Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G001600 Populus trichocarpa HOM05D008403 ORTHO05D010317 1.5e-98 362.8 187 100.0
Manes.08G015200 Manihot esculenta HOM05D008403 ORTHO05D010317 6.8e-38 161.4 172 55.2
Sabra08G0008100 Salix brachista HOM05D008403 ORTHO05D010317 2.4e-35 152.9 175 51.4
Potri.008G013400 Populus trichocarpa HOM05D008403 ORTHO05D010317 5.4e-35 151.8 173 52.0
FvH4_3g00110 Fragaria vesca HOM05D008403 ORTHO05D010317 3.5e-34 149.1 154 57.1
COL.COLO4_27522 Corchorus olitorius HOM05D008403 ORTHO05D010317 1.3e-33 147.1 157 49.7
RcHm_v2.0_Chr5g0000141 Rosa chinensis HOM05D008403 ORTHO05D010317 3.9e-33 145.6 154 55.2
Duzib268G1784 Durio zibethinus HOM05D008403 ORTHO05D010317 5.0e-33 145.2 171 49.7
CANSAT56G1928 Cannabis sativa HOM05D008403 ORTHO05D010317 1.9e-32 143.3 158 51.3
FAN25G0691 Fragaria x ananassa HOM05D000186 ORTHO05D001124 1.9e-32 143.3 154 55.2
Rhsim02G0087900 Rhododendron simsii HOM05D008403 ORTHO05D010317 1.2e-31 140.6 157 51.6
QL05p066293 Quercus lobata HOM05D008403 ORTHO05D010317 2.1e-31 139.8 182 48.4
TWI31G1421 Tripterygium wilfordii HOM05D008403 ORTHO05D010317 2.1e-31 139.8 179 49.2
CiPaw.08G030100 Carya illinoinensis HOM05D008403 ORTHO05D010317 2.8e-31 139.4 175 51.4
Cpa.g.sc27.190 Carica papaya HOM05D008403 ORTHO05D010317 3.6e-31 139.0 168 49.4
Aqoxy4G02379 Aquilegia oxysepala HOM05D008403 ORTHO05D010317 8.9e-30 134.4 179 45.3
CiPaw.09G112600 Carya illinoinensis HOM05D008403 ORTHO05D010317 4.4e-29 132.1 174 46.6
QL05p066264 Quercus lobata HOM05D008403 ORTHO05D010317 9.8e-29 131.0 178 47.8
CSS0029866 Camellia sinensis var. sinensis HOM05D008403 ORTHO05D010317 2.9e-28 129.4 151 50.3
PGR004G1501 Punica granatum HOM05D008403 ORTHO05D010317 2.9e-28 129.4 182 42.3
Prupe.4G001200 Prunus persica HOM05D008403 ORTHO05D010317 8.3e-28 127.9 176 45.5
Atru.chr2.423 Acer truncatum HOM05D008403 ORTHO05D010317 9.2e-27 124.4 152 47.4
Atru.chr2.1377 Acer truncatum HOM05D008403 ORTHO05D010317 7.8e-26 121.3 152 44.7
Lj6g0020324 Lotus japonicus HOM05D008403 ORTHO05D010317 1.0e-25 120.9 153 44.4
Ciclev10017450m.g Citrus clementina HOM05D008403 ORTHO05D010317 1.7e-25 120.2 154 44.8
Atru.chr2.427 Acer truncatum HOM05D008403 ORTHO05D010317 2.5e-24 116.3 152 44.1
Atru.chr1.2232 Acer truncatum HOM05D008403 ORTHO05D010317 3.3e-24 115.9 152 45.4
PGR004G1348 Punica granatum HOM05D008403 ORTHO05D010317 9.5e-24 114.4 151 43.0
Oeu016936.1 Olea europaea HOM05D008403 ORTHO05D010317 2.8e-23 112.8 151 39.7
Actinidia04549 Actinidia chinensis HOM05D008403 ORTHO05D010317 2.3e-22 109.8 121 51.2
Lalb_Chr20g0119681 Lupinus albus HOM05D008403 ORTHO05D010317 4.0e-22 109.0 172 38.4
Eucgr.D00968 Eucalyptus grandis HOM05D008403 ORTHO05D010317 3.4e-21 105.9 180 42.2
SGA_v2.0_scaffold7G03659 Striga asiatica HOM05D008403 ORTHO05D010317 9.2e-19 97.8 157 36.9
PSO675G4416 Papaver somniferum HOM05D008403 ORTHO05D010317 3.5e-18 95.9 181 37.6
PSO541G3674 Papaver somniferum HOM05D008403 ORTHO05D010317 2.5e-16 89.7 157 39.5
PSO675G0961 Papaver somniferum HOM05D008403 ORTHO05D010317 2.5e-16 89.7 178 35.4
