Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G118850 Populus trichocarpa HOM05D003794 ORTHO05D004464 3.5e-73 278.1 133 100.0
Potri.015G118900 Populus trichocarpa HOM05D003794 ORTHO05D004464 3.5e-73 278.1 133 100.0
Potri.015G119100 Populus trichocarpa HOM05D003794 ORTHO05D004464 5.9e-52 207.6 134 77.6
Potri.015G118800 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.1e-42 176.8 129 63.6
Potri.015G120000 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.1e-39 166.8 126 61.9
Potri.015G120200 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.9e-18 96.3 108 44.4
Haze_06027 Corylus avellana HOM05D003794 ORTHO05D004464 4.2e-18 95.1 109 45.9
Haze_06028 Corylus avellana HOM05D003794 ORTHO05D004464 4.2e-18 95.1 109 45.9
Potri.015G120100 Populus trichocarpa HOM05D003794 ORTHO05D004464 2.1e-17 92.8 107 43.9
ClCG01G009280 Citrullus lanatus HOM05D003794 ORTHO05D004464 4.7e-17 91.7 112 43.8
PGR042G1704 Punica granatum HOM05D003794 ORTHO05D004464 4.7e-17 91.7 105 45.7
Potri.012G120280 Populus trichocarpa HOM05D003794 ORTHO05D004464 6.1e-17 91.3 108 45.4
QL11p018066 Quercus lobata HOM05D003794 ORTHO05D004464 1.0e-16 90.5 116 41.4
Ciclev10016974m.g Citrus clementina HOM05D003794 ORTHO05D004464 3.0e-16 89.0 106 44.3
CsaV3_1G046610 Cucumis sativus L. HOM05D003794 ORTHO05D004464 3.0e-16 89.0 116 41.4
Potri.012G120160 Populus trichocarpa HOM05D003794 ORTHO05D004464 3.0e-16 89.0 106 43.4
Sabra15G0137100 Salix brachista HOM05D003794 ORTHO05D004464 3.0e-16 89.0 104 43.3
Lj1A1144T44 Lonicera japonica HOM05D003794 ORTHO05D004464 8.9e-16 87.4 105 40.0
CANSAT35G2022 Cannabis sativa HOM05D003794 ORTHO05D004464 1.2e-15 87.0 106 43.4
CiPaw.09G078700 Carya illinoinensis HOM05D003794 ORTHO05D004464 1.5e-15 86.7 100 44.0
Sabra12G0088800 Salix brachista HOM05D003794 ORTHO05D004464 1.5e-15 86.7 108 42.6
GSVIVG01012092001 Vitis vinifera HOM05D003794 ORTHO05D004464 2.0e-15 86.3 103 43.7
Sed0012046 Sechium edule HOM05D003794 ORTHO05D004464 2.6e-15 85.9 102 41.2
Dinv05961 Davidia involucrata HOM05D003794 ORTHO05D004464 3.4e-15 85.5 101 47.5
Sed0014796 Sechium edule HOM05D003794 ORTHO05D004464 3.4e-15 85.5 107 43.9
Sed0015410 Sechium edule HOM05D003794 ORTHO05D004464 4.4e-15 85.1 102 40.2
Sabra06G0010100 Salix brachista HOM05D003794 ORTHO05D004464 5.7e-15 84.7 107 43.9
Gohir.A06G140900 Gossypium hirsutum HOM05D003794 ORTHO05D004464 7.5e-15 84.3 106 42.5
Sabra15G0137000 Salix brachista HOM05D003794 ORTHO05D004464 7.5e-15 84.3 107 43.0
Gohir.D06G145100 Gossypium hirsutum HOM05D003794 ORTHO05D004464 9.8e-15 84.0 100 45.0
