Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.3e-203 713.0 391 100.0
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.1e-175 620.2 392 88.5
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 8.0e-174 614.0 409 85.6
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 5.0e-168 594.7 388 86.1
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 1.2e-124 450.7 403 69.5
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 9.3e-114 414.5 250 92.8
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 6.2e-110 401.7 401 62.3
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 8.1e-110 401.4 396 62.6
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 1.2e-105 387.5 390 63.6
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.7e-105 386.3 393 61.8
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 3.5e-105 386.0 400 61.5
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 6.0e-105 385.2 390 63.1
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 6.7e-104 381.7 398 60.6
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 2.5e-103 379.8 403 60.5
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 4.3e-103 379.0 390 62.3
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 7.4e-103 378.3 406 62.3
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.6e-102 377.1 404 61.1
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.8e-102 375.6 400 59.2
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 6.3e-102 375.2 393 60.3
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 6.3e-102 375.2 402 58.7
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.5e-100 370.5 405 59.8
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 3.4e-100 369.4 415 58.6
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 7.6e-100 368.2 396 60.6
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.9e-98 363.6 353 63.5
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 2.5e-98 363.2 394 59.6
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 3.9e-96 355.9 402 58.0
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.1e-95 354.4 419 57.5
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 2.5e-95 353.2 399 57.1
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 7.4e-95 351.7 363 60.6
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 9.7e-95 351.3 384 59.1
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.7e-94 349.4 406 57.1
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 4.8e-94 349.0 346 63.3
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 6.9e-93 345.1 420 55.5
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 4.5e-92 342.4 409 56.5
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 4.5e-92 342.4 402 57.0
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 5.9e-92 342.0 355 59.7
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 2.2e-91 340.1 388 59.3
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 2.2e-91 340.1 406 55.9
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 3.8e-91 339.3 396 56.6
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 8.5e-91 338.2 381 58.3
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.4e-90 337.4 355 58.9
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.9e-90 337.0 404 56.4
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.5e-90 336.7 381 58.0
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.5e-90 336.7 355 58.9
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 2.5e-90 336.7 415 56.6
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.2e-90 336.3 381 57.7
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 2.1e-89 333.6 399 58.1
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 4.6e-89 332.4 401 55.9
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 4.6e-89 332.4 401 58.6
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.0e-88 331.3 396 56.6
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 3.9e-88 329.3 407 56.8
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 8.8e-88 328.2 408 56.6
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.1e-87 327.8 399 57.1
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 1.1e-87 327.8 403 57.3
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 4.1e-85 319.3 391 56.0
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 4.5e-84 315.8 389 55.5
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 2.7e-81 306.6 424 52.8
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 1.8e-80 303.9 389 55.3
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.1e-79 301.2 389 53.2
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 5.7e-79 298.9 334 59.0
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 7.4e-79 298.5 398 53.0
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 9.7e-79 298.1 426 51.9
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 2.2e-78 297.0 398 53.0
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 8.2e-78 295.0 391 55.2
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 8.2e-78 295.0 400 55.2
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.1e-77 293.1 321 60.1
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 1.6e-76 290.8 426 51.4
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 1.0e-75 288.1 387 52.2
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 1.3e-75 287.7 348 57.2
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 2.2e-75 287.0 397 52.4
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 3.8e-75 286.2 389 52.7
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 1.9e-74 283.9 333 59.5
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 2.5e-74 283.5 380 52.4
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 4.2e-74 282.7 389 51.9
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 1.2e-73 281.2 395 50.4
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.2e-73 281.2 385 49.6
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 1.6e-73 280.8 390 50.8
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 6.1e-73 278.9 387 49.1
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 1.8e-72 277.3 394 53.6
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.0e-71 273.9 392 51.5
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 5.7e-71 272.3 356 56.5
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 1.3e-70 271.2 398 53.0
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.3e-70 271.2 400 52.2
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 4.8e-70 269.2 425 48.0
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 6.3e-70 268.9 370 50.3
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 2.4e-69 266.9 413 49.4
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 2.4e-69 266.9 394 52.0
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 5.9e-68 262.3 397 46.9
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 1.0e-67 261.5 391 52.4
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 3.8e-67 259.6 385 51.9
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 3.8e-67 259.6 385 51.9
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 3.8e-67 259.6 331 53.8
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 1.5e-66 257.7 388 51.5
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 1.9e-66 257.3 385 51.4
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 1.9e-66 257.3 397 48.9
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 3.2e-66 256.5 389 51.7
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 5.5e-66 255.8 390 49.2
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 2.1e-65 253.8 368 48.9
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 2.7e-65 253.4 388 51.0
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 2.7e-65 253.4 402 49.8
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 6.1e-65 252.3 389 49.1
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 8.0e-65 251.9 306 58.5
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 6.8e-64 248.8 385 50.9
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 8.8e-64 248.4 397 51.6
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 8.8e-64 248.4 389 48.6
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 1.2e-63 248.1 373 52.3
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 2.6e-63 246.9 392 50.8
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 4.4e-63 246.1 355 52.7
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 7.5e-63 245.4 395 46.8
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 3.8e-59 233.0 348 48.9
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.6e-57 227.6 298 54.4
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 4.0e-56 223.0 327 52.9
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 6.8e-56 222.2 392 44.6
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.2e-52 211.5 401 43.1
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 8.6e-51 205.3 276 52.2
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 8.6e-51 205.3 276 52.2
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 9.5e-50 201.8 424 41.3
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 8.0e-49 198.7 395 43.5
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 2.6e-47 193.7 283 50.2
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 1.6e-44 184.5 189 61.9
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 1.3e-43 181.4 166 63.9
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 1.6e-41 174.5 407 37.6
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 3.6e-41 173.3 389 41.4
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 1.0e-40 171.8 237 53.6
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 6.0e-36 156.0 392 36.5
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 1.0e-35 155.2 309 43.7
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 7.3e-34 149.1 396 37.4
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.5e-31 141.4 203 50.7
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.5e-31 141.4 203 50.7
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 3.7e-30 136.7 193 51.8
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 8.3e-30 135.6 106 70.8
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-29 135.2 213 47.4
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-28 131.7 125 60.0
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 3.9e-27 126.7 115 68.7
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 3.6e-25 120.2 361 35.7
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 1.5e-23 114.8 198 48.0
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.2e-22 110.9 205 41.5
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.9e-22 110.5 204 41.7
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.4e-22 109.0 204 41.2
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-21 108.6 204 41.2
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 2.4e-21 107.5 145 49.0
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.2e-21 107.1 204 40.7
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.1e-21 106.7 204 41.2
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 7.8e-20 102.4 291 36.8
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 6.2e-17 92.8 83 73.5
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 1.5e-15 88.2 108 58.3
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.4e-14 82.8 204 35.3
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 2.1e-12 77.8 74 66.2
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 2.5e-10 70.9 156 34.6
QL07p047840 Quercus lobata HOM05D004683 ORTHO05D005388 7.3e-10 69.3 60 68.3
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 1.8e-08 64.7 151 40.4
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.2e-07 62.0 115 43.5
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 7.6e-07 59.3 147 34.7


User provided reference genes

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