PSO732G0092 Papaver somniferum HOM05D008403 ORTHO05D010317 5.6e-16 88.6 191 34.6
Rhsim02G0088000 Rhododendron simsii HOM05D008403 ORTHO05D010317 7.3e-16 88.2 186 36.0
Migut.F01664 Erythranthe guttata HOM05D008403 ORTHO05D010317 1.4e-14 84.0 159 33.3
Oeu017922.1 Olea europaea HOM05D008403 ORTHO05D010317 1.4e-14 84.0 102 42.2
AL8G42030 Arabidopsis lyrata HOM05D004113 ORTHO05D005233 1.2e-13 80.9 181 35.4
Carub.0008s2541 Capsella rubella HOM05D004113 ORTHO05D005233 1.5e-13 80.5 183 33.3
AT5G64620 Arabidopsis thaliana HOM05D004113 ORTHO05D005233 2.6e-13 79.7 182 34.1
TAR627G0716 Trochodendron aralioides HOM05D008403 ORTHO05D010317 2.6e-13 79.7 163 36.2
SGA_v2.0_scaffold186G40151 Striga asiatica HOM05D008403 ORTHO05D010317 7.6e-13 78.2 172 32.0
Ciclev10002604m.g Citrus clementina HOM05D004113 ORTHO05D005233 1.7e-12 77.0 156 35.3
Nn1g08310 Nelumbo nucifera HOM05D008403 ORTHO05D010317 2.9e-12 76.3 151 31.1
RhsimUnG0017500 Rhododendron simsii HOM05D004113 ORTHO05D005233 2.9e-12 76.3 172 34.3
Oeu002789.2 Olea europaea HOM05D008403 ORTHO05D010317 3.7e-12 75.9 114 36.8
Lalb_Chr15g0088411 Lupinus albus HOM05D008403 ORTHO05D010317 1.4e-11 73.9 79 53.2
A09p08750 Brassica napus HOM05D004113 ORTHO05D005233 1.9e-11 73.6 176 33.0
BraA09t36524Z Brassica rapa HOM05D004113 ORTHO05D005233 1.9e-11 73.6 176 33.0
BcaB04g19979 Brassica carinata HOM05D004113 ORTHO05D005233 2.4e-11 73.2 181 32.0
TAR627G0557 Trochodendron aralioides HOM05D008403 ORTHO05D010317 4.1e-11 72.4 195 29.2
Actinidia19773 Actinidia chinensis HOM05D003556 ORTHO05D003404 5.4e-11 72.0 152 32.2
Cfa002816 Carpinus fangiana HOM05D004113 ORTHO05D005233 5.4e-11 72.0 168 35.7
MBI19_g19941_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 5.4e-11 72.0 175 32.0
Prupe.6G197400 Prunus persica HOM05D004113 ORTHO05D005233 5.4e-11 72.0 167 33.5
MBI19_g19942_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 7.1e-11 71.6 175 32.0
BraA06t26077Z Brassica rapa HOM05D004113 ORTHO05D005233 9.2e-11 71.2 189 32.3
Lalb_Chr08g0238441 Lupinus albus HOM05D004113 ORTHO05D005233 1.2e-10 70.9 175 32.6
RcHm_v2.0_Chr2g0120401 Rosa chinensis HOM05D004113 ORTHO05D005233 1.2e-10 70.9 166 32.5
Thecc.06G243800 Theobroma cacao HOM05D014554 ORTHO05D010317 1.6e-10 70.5 181 33.7
Migut.M01476 Erythranthe guttata HOM05D008403 ORTHO05D010317 2.1e-10 70.1 170 34.7
Cc07_g18140 Coffea canephora HOM05D004113 ORTHO05D005233 3.5e-10 69.3 178 32.0
Lsat_1_v5_gn_8_17501 Lactuca sativa HOM05D004113 ORTHO05D005233 3.5e-10 69.3 146 34.9
Oeu004248.1 Olea europaea HOM05D004113 ORTHO05D005233 3.5e-10 69.3 162 31.5
DCAR_001364 Daucus carota HOM05D004113 ORTHO05D005233 4.6e-10 68.9 172 33.1
Thhalv10005004m.g Eutrema salsugineum HOM05D004113 ORTHO05D005233 4.6e-10 68.9 171 29.8
FvH4_1g24160 Fragaria vesca HOM05D004113 ORTHO05D005233 4.6e-10 68.9 163 31.9
FAN16G3582 Fragaria x ananassa HOM05D004113 ORTHO05D005233 4.6e-10 68.9 163 31.9
FAN19G1994 Fragaria x ananassa HOM05D004113 ORTHO05D005233 4.6e-10 68.9 163 31.9
Glyma.06G152400 Glycine max HOM05D004113 ORTHO05D005233 4.6e-10 68.9 176 31.2
TPR.G34657 Trifolium pratense HOM05D004113 ORTHO05D005233 4.6e-10 68.9 174 30.5
