Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G140900 Populus trichocarpa HOM05D006594 ORTHO05D008383 6.1e-269 930.2 475 100.0
Sabra15G0151500 Salix brachista HOM05D006594 ORTHO05D008383 1.7e-250 869.0 471 93.4
Manes.14G027600 Manihot esculenta HOM05D006594 ORTHO05D008383 8.2e-173 610.9 477 69.2
Ciclev10004900m.g Citrus clementina HOM05D006594 ORTHO05D008383 7.2e-169 597.8 478 65.3
Duzib205G1849 Durio zibethinus HOM05D006594 ORTHO05D008383 6.1e-168 594.7 473 65.8
COL.COLO4_14285 Corchorus olitorius HOM05D006594 ORTHO05D008383 6.3e-165 584.7 468 65.4
TWI23G0502 Tripterygium wilfordii HOM05D006594 ORTHO05D008383 1.2e-160 570.5 474 62.9
Cfa008301 Carpinus fangiana HOM05D006594 ORTHO05D008383 3.0e-159 565.8 474 62.9
Manes.06G145800 Manihot esculenta HOM05D006594 ORTHO05D008383 1.8e-156 556.6 477 62.9
CiPaw.03G104400 Carya illinoinensis HOM05D006594 ORTHO05D008383 5.5e-153 545.0 474 62.0
Gohir.D12G260500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 1.2e-152 543.9 477 61.0
Gorai.008G279100 Gossypium raimondii HOM05D006594 ORTHO05D008383 8.0e-152 541.2 475 61.1
Prupe.2G292200 Prunus persica HOM05D006594 ORTHO05D008383 4.9e-149 531.9 476 59.9
QL09p014600 Quercus lobata HOM05D006594 ORTHO05D008383 1.1e-148 530.8 477 60.0
Thhalv10013484m.g Eutrema salsugineum HOM05D006594 ORTHO05D008383 3.5e-147 525.8 474 58.4
Sp6g14430 Schrenkiella parvula HOM05D006594 ORTHO05D008383 1.3e-146 523.9 474 57.8
Aa31LG3G8560 Aethionema arabicum HOM05D006594 ORTHO05D008383 9.5e-145 517.7 474 57.4
Eucgr.K00239 Eucalyptus grandis HOM05D006594 ORTHO05D008383 3.6e-144 515.8 484 57.4
CARHR265100 Cardamine hirsuta HOM05D006594 ORTHO05D008383 4.7e-144 515.4 474 55.9
AT5G52180 Arabidopsis thaliana HOM05D006594 ORTHO05D008383 8.0e-144 514.6 476 57.1
Carub.0008s1227 Capsella rubella HOM05D006594 ORTHO05D008383 1.2e-142 510.8 474 56.5
BcaC04g20605 Brassica carinata HOM05D006594 ORTHO05D008383 3.7e-141 505.8 474 57.2
C09p41600 Brassica napus HOM05D006594 ORTHO05D008383 3.7e-141 505.8 474 57.2
BolC9t57044H Brassica oleracea HOM05D006594 ORTHO05D008383 3.7e-141 505.8 474 57.2
RcHm_v2.0_Chr1g0376971 Rosa chinensis HOM05D006594 ORTHO05D008383 6.4e-141 505.0 475 58.3
MELO3C006892.2 Cucumis melo HOM05D006594 ORTHO05D008383 1.1e-140 504.2 481 56.1
CsaV3_3G016960 Cucumis sativus L. HOM05D006594 ORTHO05D008383 1.8e-140 503.4 475 56.0
ClCG05G007930 Citrullus lanatus HOM05D006594 ORTHO05D008383 2.4e-140 503.1 472 55.3
BcaB08g35566 Brassica carinata HOM05D006594 ORTHO05D008383 5.4e-140 501.9 475 57.7
AL8G26560 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 7.0e-140 501.5 474 55.5
Haze_13736 Corylus avellana HOM05D006594 ORTHO05D008383 9.2e-140 501.1 472 57.6
THA.LOC104825095 Tarenaya hassleriana HOM05D006594 ORTHO05D008383 1.2e-139 500.7 475 55.6
MD07G1266600 Malus domestica HOM05D006594 ORTHO05D008383 4.6e-139 498.8 478 55.9
Ca_10784_v3 Cicer arietinum L. HOM05D006594 ORTHO05D008383 2.3e-138 496.5 476 56.9
A10p09870 Brassica napus HOM05D006594 ORTHO05D008383 3.0e-138 496.1 474 56.1
Cc02_g03190 Coffea canephora HOM05D006594 ORTHO05D008383 1.1e-137 494.2 469 56.3
BraA10t43068Z Brassica rapa HOM05D006594 ORTHO05D008383 1.5e-137 493.8 474 55.9
CSS0002088 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 1.9e-137 493.4 466 56.7
CSS0024482 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 9.5e-137 491.1 466 56.4