Gorai.010G168800 Gossypium raimondii HOM05D003794 ORTHO05D004464 9.8e-15 84.0 100 45.0
Manes.16G059600 Manihot esculenta HOM05D003794 ORTHO05D004464 1.3e-14 83.6 111 42.3
GSVIVG01012087001 Vitis vinifera HOM05D003794 ORTHO05D004464 1.3e-14 83.6 103 41.7
CsaV3_1G046430 Cucumis sativus L. HOM05D003794 ORTHO05D004464 1.7e-14 83.2 108 40.7
TWI38G0727 Tripterygium wilfordii HOM05D003794 ORTHO05D004464 1.7e-14 83.2 109 44.0
ClCG01G009290 Citrullus lanatus HOM05D003794 ORTHO05D004464 2.2e-14 82.8 102 38.2
MELO3C021767.2 Cucumis melo HOM05D003794 ORTHO05D004464 2.8e-14 82.4 121 40.5
Atru.chr10.446 Acer truncatum HOM05D003794 ORTHO05D004464 3.7e-14 82.0 107 41.1
Gohir.A09G025201 Gossypium hirsutum HOM05D003794 ORTHO05D004464 3.7e-14 82.0 102 40.2
Thecc.06G141300 Theobroma cacao HOM05D003794 ORTHO05D004464 3.7e-14 82.0 100 44.0
Psat1g023680 Pisum sativum HOM05D003794 ORTHO05D004464 4.9e-14 81.6 103 45.6
Gohir.D09G024500 Gossypium hirsutum HOM05D003794 ORTHO05D004464 6.3e-14 81.3 108 38.0
Sabra12G0088700 Salix brachista HOM05D003794 ORTHO05D004464 6.3e-14 81.3 104 44.2
Sabra12G0091800 Salix brachista HOM05D003794 ORTHO05D004464 6.3e-14 81.3 104 44.2
COL.COLO4_30982 Corchorus olitorius HOM05D003794 ORTHO05D004464 8.3e-14 80.9 101 43.6
GSVIVG01012089001 Vitis vinifera HOM05D003794 ORTHO05D004464 8.3e-14 80.9 105 40.0
Duzib160G0344 Durio zibethinus HOM05D003794 ORTHO05D004464 1.1e-13 80.5 107 42.1
Cc09_g06260 Coffea canephora HOM05D003794 ORTHO05D004464 1.8e-13 79.7 105 38.1
Medtr0026s0010 Medicago truncatula HOM05D003794 ORTHO05D004464 1.8e-13 79.7 104 47.1
MD05G1254300 Malus domestica HOM05D003794 ORTHO05D004464 2.4e-13 79.3 106 37.7
Aa31LG9G16050 Aethionema arabicum HOM05D003794 ORTHO05D004464 3.2e-13 79.0 115 40.0
ClCG01G009250 Citrullus lanatus HOM05D003794 ORTHO05D004464 3.2e-13 79.0 107 40.2
Cc09_g06270 Coffea canephora HOM05D003794 ORTHO05D004464 3.2e-13 79.0 101 42.6
Cpa.g.sc135.26 Carica papaya HOM05D003794 ORTHO05D004464 4.1e-13 78.6 109 42.2
Duzib235G0411 Durio zibethinus HOM05D003794 ORTHO05D004464 4.1e-13 78.6 102 41.2
Migut.M01972 Erythranthe guttata HOM05D003794 ORTHO05D004464 4.1e-13 78.6 102 40.2
ClCG01G009270 Citrullus lanatus HOM05D003794 ORTHO05D004464 5.4e-13 78.2 108 40.7
CsaV3_1G046440 Cucumis sativus L. HOM05D003794 ORTHO05D004464 5.4e-13 78.2 105 42.9
BcaB07g32782 Brassica carinata HOM05D003794 ORTHO05D004464 7.0e-13 77.8 106 41.5
Cfa000722 Carpinus fangiana HOM05D003794 ORTHO05D004464 7.0e-13 77.8 111 41.4
ClCG01G009260 Citrullus lanatus HOM05D003794 ORTHO05D004464 7.0e-13 77.8 107 41.1