CARHR278590 Cardamine hirsuta HOM05D004113 ORTHO05D005233 6.0e-10 68.6 181 32.0
Ca_16933_v3 Cicer arietinum L. HOM05D004113 ORTHO05D005233 6.0e-10 68.6 177 34.5
MD01G1038300 Malus domestica HOM05D004113 ORTHO05D005233 6.0e-10 68.6 171 32.7
VMungo1309G2376 Vigna mungo HOM05D004113 ORTHO05D005233 6.0e-10 68.6 174 31.0
BcaC04g23305 Brassica carinata HOM05D004113 ORTHO05D005233 7.8e-10 68.2 176 32.4
C09p09900 Brassica napus HOM05D004113 ORTHO05D005233 7.8e-10 68.2 176 32.4
BolC9t53899H Brassica oleracea HOM05D004113 ORTHO05D005233 7.8e-10 68.2 176 32.4
FAN28G2384 Fragaria x ananassa HOM05D004113 ORTHO05D005233 7.8e-10 68.2 163 33.1
Lj1g0003494 Lotus japonicus HOM05D004113 ORTHO05D005233 7.8e-10 68.2 176 31.8
Psat0s10365g0080 Pisum sativum HOM05D004113 ORTHO05D005233 7.8e-10 68.2 171 31.0
Psat5g060000 Pisum sativum HOM05D004113 ORTHO05D005233 7.8e-10 68.2 171 31.0
RcHm_v2.0_Chr3g0486661 Rosa chinensis HOM05D008191 ORTHO05D010044 7.8e-10 68.2 178 29.2
Sp2g27680 Schrenkiella parvula HOM05D004113 ORTHO05D005233 7.8e-10 68.2 177 32.8
Haze_25111 Corylus avellana HOM05D004113 ORTHO05D005233 1.0e-09 67.8 170 34.1
FAN26G3157 Fragaria x ananassa HOM05D004113 ORTHO05D005233 1.0e-09 67.8 163 31.9
HanXRQChr08g0218241 Helianthus annuus HOM05D004113 ORTHO05D005233 1.0e-09 67.8 147 32.0
Dinv06063 Davidia involucrata HOM05D004113 ORTHO05D005233 1.3e-09 67.4 158 33.5
Glyma.04G214000 Glycine max HOM05D004113 ORTHO05D005233 1.3e-09 67.4 176 30.7
Hma1.2p1_0528F.1_g173060 Hydrangea macrophylla HOM05D004113 ORTHO05D005233 1.3e-09 67.4 172 30.2
MBI13_g00568_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D001819 1.3e-09 67.4 170 27.1
HanXRQChr12g0368871 Helianthus annuus HOM05D004113 ORTHO05D005233 1.7e-09 67.0 154 31.2
MBI19_g08236_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D010044 1.7e-09 67.0 168 30.4
Phvul.009G149400 Phaseolus vulgaris HOM05D004113 ORTHO05D005233 1.7e-09 67.0 176 30.7
TAR627G0317 Trochodendron aralioides HOM05D008403 ORTHO05D010317 2.3e-09 66.6 180 28.3
arahy.Tifrunner.gnm1.ann1.FMR9EU Arachis hypogaea HOM05D004113 ORTHO05D005233 3.0e-09 66.2 170 31.2
BcaB02g09804 Brassica carinata HOM05D004113 ORTHO05D005233 3.0e-09 66.2 189 30.7
TAR633G1553 Trochodendron aralioides HOM05D012615 ORTHO05D010044 3.0e-09 66.2 177 29.9
Oeu047690.1 Olea europaea HOM05D004113 ORTHO05D005233 3.9e-09 65.9 166 30.1
arahy.Tifrunner.gnm1.ann1.PRK495 Arachis hypogaea HOM05D004113 ORTHO05D005233 5.1e-09 65.5 168 31.5
Medtr3g095980 Medicago truncatula HOM05D004113 ORTHO05D005233 5.1e-09 65.5 172 30.2
CARHR287460 Cardamine hirsuta HOM05D004113 ORTHO05D005233 6.6e-09 65.1 176 29.5
VMungo0251G1253 Vigna mungo HOM05D004113 ORTHO05D005233 6.6e-09 65.1 145 31.7
Gohir.A06G202800 Gossypium hirsutum HOM05D014554 ORTHO05D010317 8.6e-09 64.7 179 32.4
PGSC0003DMG400028678 Solanum tuberosum HOM05D004113 ORTHO05D005233 1.5e-08 63.9 169 30.2
MBI18_g25093_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 2.5e-08 63.2 178 31.5
Aa31LG1G17330 Aethionema arabicum HOM05D004113 ORTHO05D005233 3.3e-08 62.8 178 29.2