Hma1.2p1_1323F.1_g275590 Hydrangea macrophylla HOM05D006594 ORTHO05D008383 4.0e-135 485.7 465 55.9
PSO782G0556 Papaver somniferum HOM05D006594 ORTHO05D008383 3.4e-134 482.6 472 55.5
LjContig00238g0014067 Lotus japonicus HOM05D006594 ORTHO05D008383 1.1e-132 477.6 475 54.9
PGR142G0281 Punica granatum HOM05D006594 ORTHO05D008383 4.1e-132 475.7 475 55.6
Phvul.007G067900 Phaseolus vulgaris HOM05D006594 ORTHO05D008383 5.4e-132 475.3 475 55.4
FAN10G1161 Fragaria x ananassa HOM05D006594 ORTHO05D008383 2.8e-128 463.0 480 53.3
Lsat_1_v5_gn_0_29900 Lactuca sativa HOM05D006594 ORTHO05D008383 1.4e-127 460.7 468 53.2
Sed0005391 Sechium edule HOM05D006594 ORTHO05D008383 1.4e-127 460.7 426 56.1
FAN06G4553 Fragaria x ananassa HOM05D006594 ORTHO05D008383 5.2e-127 458.8 482 53.3
FAN06G0009 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.2e-126 457.6 482 53.1
Sc19g0001600 Simmondsia chinensis HOM05D006594 ORTHO05D008383 2.6e-126 456.4 471 52.4
FAN01G0792 Fragaria x ananassa HOM05D006594 ORTHO05D008383 4.9e-125 452.2 468 53.6
Medtr1g100767 Medicago truncatula HOM05D006594 ORTHO05D008383 4.9e-125 452.2 476 53.6
Glyma.10G237700 Glycine max HOM05D006594 ORTHO05D008383 8.3e-125 451.4 478 54.2
Aqoxy7G00398 Aquilegia oxysepala HOM05D006594 ORTHO05D008383 1.1e-124 451.1 479 51.4
Peaxi162Scf00915g00007 Petunia axillaris HOM05D006594 ORTHO05D008383 1.4e-124 450.7 465 52.9
Psat6g200680 Pisum sativum HOM05D006594 ORTHO05D008383 1.4e-124 450.7 475 54.1
Glyma.20G156900 Glycine max HOM05D006594 ORTHO05D008383 4.1e-124 449.1 476 54.4
MSTRG.8446 Avicennia marina HOM05D006594 ORTHO05D008383 3.5e-123 446.0 466 50.6
Lalb_Chr06g0161051 Lupinus albus HOM05D006594 ORTHO05D008383 4.6e-123 445.7 479 52.0
PSO478G3258 Papaver somniferum HOM05D006594 ORTHO05D008383 7.8e-123 444.9 445 54.2
HanXRQChr09g0253731 Helianthus annuus HOM05D006594 ORTHO05D008383 1.1e-119 434.5 480 51.5
Oeu022583.1 Olea europaea HOM05D006594 ORTHO05D008383 5.2e-119 432.2 466 49.4
FAN03G3172 Fragaria x ananassa HOM05D006594 ORTHO05D008383 2.0e-118 430.3 445 53.9
Gohir.A12G259700 Gossypium hirsutum HOM05D006594 ORTHO05D008383 2.0e-118 430.3 380 60.0
SGA_v2.0_scaffold113G31757 Striga asiatica HOM05D006594 ORTHO05D008383 7.6e-118 428.3 466 49.8
DCAR_009355 Daucus carota HOM05D006594 ORTHO05D008383 3.8e-117 426.0 474 50.6
Solyc03g026010.3 Solanum lycopersicum HOM05D006594 ORTHO05D008383 9.2e-116 421.4 464 48.3
Sopen03g004840 Solanum pennellii HOM05D006594 ORTHO05D008383 6.0e-115 418.7 464 48.1
PGSC0003DMG400014324 Solanum tuberosum HOM05D006594 ORTHO05D008383 7.8e-115 418.3 464 48.5
CAN.G856.1 Capsicum annuum HOM05D006594 ORTHO05D008383 1.0e-114 417.9 464 48.3
TAR374G1009 Trochodendron aralioides HOM05D006594 ORTHO05D008383 1.9e-113 413.7 355 60.3
Actinidia32874 Actinidia chinensis HOM05D006594 ORTHO05D008383 1.6e-112 410.6 409 53.1
Migut.F01134 Erythranthe guttata HOM05D006594 ORTHO05D008383 6.9e-111 405.2 466 47.9
GSVIVG01010594001 Vitis vinifera HOM05D006594 ORTHO05D008383 3.4e-110 402.9 467 50.5
TPR.G14337 Trifolium pratense HOM05D006594 ORTHO05D008383 4.4e-110 402.5 458 50.4
Dinv28461 Davidia involucrata HOM05D006594 ORTHO05D008383 4.9e-109 399.1 434 51.2
Ah.13g068460 Amaranthus hybridus HOM05D006594 ORTHO05D008383 1.9e-108 397.1 473 48.0
vmacro06700 Vaccinium macrocarpon HOM05D006594 ORTHO05D008383 1.9e-108 397.1 429 51.7
