Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.1e-31 138.3 63 100.0
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 6.5e-17 90.1 51 80.4
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 3.2e-16 87.8 51 70.6
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 5.5e-16 87.0 51 70.6
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 1.9e-13 78.6 49 69.4
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.3e-13 77.8 51 64.7
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 3.3e-13 77.8 51 66.7
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.3e-13 77.8 51 64.7
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 4.3e-13 77.4 51 66.7
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 5.7e-13 77.0 51 66.7
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 5.7e-13 77.0 51 64.7
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 7.4e-13 76.6 53 64.2
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 7.4e-13 76.6 51 66.7
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 7.4e-13 76.6 53 62.3
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 9.7e-13 76.3 51 66.7
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 9.7e-13 76.3 49 67.3
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.3e-12 75.9 51 66.7
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 1.6e-12 75.5 51 64.7
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 2.2e-12 75.1 51 64.7
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.8e-12 74.7 51 62.7
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 2.8e-12 74.7 53 64.2
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 2.8e-12 74.7 51 64.7
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 3.7e-12 74.3 54 59.3
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 3.7e-12 74.3 51 62.7
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 3.7e-12 74.3 48 66.7
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 3.7e-12 74.3 51 64.7
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 3.7e-12 74.3 51 64.7
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.7e-12 74.3 51 62.7
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 3.7e-12 74.3 51 62.7
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 3.7e-12 74.3 51 62.7
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 4.8e-12 73.9 51 62.7
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 6.3e-12 73.6 54 57.4
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 6.3e-12 73.6 51 62.7
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 6.3e-12 73.6 51 64.7
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 8.2e-12 73.2 51 62.7
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 8.2e-12 73.2 51 60.8
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 8.2e-12 73.2 53 62.3
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 8.2e-12 73.2 51 60.8
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 1.1e-11 72.8 51 64.7
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.1e-11 72.8 51 60.8
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 1.1e-11 72.8 51 60.8
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 1.1e-11 72.8 51 60.8
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 1.4e-11 72.4 51 62.7
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.8e-11 72.0 51 62.7
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.8e-11 72.0 51 62.7
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.8e-11 72.0 51 62.7
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 1.8e-11 72.0 51 62.7
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.4e-11 71.6 51 62.7
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 2.4e-11 71.6 51 58.8
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.4e-11 71.6 51 60.8
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 2.4e-11 71.6 51 60.8
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 2.4e-11 71.6 51 60.8
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 2.4e-11 71.6 51 60.8
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 2.4e-11 71.6 51 58.8
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 3.1e-11 71.2 51 60.8
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 3.1e-11 71.2 51 60.8
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.1e-11 71.2 51 60.8
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.1e-11 71.2 51 60.8
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 3.1e-11 71.2 51 64.7
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 4.1e-11 70.9 51 56.9
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 4.1e-11 70.9 51 60.8
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 4.1e-11 70.9 51 62.7
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 5.3e-11 70.5 51 58.8
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 6.9e-11 70.1 51 58.8
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 6.9e-11 70.1 53 58.5
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 6.9e-11 70.1 51 56.9
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 9.1e-11 69.7 51 56.9
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 9.1e-11 69.7 51 54.9
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 9.1e-11 69.7 49 63.3
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.2e-10 69.3 51 56.9
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 1.2e-10 69.3 51 56.9
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 1.2e-10 69.3 51 56.9
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 1.2e-10 69.3 51 58.8
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.2e-10 69.3 49 63.3
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.5e-10 68.9 51 58.8
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.5e-10 68.9 51 56.9
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 1.5e-10 68.9 51 56.9
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.5e-10 68.9 49 61.2
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 2.0e-10 68.6 49 61.2
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 2.0e-10 68.6 51 56.9
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 2.6e-10 68.2 51 58.8
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 2.6e-10 68.2 51 56.9
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.6e-10 68.2 51 60.8
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 3.4e-10 67.8 51 56.9
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 3.4e-10 67.8 51 54.9
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 4.5e-10 67.4 51 54.9
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 4.5e-10 67.4 51 56.9
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 4.5e-10 67.4 49 59.2
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 5.9e-10 67.0 51 54.9
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 5.9e-10 67.0 55 54.5
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 7.7e-10 66.6 47 61.7
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 7.7e-10 66.6 51 58.8
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.0e-09 66.2 49 57.1
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 1.0e-09 66.2 49 57.1
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 1.3e-09 65.9 51 54.9
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 1.3e-09 65.9 50 60.0
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 1.7e-09 65.5 51 56.9
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 1.7e-09 65.5 54 51.9
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 6.5e-09 63.5 51 51.0
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 8.5e-09 63.2 51 54.9
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 1.4e-08 62.4 53 50.9
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 1.9e-08 62.0 50 52.0
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 7.2e-08 60.1 49 49.0
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 9.4e-08 59.7 49 53.1
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 9.4e-08 59.7 53 45.3
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 1.2e-07 59.3 52 55.8
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 1.2e-07 59.3 49 51.0
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 1.2e-07 59.3 49 51.0
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 1.6e-07 58.9 49 51.0
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 2.1e-07 58.5 49 51.0
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 3.6e-07 57.8 49 51.0
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 4.6e-07 57.4 49 51.0
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 4.6e-07 57.4 49 51.0
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 7.9e-07 56.6 42 54.8
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 1.0e-06 56.2 49 51.0
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 1.0e-06 56.2 39 61.5
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 1.0e-06 56.2 49 51.0
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 1.0e-06 56.2 49 51.0
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 1.0e-06 56.2 39 61.5
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 2.3e-06 55.1 38 63.2
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 3.0e-06 54.7 38 63.2
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 3.9e-06 54.3 51 45.1
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 3.9e-06 54.3 39 59.0
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 8.8e-06 53.1 37 62.2
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 8.8e-06 53.1 38 55.3


User provided reference genes

Program Settings