Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.4e-201 706.1 358 100.0
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 1.6e-192 676.0 355 95.8
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 2.8e-181 638.6 355 90.7
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 5.1e-167 591.3 358 83.2
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 5.6e-166 587.8 357 85.7
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.5e-155 553.1 357 76.5
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 1.5e-155 553.1 384 72.9
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.3e-154 550.1 357 77.0
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 3.8e-154 548.5 357 75.4
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 3.8e-154 548.5 357 75.4
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 8.4e-154 547.4 355 76.3
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 9.3e-153 543.9 357 75.4
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 1.8e-151 539.7 357 77.0
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 2.3e-151 539.3 357 75.4
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 1.1e-150 537.0 357 73.9
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 4.3e-150 535.0 365 73.4
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 9.6e-150 533.9 358 72.6
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 9.6e-150 533.9 357 74.5
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.6e-149 533.1 357 73.4
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 1.6e-149 533.1 357 74.8
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 8.2e-149 530.8 356 75.0
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 2.4e-148 529.3 355 74.4
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 2.4e-148 529.3 357 73.1
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 2.4e-148 529.3 358 74.3
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 4.0e-148 528.5 357 74.8
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 5.3e-148 528.1 357 74.2
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 9.0e-148 527.3 358 72.6
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 9.0e-148 527.3 360 72.2
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 9.0e-148 527.3 357 73.1
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 2.0e-147 526.2 355 73.8
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 3.4e-147 525.4 355 73.8
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 5.8e-147 524.6 358 72.6
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 7.6e-147 524.2 359 72.7
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 7.6e-147 524.2 359 73.0
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 7.6e-147 524.2 355 73.8
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 1.0e-146 523.9 360 72.2
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 2.2e-146 522.7 359 72.4
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 3.8e-146 521.9 358 72.1
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 6.5e-146 521.2 357 72.0
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 8.4e-146 520.8 357 72.5
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 8.4e-146 520.8 358 72.3
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.9e-145 519.6 357 72.3
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 4.2e-145 518.5 356 72.8
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.2e-144 516.9 358 71.8
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 1.6e-144 516.5 359 72.7
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 1.6e-144 516.5 355 72.1
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 1.6e-144 516.5 358 71.2
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 1.6e-144 516.5 360 70.8
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 2.1e-144 516.2 361 72.6
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 2.7e-144 515.8 358 71.8
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 2.7e-144 515.8 357 73.4
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 3.5e-144 515.4 357 73.9
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 4.6e-144 515.0 359 71.6
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 6.0e-144 514.6 358 71.2
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 1.0e-143 513.8 357 71.7
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 1.8e-143 513.1 355 72.4
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 3.0e-143 512.3 358 70.4
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 3.9e-143 511.9 355 72.1
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 3.9e-143 511.9 355 71.8
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 3.9e-143 511.9 355 72.1
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 5.1e-143 511.5 357 73.1
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 8.7e-143 510.8 358 70.1
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 1.9e-142 509.6 355 71.0
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 1.9e-142 509.6 356 71.9
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 1.9e-142 509.6 355 73.2
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 4.3e-142 508.4 358 69.8
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 7.4e-142 507.7 359 71.0
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 2.2e-141 506.1 357 71.7
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 8.2e-141 504.2 353 71.4
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 1.1e-140 503.8 357 70.6
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 1.8e-140 503.1 379 67.5
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 4.1e-140 501.9 355 70.1
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 5.3e-140 501.5 357 70.0
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 5.3e-140 501.5 366 68.9
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 9.0e-140 500.7 358 70.7
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 1.2e-139 500.4 355 69.9
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 2.6e-139 499.2 355 70.1
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 7.6e-139 497.7 357 68.9
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 1.3e-138 496.9 360 67.5
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 2.2e-138 496.1 358 67.6
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 2.2e-138 496.1 358 67.9
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 6.5e-138 494.6 356 69.9
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 4.2e-137 491.9 357 68.3
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 9.3e-137 490.7 357 68.1
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 2.1e-136 489.6 356 69.7
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 4.6e-136 488.4 356 67.4
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 7.9e-136 487.6 383 63.7
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 7.9e-136 487.6 373 68.4
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 7.9e-136 487.6 356 68.0
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 1.3e-135 486.9 355 70.7
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 3.0e-135 485.7 360 66.9
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 5.1e-135 485.0 359 69.9
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 3.3e-134 482.3 356 70.2
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 1.3e-133 480.3 355 68.7
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.3e-133 480.3 359 66.6
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 2.8e-133 479.2 378 64.3
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 1.2e-131 473.8 344 69.8
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 4.5e-131 471.9 362 65.5
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 1.0e-130 470.7 354 64.1
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 1.7e-130 469.9 354 64.7
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 2.9e-130 469.2 360 66.7
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 6.5e-130 468.0 362 66.9
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 6.5e-130 468.0 322 71.7
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 8.5e-130 467.6 356 67.4
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 1.9e-129 466.5 354 65.0
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.1e-126 457.2 376 63.3
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 5.7e-126 454.9 313 71.9
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.4e-124 450.3 293 73.7
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 1.2e-123 447.2 305 70.8
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.7e-117 426.8 363 59.5
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.2e-115 420.6 432 54.4
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 2.0e-115 419.9 345 62.3
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 1.3e-114 417.2 363 59.0
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 2.7e-112 409.5 356 60.7
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 1.2e-110 404.1 291 68.7
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 2.0e-110 403.3 353 56.7
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 5.9e-107 391.7 355 57.7
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 3.1e-92 342.8 258 65.9
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 8.9e-87 324.7 288 61.8
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 1.7e-82 310.5 211 74.4
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 6.2e-80 302.0 358 50.6
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 2.5e-73 280.0 282 57.4
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 5.8e-70 268.9 465 38.5
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 1.3e-69 267.7 384 43.5
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.5e-65 254.2 186 73.7
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 1.7e-61 240.7 177 61.6
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 2.7e-51 206.8 404 37.9
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.3e-50 204.5 160 61.2
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 3.5e-43 179.9 137 66.4
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 3.9e-42 176.4 311 39.2
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 6.7e-42 175.6 380 32.4
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 2.5e-41 173.7 107 77.6
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 6.5e-29 132.5 257 34.2
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 3.0e-26 123.6 288 29.2
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.5e-25 121.3 263 33.5
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 1.8e-23 114.4 185 42.7
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.7e-16 90.1 58 70.7
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 6.3e-16 89.4 68 70.6
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 8.2e-16 89.0 135 40.0
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 9.1e-15 85.5 68 72.1
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 2.0e-14 84.3 68 64.7
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.0e-13 82.0 125 42.4
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 1.3e-13 81.6 58 69.0
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-11 75.1 64 57.8
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 3.9e-10 70.1 68 54.4
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 8.8e-10 68.9 71 56.3
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 1.3e-08 65.1 70 48.6
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 4.1e-07 60.1 83 47.0
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 7.0e-07 59.3 97 38.1
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-06 58.5 63 44.4
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.0e-06 57.8 40 67.5


User provided reference genes

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