SalBow2G3298 Salvia bowleyana HOM05D006594 ORTHO05D008383 4.6e-107 392.5 477 45.7
AUR62021215 Chenopodium quinoa HOM05D006594 ORTHO05D008383 1.0e-106 391.3 416 50.7
CDE11G0822 Ceratophyllum demersum HOM05D006594 ORTHO05D008383 2.3e-106 390.2 463 45.8
MBI12_g14429_MAGBIO Magnolia biondii HOM05D006594 ORTHO05D008383 2.5e-105 386.7 414 53.4
Rhsim03G0179000 Rhododendron simsii HOM05D006594 ORTHO05D008383 2.5e-105 386.7 421 51.3
arahy.Tifrunner.gnm1.ann1.GIF0V2 Arachis hypogaea HOM05D006594 ORTHO05D008383 9.6e-105 384.8 413 50.8
arahy.Tifrunner.gnm1.ann1.MGJ2V1 Arachis hypogaea HOM05D006594 ORTHO05D008383 1.6e-104 384.0 452 48.7
Gorai.004G119800 Gossypium raimondii HOM05D006594 ORTHO05D008383 2.5e-97 360.1 474 49.4
ATR0757G038 Amborella trichopoda HOM05D006594 ORTHO05D008383 4.2e-92 342.8 606 36.8
Gohir.A08G100500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 5.5e-92 342.4 363 55.4
Thecc.03G173100 Theobroma cacao HOM05D006594 ORTHO05D008383 4.3e-89 332.8 264 67.4
AUR62016008 Chenopodium quinoa HOM05D006594 ORTHO05D008383 4.6e-83 312.8 438 42.7
A06p20700 Brassica napus HOM05D006594 ORTHO05D008383 8.2e-80 302.0 238 62.2
Gohir.D08G112040 Gossypium hirsutum HOM05D006594 ORTHO05D008383 5.1e-74 282.7 460 43.7
FvH4_7g29210 Fragaria vesca HOM05D006594 ORTHO05D008383 6.9e-71 272.3 343 48.7
Nitab4.5_0001508g0080 Nicotiana tabacum HOM05D006594 ORTHO05D008383 3.8e-69 266.5 238 54.2
unitig_0.g463 Utricularia gibba HOM05D006594 ORTHO05D008383 1.4e-63 248.1 264 48.5
SEGI_30493 Sequoiadendron giganteum HOM05D006594 ORTHO05D008383 3.8e-61 240.0 522 32.4
Lj1P995T25 Lonicera japonica HOM05D006594 ORTHO05D008383 1.2e-46 191.8 142 66.2
SMO116G0206 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 3.7e-40 170.2 479 29.0
Nitab4.5_0000716g0260 Nicotiana tabacum HOM05D006594 ORTHO05D008383 2.4e-39 167.5 317 36.0
Zm00001eb378500 Zea mays HOM05D006594 ORTHO05D008383 2.8e-35 154.1 464 30.8
Mapoly0061s0021 Marchantia polymorpha HOM05D006594 ORTHO05D008383 1.0e-34 152.1 518 26.1
MD01G1198800 Malus domestica HOM05D006594 ORTHO05D008383 1.5e-33 148.3 474 27.6
AL1G10170 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 5.4e-31 139.8 122 59.0
arahy.Tifrunner.gnm1.ann1.J8117K Arachis hypogaea HOM05D006594 ORTHO05D008383 2.0e-30 137.9 215 39.5
Duzib068G0509 Durio zibethinus HOM05D006594 ORTHO05D008383 6.6e-29 132.9 179 49.2
arahy.Tifrunner.gnm1.ann1.A65ZGP Arachis hypogaea HOM05D006594 ORTHO05D008383 1.9e-28 131.3 180 43.9
Os06g0129000 Oryza sativa ssp. japonica HOM05D006594 ORTHO05D008383 5.6e-28 129.8 464 29.3
arahy.Tifrunner.gnm1.ann1.PB1XHH Arachis hypogaea HOM05D006594 ORTHO05D008383 2.0e-25 121.3 303 32.7
Atru.chr1.484 Acer truncatum HOM05D006594 ORTHO05D008383 6.4e-24 116.3 121 58.7
Lj1E995T0 Lonicera japonica HOM05D006594 ORTHO05D008383 4.3e-20 103.6 142 45.8
unitig_0.g462 Utricularia gibba HOM05D006594 ORTHO05D008383 2.1e-19 101.3 150 40.7
VMungo0331G1728 Vigna mungo HOM05D006594 ORTHO05D008383 6.8e-18 96.3 112 50.0
EL10Ac3g05712 Beta vulgaris HOM05D006594 ORTHO05D008383 1.5e-17 95.1 112 52.7
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 1.1e-12 79.0 120 35.8
SMO195G0056 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 3.4e-09 67.4 121 33.1


User provided reference genes

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