Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.7e-71 272.7 148 100.0
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 4.8e-63 244.6 148 90.5
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 7.7e-61 237.3 148 86.5
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 5.5e-59 231.1 145 87.6
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 8.2e-55 217.2 148 79.1
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 2.4e-54 215.7 148 77.0
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 3.1e-54 215.3 148 79.1
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 7.0e-54 214.2 148 77.7
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 1.6e-53 213.0 148 77.7
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.5e-53 211.8 148 77.7
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.5e-53 211.8 148 77.7
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.5e-53 211.8 148 77.7
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 3.5e-53 211.8 147 76.9
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 4.5e-53 211.5 148 77.0
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.3e-52 209.9 148 76.4
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 3.8e-52 208.4 148 74.3
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 3.2e-51 205.3 148 74.3
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 7.2e-51 204.1 148 73.0
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 1.6e-50 203.0 148 73.6
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 3.6e-50 201.8 148 72.3
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 6.1e-50 201.1 148 72.3
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 1.0e-49 200.3 148 70.9
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.0e-49 200.3 148 73.0
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.3e-49 199.1 143 74.8
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 5.2e-49 198.0 148 71.6
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 1.2e-48 196.8 148 70.3
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 2.6e-48 195.7 148 69.6
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 4.4e-48 194.9 148 70.9
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 7.5e-48 194.1 148 69.6
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 9.8e-48 193.7 148 68.2
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.8e-47 191.4 144 70.8
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 6.3e-47 191.0 148 69.6
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 1.1e-46 190.3 143 70.6
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 1.4e-46 189.9 148 68.2
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 4.1e-46 188.3 150 70.0
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.1e-46 188.3 144 69.4
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 7.0e-46 187.6 143 69.9
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 1.6e-45 186.4 148 69.6
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 5.0e-44 181.4 148 64.9
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 7.2e-43 177.6 150 65.3
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 9.5e-43 177.2 148 65.5
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 1.2e-42 176.8 148 66.9
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 4.7e-42 174.9 152 64.5
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 6.1e-42 174.5 148 65.5
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 1.8e-41 172.9 150 66.7
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 1.8e-41 172.9 150 64.0
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 4.0e-41 171.8 150 63.3
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 5.2e-41 171.4 140 65.0
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 1.5e-40 169.9 148 61.5
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 2.0e-40 169.5 143 65.7
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 3.4e-40 168.7 148 63.5
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 7.5e-40 167.5 148 63.5
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 2.8e-39 165.6 120 75.0
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 3.7e-39 165.2 119 74.8
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 4.9e-39 164.9 150 61.3
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 4.9e-39 164.9 144 63.2
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 8.3e-39 164.1 119 74.8
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 8.3e-39 164.1 119 74.8
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 1.4e-38 163.3 151 62.9
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 1.8e-38 162.9 151 62.3
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 5.4e-38 161.4 152 61.8
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.6e-37 159.8 149 61.1
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.6e-37 159.8 149 61.1
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.6e-37 159.8 138 61.6
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 1.6e-37 159.8 151 61.6
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.7e-37 159.1 149 60.4
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 3.5e-37 158.7 121 70.2
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 3.5e-37 158.7 148 66.2
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 6.6e-36 154.5 114 73.7
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 6.6e-36 154.5 132 65.2
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 8.6e-36 154.1 152 61.2
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 1.1e-35 153.7 150 58.7
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 1.5e-35 153.3 148 59.5
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 1.9e-35 152.9 148 54.7
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 1.9e-35 152.9 148 55.4
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 1.9e-35 152.9 155 58.1
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 3.3e-35 152.1 115 69.6
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 4.3e-35 151.8 114 72.8
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 7.3e-35 151.0 121 70.2
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 2.1e-34 149.4 141 56.0
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 2.1e-34 149.4 119 68.1
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 2.1e-34 149.4 141 57.4
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.6e-34 148.7 144 59.7
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 4.7e-34 148.3 143 59.4
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 1.8e-33 146.4 148 58.1
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.2e-33 144.8 150 58.0
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 5.2e-33 144.8 151 55.0
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 8.9e-33 144.1 149 59.7
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 8.9e-33 144.1 148 53.4
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 1.2e-32 143.7 148 53.4
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.2e-32 143.7 118 65.3
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 2.0e-32 142.9 148 52.7
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 2.0e-32 142.9 148 53.4
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 2.6e-32 142.5 148 57.4
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 3.4e-32 142.1 148 52.0
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 3.4e-32 142.1 148 52.0
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 3.4e-32 142.1 148 52.0
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 3.4e-32 142.1 148 53.4
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.4e-32 141.7 150 56.7
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 5.8e-32 141.4 148 52.0
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 9.8e-32 140.6 148 52.0
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.3e-31 140.2 148 51.4
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.3e-31 140.2 148 51.4
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 6.4e-31 137.9 148 54.1
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.0e-29 132.9 138 56.5
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 2.0e-29 132.9 112 62.5
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 3.0e-28 129.0 149 49.0
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 5.0e-28 128.3 111 62.2
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 5.0e-28 128.3 149 55.0
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.1e-26 122.9 150 49.3
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.1e-26 122.9 150 49.3
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 4.7e-26 121.7 125 55.2
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 1.4e-25 120.2 119 55.5
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.2e-25 118.2 151 50.3
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 1.7e-23 113.2 149 49.0
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 6.0e-21 104.8 148 41.2
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.3e-20 102.8 79 67.1
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 6.6e-20 101.3 119 53.8
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 2.8e-18 95.9 75 68.0
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 1.5e-16 90.1 92 62.0
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.6e-16 89.4 103 54.4
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 4.4e-16 88.6 91 57.1
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-15 86.7 103 53.4
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 1.9e-14 83.2 72 66.7
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.3e-12 77.0 69 60.9
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 3.0e-12 75.9 59 67.8
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 8.6e-12 74.3 61 65.6
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.5e-11 72.8 92 52.2
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.5e-11 72.8 86 47.7
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.6e-11 71.6 100 53.0
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 5.6e-11 71.6 100 53.0
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 7.3e-11 71.2 70 64.3
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 1.6e-10 70.1 90 52.2
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 8.4e-07 57.8 136 33.1
ATR0794G127 Amborella trichopoda HOM05D005880 ORTHO05D007114 4.2e-06 55.5 130 30.0


User provided reference genes

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