Gorai.010G247400 Gossypium raimondii HOM05D014554 ORTHO05D010317 3.3e-08 62.8 180 32.8
QL06p029175 Quercus lobata HOM05D004113 ORTHO05D005233 3.3e-08 62.8 146 31.5
Cfa018298 Carpinus fangiana HOM05D004894 ORTHO05D005689 4.3e-08 62.4 170 34.1
Haze_17777 Corylus avellana HOM05D004894 ORTHO05D005689 4.3e-08 62.4 126 35.7
Gohir.D06G218900 Gossypium hirsutum HOM05D014554 ORTHO05D010317 4.3e-08 62.4 180 32.8
Solyc11g005820.1 Solanum lycopersicum HOM05D004113 ORTHO05D005233 5.6e-08 62.0 172 30.2
Haze_17792 Corylus avellana HOM05D004894 ORTHO05D005689 7.3e-08 61.6 170 33.5
MD15G1314600 Malus domestica HOM05D004113 ORTHO05D005233 7.3e-08 61.6 175 29.1
Thecc.02G296800 Theobroma cacao HOM05D008403 ORTHO05D010317 7.3e-08 61.6 80 48.8
MBI19_g26312_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 9.6e-08 61.2 174 28.7
Sopen11g001780 Solanum pennellii HOM05D004113 ORTHO05D005233 9.6e-08 61.2 171 30.4
Actinidia14750 Actinidia chinensis HOM05D009438 ORTHO05D010870 1.2e-07 60.8 164 29.3
CAN.G1163.3 Capsicum annuum HOM05D004113 ORTHO05D005233 1.2e-07 60.8 165 29.7
Rhsim04G0244100 Rhododendron simsii HOM05D003146 ORTHO05D001819 1.2e-07 60.8 165 29.1
Sabra05G0018000 Salix brachista HOM05D008339 ORTHO05D009712 1.2e-07 60.8 169 28.4
Aqoxy5G02176 Aquilegia oxysepala HOM05D004113 ORTHO05D005233 1.6e-07 60.5 173 28.9
CiPaw.03G129200 Carya illinoinensis HOM05D004113 ORTHO05D005233 2.1e-07 60.1 155 35.5
Sc01g0006950 Simmondsia chinensis HOM05D004113 ORTHO05D005233 2.1e-07 60.1 155 29.0
vmacro07979 Vaccinium macrocarpon HOM05D003146 ORTHO05D001819 3.6e-07 59.3 164 31.1
MBI19_g26316_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 4.7e-07 58.9 173 28.9
Lj6g0019770 Lotus japonicus HOM05D000001 ORTHO05D010775 8.1e-07 58.2 78 39.7
Sed0024266 Sechium edule HOM05D004113 ORTHO05D005233 8.1e-07 58.2 155 30.3
MBI09_g02146_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 1.1e-06 57.8 171 29.8
Nn1g00650 Nelumbo nucifera HOM05D001445 ORTHO05D001261 1.1e-06 57.8 178 30.9
ATR0693G401 Amborella trichopoda HOM05D001445 ORTHO05D001261 1.4e-06 57.4 186 31.7
MBI09_g40718_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 1.8e-06 57.0 163 31.3
CiPaw.01G135600 Carya illinoinensis HOM05D001578 ORTHO05D001207 2.4e-06 56.6 155 31.6
TWI75G0632 Tripterygium wilfordii HOM05D004113 ORTHO05D005233 2.4e-06 56.6 169 30.2
CiPaw.08G093400 Carya illinoinensis HOM05D003556 ORTHO05D003404 4.0e-06 55.8 125 32.0
Os01g0311700 Oryza sativa ssp. japonica HOM05D003556 ORTHO05D003404 4.0e-06 55.8 185 28.1
Zm00001eb340180 Zea mays HOM05D003556 ORTHO05D003404 4.0e-06 55.8 158 25.9
QL05p060436 Quercus lobata HOM05D012615 ORTHO05D010044 5.2e-06 55.5 152 27.0
Cfa004856 Carpinus fangiana HOM05D012615 ORTHO05D010044 8.9e-06 54.7 176 27.3
Lalb_Chr00c34g0408621 Lupinus albus HOM05D004113 ORTHO05D005233 8.9e-06 54.7 176 27.3
Lalb_Chr12g0203181 Lupinus albus HOM05D004113 ORTHO05D005233 8.9e-06 54.7 176 27.3
MBI07_g43317_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D001261 8.9e-06 54.7 127 30.7


User provided reference genes

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