Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.4e-259 899.0 447 100.0
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 4.5e-237 824.3 447 90.2
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 9.3e-227 790.0 447 86.8
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 2.5e-216 755.4 445 85.4
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 7.2e-211 737.3 447 80.5
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 1.4e-209 733.0 447 79.6
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 2.9e-204 715.3 449 78.6
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 3.8e-204 714.9 447 77.9
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 5.0e-204 714.5 448 76.8
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 8.5e-204 713.8 447 77.0
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 8.5e-204 713.8 447 78.3
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 1.4e-203 713.0 447 77.9
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 3.6e-202 708.4 445 77.5
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 3.0e-201 705.3 435 79.8
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 2.6e-200 702.2 446 76.2
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 3.4e-197 691.8 448 75.7
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.4e-195 686.4 450 75.3
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 1.9e-195 686.0 448 74.6
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 7.2e-195 684.1 444 75.7
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 4.7e-194 681.4 450 74.7
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.8e-193 679.5 444 76.1
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 2.3e-193 679.1 448 73.7
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.7e-191 671.8 448 74.6
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 3.7e-191 671.8 448 72.3
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.1e-190 670.2 448 74.6
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 1.4e-190 669.8 451 72.9
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 7.7e-189 664.1 448 73.9
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 2.2e-188 662.5 442 72.2
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 2.9e-188 662.1 451 71.8
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 3.8e-188 661.8 442 74.0
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 8.5e-188 660.6 449 71.5
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.1e-187 660.2 451 72.3
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 5.5e-187 657.9 451 72.1
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 4.7e-186 654.8 436 73.2
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 1.8e-185 652.9 419 78.5
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 1.4e-182 643.3 449 69.9
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 2.4e-182 642.5 441 70.1
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.2e-181 640.2 444 73.2
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 1.0e-180 637.1 447 70.5
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 6.5e-180 634.4 436 72.0
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 1.5e-179 633.3 448 69.9
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 2.5e-179 632.5 439 72.0
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 2.5e-179 632.5 435 72.2
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 2.5e-179 632.5 446 68.4
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 5.5e-179 631.3 434 71.2
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 9.4e-179 630.6 434 71.2
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.6e-178 629.8 440 70.0
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 2.1e-178 629.4 439 71.8
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 2.1e-178 629.4 449 69.5
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 6.1e-178 627.9 442 68.3
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 2.3e-177 625.9 448 69.9
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 4.0e-177 625.2 448 68.8
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 5.2e-177 624.8 448 69.2
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 5.2e-177 624.8 446 70.0
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 8.8e-177 624.0 448 69.2
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 1.3e-175 620.2 412 72.6
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 1.7e-175 619.8 448 68.5
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 2.2e-175 619.4 442 68.3
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 3.7e-175 618.6 448 68.8
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 8.3e-175 617.5 452 68.8
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 8.3e-175 617.5 448 69.0
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 1.8e-174 616.3 446 67.9
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 2.4e-174 615.9 433 68.4
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 1.2e-173 613.6 436 69.0
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 8.6e-172 607.4 436 69.3
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 4.2e-171 605.1 446 66.8
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 7.2e-171 604.4 425 69.6
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 2.1e-170 602.8 411 72.7
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.3e-169 599.4 452 68.6
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 4.0e-169 598.6 460 66.3
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 1.2e-168 597.0 434 70.0
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 1.2e-168 597.0 412 69.9
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.0e-168 596.3 452 68.4
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 2.0e-168 596.3 449 67.5
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 5.7e-168 594.7 448 65.8
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 1.3e-167 593.6 447 66.9
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 1.3e-167 593.6 447 66.9
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 7.0e-166 587.8 433 69.1
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 7.0e-166 587.8 436 65.4
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.3e-164 583.6 457 66.1
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 1.6e-162 576.6 434 67.1
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 2.1e-162 576.2 436 66.3
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 4.7e-162 575.1 437 68.0
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 1.4e-161 573.5 433 64.7
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 1.2e-160 570.5 472 64.0
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 2.0e-160 569.7 452 65.5
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 2.2e-159 566.2 455 64.8
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 2.2e-159 566.2 455 65.1
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 4.9e-159 565.1 442 65.8
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 1.1e-158 563.9 454 65.6
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 2.4e-158 562.8 431 65.4
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 4.1e-158 562.0 383 74.2
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 5.4e-158 561.6 451 64.1
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 2.0e-157 559.7 459 64.1
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.7e-157 559.3 350 76.9
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 6.0e-157 558.1 439 65.6
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 6.0e-157 558.1 439 65.6
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 3.3e-155 552.4 455 64.2
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 4.3e-155 552.0 452 65.3
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 4.3e-155 552.0 374 70.9
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 9.5e-155 550.8 455 65.3
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 1.2e-154 550.4 431 64.0
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 2.8e-154 549.3 446 65.5
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 2.8e-154 549.3 447 62.4
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 3.6e-154 548.9 450 65.1
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 3.6e-154 548.9 439 63.1
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 8.0e-154 547.7 445 64.7
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 1.8e-153 546.6 455 64.8
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 1.8e-153 546.6 455 64.8
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 2.3e-153 546.2 456 64.0
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 8.9e-153 544.3 453 64.0
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 1.5e-152 543.5 444 64.4
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 6.4e-151 538.1 349 75.4
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.1e-149 533.1 350 72.9
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 3.6e-146 522.3 447 60.0
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 3.6e-146 522.3 446 57.2
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 5.8e-144 515.0 427 59.3
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 7.5e-144 514.6 347 71.2
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 3.7e-143 512.3 368 69.8
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.4e-142 510.4 427 57.8
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 5.4e-142 508.4 409 60.9
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 8.6e-140 501.1 448 59.8
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 1.5e-136 490.3 319 75.2
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.3e-135 487.3 356 67.7
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 2.4e-121 439.9 370 63.2
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 5.3e-121 438.7 330 65.8
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 2.9e-119 433.0 447 52.8
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 5.8e-112 408.7 383 57.4
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 1.2e-109 401.0 316 65.5
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 1.2e-109 401.0 316 65.5
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 1.9e-94 350.5 387 49.4
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.4e-92 344.4 384 50.8
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 2.7e-85 320.1 243 67.1
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.8e-76 290.8 248 61.7
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 1.1e-73 281.6 190 72.1
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 1.5e-67 261.2 150 82.0
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.8e-65 254.2 333 46.2
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 2.6e-59 233.8 262 50.8
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 7.5e-59 232.3 164 68.3
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 9.5e-38 162.2 152 55.3
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 9.5e-38 162.2 106 72.6
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 7.1e-33 146.0 138 60.1
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 1.5e-30 138.3 110 69.1
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 1.6e-29 134.8 111 66.7
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 9.9e-27 125.6 99 55.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 1.2e-16 92.0 52 82.7
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 3.9e-07 60.5 54 53.7
Rhsim12G0214500 Rhododendron simsii HOM05D002895 ORTHO05D003286 5.6e-06 56.6 354 25.1


User provided reference genes

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