MELO3C021763.2 Cucumis melo HOM05D003794 ORTHO05D004464 7.0e-13 77.8 105 41.0
Gorai.006G028700 Gossypium raimondii HOM05D003794 ORTHO05D004464 7.0e-13 77.8 102 38.2
PSO675G7591 Papaver somniferum HOM05D003794 ORTHO05D004464 7.0e-13 77.8 101 42.6
Thecc.06G140300 Theobroma cacao HOM05D003794 ORTHO05D004464 7.0e-13 77.8 103 42.7
Aqoxy4G00780 Aquilegia oxysepala HOM05D003794 ORTHO05D004464 9.2e-13 77.4 110 38.2
Sed0013970 Sechium edule HOM05D003794 ORTHO05D004464 9.2e-13 77.4 107 40.2
CSS0016108 Camellia sinensis var. sinensis HOM05D003794 ORTHO05D004464 1.2e-12 77.0 105 39.0
MELO3C021768.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.2e-12 77.0 105 35.2
MD10G1234400 Malus domestica HOM05D003794 ORTHO05D004464 1.2e-12 77.0 101 38.6
Prupe.4G110400 Prunus persica HOM05D003794 ORTHO05D004464 1.2e-12 77.0 108 39.8
RcHm_v2.0_Chr5g0019931 Rosa chinensis HOM05D003794 ORTHO05D004464 1.2e-12 77.0 108 39.8
Sed0017866 Sechium edule HOM05D003794 ORTHO05D004464 1.6e-12 76.6 103 40.8
arahy.Tifrunner.gnm1.ann1.D9MA0I Arachis hypogaea HOM05D003794 ORTHO05D004464 2.0e-12 76.3 100 42.0
CsaV3_6G053030 Cucumis sativus L. HOM05D003794 ORTHO05D004464 2.0e-12 76.3 104 40.4
FAN16G1323 Fragaria x ananassa HOM05D003794 ORTHO05D004464 2.0e-12 76.3 97 43.3
Oeu050060.1 Olea europaea HOM05D003794 ORTHO05D004464 2.0e-12 76.3 101 39.6
Sp1g27020 Schrenkiella parvula HOM05D003794 ORTHO05D004464 2.0e-12 76.3 109 40.4
ClCG01G025820 Citrullus lanatus HOM05D003794 ORTHO05D004464 4.5e-12 75.1 104 39.4
FAN25G3487 Fragaria x ananassa HOM05D003794 ORTHO05D004464 4.5e-12 75.1 100 41.0
AT1G31200 Arabidopsis thaliana HOM05D003794 ORTHO05D004464 5.9e-12 74.7 113 38.9
arahy.Tifrunner.gnm1.ann1.I4JYF5 Arachis hypogaea HOM05D003794 ORTHO05D004464 5.9e-12 74.7 101 41.6
CARHR030680 Cardamine hirsuta HOM05D003794 ORTHO05D004464 7.8e-12 74.3 113 40.7
Thhalv10009870m.g Eutrema salsugineum HOM05D003794 ORTHO05D004464 7.8e-12 74.3 109 41.3
Hma1.2p1_0040F.1_g025090 Hydrangea macrophylla HOM05D003794 ORTHO05D004464 7.8e-12 74.3 108 37.0
THA.LOC104814363 Tarenaya hassleriana HOM05D003794 ORTHO05D004464 7.8e-12 74.3 110 39.1
BcaC05g27150 Brassica carinata HOM05D003794 ORTHO05D004464 1.0e-11 73.9 106 39.6
C05p30370 Brassica napus HOM05D003794 ORTHO05D004464 1.0e-11 73.9 106 39.6
Phvul.009G205500 Phaseolus vulgaris HOM05D003794 ORTHO05D004464 1.0e-11 73.9 107 41.1
VMungo1309G0946 Vigna mungo HOM05D003794 ORTHO05D004464 1.0e-11 73.9 107 39.3
MSTRG.7585 Avicennia marina HOM05D003794 ORTHO05D004464 1.3e-11 73.6 109 34.9
Cpa.g.sc135.30 Carica papaya HOM05D003794 ORTHO05D004464 1.3e-11 73.6 116 37.9
