 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 4.1e-40 167.9 100 80.0
CDE12G0176 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 4.1e-40 167.9 100 80.0
MBI04_g07210_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 4.1e-40 167.9 97 82.5
Ah.04g166430 Amaranthus hybridus HOM05D000063 ORTHO05D000906 7.0e-40 167.2 94 85.1
CiPaw.10G079600 Carya illinoinensis HOM05D005994 ORTHO05D007322 7.0e-40 167.2 95 84.2
Zm00001eb179550 Zea mays HOM05D005994 ORTHO05D007322 7.0e-40 167.2 101 77.2
Os08g0431500 Oryza sativa ssp. japonica HOM05D005994 ORTHO05D007322 2.0e-39 165.6 99 78.8
Psat1g178480 Pisum sativum HOM05D005994 ORTHO05D007322 2.0e-39 165.6 95 81.1
FvH4_3g00660 Fragaria vesca HOM05D005994 ORTHO05D007322 1.7e-38 162.5 94 80.9
HPP92_013264 Vanilla planifolia HOM05D005994 ORTHO05D007322 8.6e-38 160.2 99 76.8
Peaxi162Scf00285g00824 Petunia axillaris HOM05D005994 ORTHO05D007322 4.4e-34 147.9 97 76.3
Atru.chr1.2350 Acer truncatum HOM05D005994 ORTHO05D007322 8.3e-33 143.7 106 71.7
MBI04_g36325_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 5.9e-31 137.5 100 72.0
SEGI_25373 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 1.7e-25 119.4 78 74.4
Mapoly0008s0024 Marchantia polymorpha HOM05D005994 ORTHO05D007322 1.2e-23 113.2 91 59.3
SEGI_29999 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 1.0e-22 110.2 91 56.0
Pp3c6_28950 Physcomitrium patens HOM05D005994 ORTHO05D007322 2.3e-22 109.0 91 57.1
CBR_g41406 Chara braunii HOM05D005994 ORTHO05D007322 2.5e-21 105.5 90 56.7
Cpa.g.sc3096.1 Carica papaya HOM05D005994 ORTHO05D007322 3.3e-21 105.1 60 83.3
AagrBONN_evm.TU.Sc2ySwM_368.698 Anthoceros agrestis HOM05D005994 ORTHO05D007322 6.2e-20 100.9 90 52.2
AagrBONN_evm.TU.Sc2ySwM_117.3129 Anthoceros agrestis HOM05D005994 ORTHO05D007322 2.0e-18 95.9 90 54.4
MCO11G626 Micromonas commoda HOM05D005994 ORTHO05D007322 8.3e-17 90.5 87 52.9
Nn5g27130 Nelumbo nucifera HOM05D005994 ORTHO05D007322 8.3e-17 90.5 52 82.7
Medtr2g097750 Medicago truncatula HOM05D005994 ORTHO05D007322 1.4e-16 89.7 59 69.5
HanXRQChr17g0564261 Helianthus annuus HOM05D005994 ORTHO05D007322 1.6e-15 86.3 48 81.2
TAR626G0394 Trochodendron aralioides HOM05D005994 ORTHO05D007322 4.6e-15 84.7 51 78.4
SMO223G0003 Selaginella moellendorffii HOM05D005994 ORTHO05D007322 5.1e-14 81.3 87 48.3
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 6.6e-14 80.9 51 72.5
Dinv10313 Davidia involucrata HOM05D005994 ORTHO05D007322 4.3e-13 78.2 94 51.1
Nitab4.5_0005540g0030 Nicotiana tabacum HOM05D005994 ORTHO05D007322 4.0e-11 71.6 52 69.2
Zm00001eb041720 Zea mays HOM05D005994 ORTHO05D007322 6.4e-09 64.3 55 54.5
TAR627G0003 Trochodendron aralioides HOM05D005994 ORTHO05D007322 9.2e-08 60.5 43 65.1


User provided reference genes

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