Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 0.0e+00 1218.4 738 100.0
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 8.8e-291 1003.4 738 81.8
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 4.0e-259 898.3 765 73.6
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 7.1e-232 807.7 758 67.4
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 5.2e-174 615.5 754 56.6
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 5.9e-170 602.1 766 55.9
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 3.9e-145 519.6 326 87.4
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 2.9e-140 503.4 778 49.7
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.9e-139 500.7 812 51.7
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 7.1e-139 498.8 780 50.0
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 4.6e-138 496.1 812 50.6
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 1.2e-133 481.5 743 54.0
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 7.8e-130 468.8 768 51.8
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.7e-129 467.6 787 50.8
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.1e-127 460.7 727 51.0
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 4.5e-125 453.0 717 50.6
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 2.2e-124 450.7 794 51.1
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 2.1e-119 434.1 718 50.1
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 5.3e-118 429.5 772 49.5
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 2.6e-117 427.2 775 50.5
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 1.6e-114 417.9 779 48.4
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 2.3e-113 414.1 787 49.7
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 2.5e-112 410.6 797 48.4
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 9.6e-112 408.7 791 46.0
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 1.4e-107 394.8 771 47.1
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 5.5e-107 392.9 787 43.2
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 4.6e-106 389.8 806 43.1
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 1.3e-105 388.3 714 46.9
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 1.8e-105 387.9 798 44.7
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 3.0e-105 387.1 765 47.3
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 8.7e-105 385.6 795 42.1
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.9e-104 384.4 777 44.3
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.8e-103 380.6 726 44.8
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 2.6e-101 374.0 766 44.9
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 3.8e-100 370.2 784 45.2
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 3.8e-100 370.2 799 47.4
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 1.4e-99 368.2 792 46.7
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 6.1e-98 362.8 764 41.1
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 3.9e-97 360.1 771 41.5
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 5.1e-97 359.8 774 44.7
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.1e-96 358.6 772 44.0
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 1.9e-96 357.8 787 48.0
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.9e-96 357.8 729 43.1
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 3.3e-96 357.1 800 42.6
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 4.3e-96 356.7 777 47.5
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.7e-95 354.8 798 43.6
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 4.1e-94 350.1 773 42.4
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 1.5e-93 348.2 789 42.1
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.3e-92 345.1 788 41.9
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.3e-92 345.1 788 41.9
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 3.8e-92 343.6 636 44.5
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 3.8e-92 343.6 754 44.6
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 6.5e-92 342.8 791 42.1
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.6e-90 338.2 758 45.9
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 2.3e-89 334.3 611 49.1
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 3.0e-89 334.0 784 44.9
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 8.8e-89 332.4 778 44.3
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 2.8e-87 327.4 771 44.9
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 5.9e-85 319.7 773 40.1
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 5.5e-83 313.2 758 48.0
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 9.4e-83 312.4 667 47.4
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 5.2e-81 306.6 694 42.4
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 6.7e-81 306.2 689 44.4
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 5.7e-80 303.1 772 44.9
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 2.2e-79 301.2 752 44.4
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 2.8e-79 300.8 773 38.2
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 7.0e-78 296.2 706 46.2
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 9.1e-78 295.8 756 37.6
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.0e-77 294.7 786 39.3
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 2.6e-77 294.3 777 44.0
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 7.7e-77 292.7 746 44.6
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 2.2e-76 291.2 644 47.4
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 6.5e-76 289.7 803 38.7
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 1.5e-75 288.5 806 34.9
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 3.0e-73 280.8 777 36.0
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 5.2e-73 280.0 657 42.3
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 1.2e-72 278.9 704 37.4
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 2.0e-72 278.1 706 41.1
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 1.3e-71 275.4 754 36.5
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.8e-70 271.6 692 39.7
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.6e-69 268.5 453 45.5
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.7e-69 267.7 739 44.8
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 3.5e-69 267.3 706 39.0
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.9e-69 266.5 774 36.4
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 7.7e-69 266.2 713 36.3
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 2.2e-68 264.6 672 43.2