Lj6g0000845 Lotus japonicus HOM05D003794 ORTHO05D004464 1.3e-11 73.6 106 41.5
PSO675G9055 Papaver somniferum HOM05D003794 ORTHO05D004464 1.3e-11 73.6 101 40.6
Phvul.009G205600 Phaseolus vulgaris HOM05D003794 ORTHO05D004464 1.3e-11 73.6 107 40.2
Sp1g08790 Schrenkiella parvula HOM05D003794 ORTHO05D004464 1.3e-11 73.6 114 43.0
Sed0022492 Sechium edule HOM05D003794 ORTHO05D004464 1.3e-11 73.6 104 38.5
Thhalv10008847m.g Eutrema salsugineum HOM05D003794 ORTHO05D004464 1.7e-11 73.2 116 41.4
Carub.0001s0957 Capsella rubella HOM05D003794 ORTHO05D004464 2.3e-11 72.8 114 40.4
Aa31LG2G15150 Aethionema arabicum HOM05D003794 ORTHO05D004464 2.9e-11 72.4 107 38.3
Carub.0001s2960 Capsella rubella HOM05D003794 ORTHO05D004464 2.9e-11 72.4 113 37.2
CsaV3_1G046600 Cucumis sativus L. HOM05D003794 ORTHO05D004464 2.9e-11 72.4 106 34.0
Potri.012G120340 Populus trichocarpa HOM05D003794 ORTHO05D004464 2.9e-11 72.4 99 38.4
Actinidia37906 Actinidia chinensis HOM05D003794 ORTHO05D004464 3.9e-11 72.0 101 40.6
AL1G49280 Arabidopsis lyrata HOM05D003794 ORTHO05D004464 3.9e-11 72.0 113 37.2
BcaC05g24803 Brassica carinata HOM05D003794 ORTHO05D004464 3.9e-11 72.0 114 40.4
Oeu008720.1 Olea europaea HOM05D003794 ORTHO05D004464 3.9e-11 72.0 100 41.0
AL1G20850 Arabidopsis lyrata HOM05D003794 ORTHO05D004464 5.0e-11 71.6 114 40.4
AT1G10155 Arabidopsis thaliana HOM05D003794 ORTHO05D004464 5.0e-11 71.6 114 41.2
FvH4_3g12160 Fragaria vesca HOM05D003794 ORTHO05D004464 5.0e-11 71.6 102 41.2
RcHm_v2.0_Chr5g0019921 Rosa chinensis HOM05D003794 ORTHO05D004464 6.6e-11 71.2 99 38.4
Aqoxy4G00782 Aquilegia oxysepala HOM05D003794 ORTHO05D004464 8.6e-11 70.9 104 40.4
A06p06810 Brassica napus HOM05D003794 ORTHO05D004464 8.6e-11 70.9 114 41.2
BraA06t23895Z Brassica rapa HOM05D003794 ORTHO05D004464 8.6e-11 70.9 114 41.2
Gohir.D03G117566 Gossypium hirsutum HOM05D003794 ORTHO05D004464 8.6e-11 70.9 97 37.1
BcaC05g24807 Brassica carinata HOM05D003794 ORTHO05D004464 1.1e-10 70.5 114 40.4
C05p08300 Brassica napus HOM05D003794 ORTHO05D004464 1.1e-10 70.5 114 40.4
BolC5t29580H Brassica oleracea HOM05D003794 ORTHO05D004464 1.1e-10 70.5 114 40.4
MELO3C007006.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.1e-10 70.5 102 38.2
Lalb_Chr11g0072291 Lupinus albus HOM05D003794 ORTHO05D004464 1.1e-10 70.5 108 38.9
Manes.16G059700 Manihot esculenta HOM05D003794 ORTHO05D004464 1.1e-10 70.5 102 40.2
RcHm_v2.0_Chr5g0019901 Rosa chinensis HOM05D003794 ORTHO05D004464 1.1e-10 70.5 104 38.5
Actinidia33654 Actinidia chinensis HOM05D003794 ORTHO05D004464 1.5e-10 70.1 106 38.7
BraA09t39035Z Brassica rapa HOM05D003794 ORTHO05D004464 1.9e-10 69.7 103 39.8
A09p35040 Brassica napus HOM05D003794 ORTHO05D004464 4.3e-10 68.6 103 38.8
PGSC0003DMG400010357 Solanum tuberosum HOM05D003794 ORTHO05D004464 4.3e-10 68.6 107 35.5
Glyma.06G221100 Glycine max HOM05D003794 ORTHO05D004464 5.6e-10 68.2 101 39.6
SalBow8G4157 Salvia bowleyana HOM05D003794 ORTHO05D004464 9.5e-10 67.4 101 39.6
TPR.G9537 Trifolium pratense HOM05D003794 ORTHO05D004464 1.2e-09 67.0 104 38.5
SalBow8G2459 Salvia bowleyana HOM05D003794 ORTHO05D004464 2.1e-09 66.2 101 40.6
CAN.G519.1 Capsicum annuum HOM05D003794 ORTHO05D004464 2.8e-09 65.9 107 33.6
Solyc02g069065.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 3.6e-09 65.5 105 33.3
Hma1.2p1_0502F.1_g167680 Hydrangea macrophylla HOM05D003794 ORTHO05D004464 4.7e-09 65.1 100 37.0
THA.LOC104798619 Tarenaya hassleriana HOM05D003794 ORTHO05D004464 4.7e-09 65.1 110 38.2
Migut.E01640 Erythranthe guttata HOM05D003794 ORTHO05D004464 8.0e-09 64.3 122 32.0
SalBow8G0239 Salvia bowleyana HOM05D003794 ORTHO05D004464 1.0e-08 63.9 110 32.7
SalBow8G3375 Salvia bowleyana HOM05D003794 ORTHO05D004464 1.0e-08 63.9 110 32.7
CAN.G519.2 Capsicum annuum HOM05D003794 ORTHO05D004464 1.4e-08 63.5 107 32.7
Migut.E00890 Erythranthe guttata HOM05D003794 ORTHO05D004464 1.4e-08 63.5 120 31.7
MBI18_g03837_MAGBIO Magnolia biondii HOM05D003794 ORTHO05D004464 1.4e-08 63.5 102 34.3
Hma1.2p1_2069F.1_g313120 Hydrangea macrophylla HOM05D003794 ORTHO05D004464 1.8e-08 63.2 100 36.0
MELO3C001310.2 Cucumis melo HOM05D003794 ORTHO05D004464 2.3e-08 62.8 77 44.2
Peaxi162Scf00367g00015 Petunia axillaris HOM05D003794 ORTHO05D004464 4.0e-08 62.0 99 37.4
Solyc02g069055.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 4.0e-08 62.0 98 33.7
Nitab4.5_0000767g0010 Nicotiana tabacum HOM05D003794 ORTHO05D004464 5.2e-08 61.6 103 35.0
BolC5t31776H Brassica oleracea HOM05D003794 ORTHO05D004464 8.9e-08 60.8 98 37.8
MD10G1234200 Malus domestica HOM05D003794 ORTHO05D004464 8.9e-08 60.8 89 36.0
Solyc02g069057.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 2.6e-07 59.3 98 32.7
Sopen02g018150 Solanum pennellii HOM05D003794 ORTHO05D004464 2.6e-07 59.3 105 31.4
Nitab4.5_0006444g0020 Nicotiana tabacum HOM05D003794 ORTHO05D004464 3.4e-07 58.9 109 32.1
Sopen02g018160 Solanum pennellii HOM05D003794 ORTHO05D004464 9.8e-07 57.4 98 32.7
Sopen02g010020 Solanum pennellii HOM05D003794 ORTHO05D004464 2.2e-06 56.2 106 31.1
Solyc02g031740.3 Solanum lycopersicum HOM05D003794 ORTHO05D004464 4.9e-06 55.1 106 31.1


User provided reference genes

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