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 2.2e-68 264.6 729 38.4
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 3.2e-67 260.8 729 43.2
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.1e-66 258.1 793 35.8
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 3.6e-66 257.3 743 40.6
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 3.6e-66 257.3 663 38.3
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 3.0e-65 254.2 743 36.9
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.2e-64 252.3 759 36.5
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 3.4e-64 250.8 821 39.5
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 2.2e-63 248.1 774 41.5
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.8e-63 247.7 770 40.3
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 2.8e-63 247.7 657 36.7
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.1e-62 245.7 254 59.4
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.4e-62 245.4 733 35.5
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 2.0e-61 241.5 750 36.9
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 2.7e-61 241.1 815 41.1
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 2.5e-59 234.6 721 37.7
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 5.5e-59 233.4 761 34.0
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 9.5e-59 232.6 793 35.1
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 6.1e-58 229.9 686 33.1
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 5.2e-57 226.9 721 42.0
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 5.2e-57 226.9 714 41.0
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 2.0e-56 224.9 703 36.6
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 2.6e-56 224.6 738 34.6
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 9.8e-56 222.6 805 33.0
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 1.3e-55 222.2 765 34.4
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.7e-55 221.9 767 35.1
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 3.7e-55 220.7 790 41.0
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 6.3e-55 219.9 726 40.5
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 7.0e-54 216.5 694 42.9
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.7e-53 214.5 723 39.8
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 4.5e-53 213.8 768 34.6
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 2.5e-51 208.0 134 79.9
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 3.3e-51 207.6 712 32.0
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 3.6e-50 204.1 327 50.5
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 4.7e-50 203.8 725 31.9
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 7.5e-48 196.4 628 36.5
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 2.0e-45 188.3 237 53.2
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 1.0e-44 186.0 710 31.1
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 2.3e-44 184.9 416 40.1
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 3.0e-44 184.5 510 40.6
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.1e-43 182.6 667 33.4
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 1.9e-43 181.8 659 32.2
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.3e-43 181.0 655 34.5
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 5.6e-43 180.3 672 34.7
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 7.3e-43 179.9 480 37.7
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 9.5e-43 179.5 650 34.8
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.6e-42 178.7 722 31.6
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.1e-42 178.3 663 36.2
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 2.0e-40 171.8 334 41.6
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 7.0e-38 163.3 749 32.6
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.5e-35 155.6 439 47.4
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.5e-35 155.6 205 48.3
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 4.3e-35 154.1 615 31.2
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 3.6e-34 151.0 647 31.2
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.1e-33 149.4 751 30.2
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 4.0e-33 147.5 457 38.9
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.2e-33 147.1 703 30.0
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 6.4e-31 140.2 718 30.5
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 7.3e-27 126.7 197 47.7
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 2.8e-26 124.8 451 37.3
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 6.2e-26 123.6 129 58.1
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.8e-25 122.1 833 26.5
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 4.4e-24 117.5 578 38.9
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 3.9e-20 104.4 553 28.2
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 9.6e-19 99.8 558 29.2
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 9.6e-19 99.8 558 29.2
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.2e-18 99.4 567 29.8
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 1.2e-18 99.4 551 35.2
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.1e-17 96.3 142 50.0
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 2.0e-16 92.0 546 31.9
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.2e-15 88.6 297 37.0
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 6.4e-15 87.0 601 28.0
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 1.1e-14 86.3 129 48.1
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.4e-14 85.1 212 36.8
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.2e-14 84.7 251 33.1
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 5.1e-12 77.4 175 40.0
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 1.1e-11 76.3 112 50.9
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 2.6e-08 65.1 588 32.1
Peaxi162Scf00036g00224 Petunia axillaris HOM05D002102 ORTHO05D004119 7.6e-08 63.5 88 51.1
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 9.9e-08 63.2 291 28.5
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.2e-07 62.0 117 41.0
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 4.9e-07 60.8 60 56.7
C03p77490 Brassica napus HOM05D011073 ORTHO05D013800 4.9e-07 60.8 111 48.6
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 3.2e-06 58.2 136 41.9
BraA02t06724Z Brassica rapa HOM05D011073 ORTHO05D013800 4.2e-06 57.8 109 47.7


User provided reference genes

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