Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.3e-253 879.4 483 100.0
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 7.2e-217 757.3 482 87.3
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.9e-201 706.1 480 83.1
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 9.8e-190 667.2 479 77.2
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 4.5e-158 562.0 435 65.3
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 7.9e-155 551.2 435 66.4
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.0e-154 550.8 428 65.2
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 2.1e-152 543.1 481 61.1
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 2.6e-150 536.2 427 67.0
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 1.7e-149 533.5 430 64.2
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 1.4e-148 530.4 478 60.0
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 3.0e-146 522.7 473 57.7
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 9.6e-145 517.7 435 61.6
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 9.6e-145 517.7 431 59.6
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.3e-144 517.3 435 62.3
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 8.2e-144 514.6 435 62.3
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.1e-143 514.2 475 57.3
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 1.8e-143 513.5 435 60.5
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.4e-143 513.1 435 62.3
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 3.1e-143 512.7 402 65.2
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 5.8e-142 508.4 431 60.1
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.9e-141 506.1 475 55.8
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 6.5e-141 505.0 439 59.9
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 1.1e-140 504.2 469 55.0
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 4.2e-140 502.3 437 60.2
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 4.6e-139 498.8 429 61.3
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 3.9e-138 495.7 435 59.5
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 8.7e-138 494.6 435 57.2
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 8.7e-138 494.6 444 58.8
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.9e-137 493.4 477 54.3
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.5e-137 493.0 435 58.9
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.3e-137 492.3 435 59.5
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 7.4e-137 491.5 469 57.1
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 8.2e-136 488.0 432 59.3
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 1.1e-135 487.6 472 54.9
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 1.4e-135 487.3 438 58.7
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 4.1e-135 485.7 432 59.0
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 4.1e-135 485.7 432 58.3
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 9.0e-135 484.6 436 59.2
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.0e-134 483.4 432 58.8
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 1.3e-133 480.7 458 56.3
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 6.5e-133 478.4 435 57.7
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 3.2e-132 476.1 514 51.6
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 5.5e-132 475.3 468 53.6
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 7.2e-132 474.9 434 57.8
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 7.2e-132 474.9 445 55.1
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 2.1e-131 473.4 436 58.0
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 6.1e-131 471.9 433 58.2
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 1.0e-130 471.1 451 55.4
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 2.2e-128 463.4 470 50.9
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 2.8e-128 463.0 476 53.4
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 6.3e-128 461.8 515 48.9
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.8e-127 460.3 449 56.3
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.4e-127 459.9 474 51.7
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 4.1e-127 459.1 517 48.4
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 5.3e-127 458.8 470 51.1
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 2.0e-126 456.8 478 51.3
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 2.0e-126 456.8 423 55.1
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 3.4e-126 456.1 474 51.3
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 4.5e-126 455.7 431 59.4
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 1.3e-125 454.1 517 48.2
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 2.9e-125 453.0 455 52.3
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 8.5e-125 451.4 513 51.7
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 2.5e-124 449.9 441 55.1
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.2e-124 449.1 466 52.4
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 1.8e-122 443.7 430 54.4
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.5e-121 440.7 444 54.7
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 2.0e-121 440.3 437 54.7
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 7.4e-121 438.3 479 51.6
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 6.3e-120 435.3 560 48.0
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.4e-119 434.1 430 55.6
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 2.4e-119 433.3 430 55.8
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 3.1e-119 433.0 436 54.6
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 7.0e-119 431.8 364 60.4
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 7.0e-119 431.8 435 53.6
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 1.5e-118 430.6 451 52.8
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.5e-118 430.6 436 52.5
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.5e-118 430.6 432 50.9
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 2.6e-118 429.9 434 56.0
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.7e-117 427.2 471 51.4
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 6.5e-117 425.2 463 49.5
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 8.5e-117 424.9 436 53.9
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 1.4e-116 424.1 435 54.9
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.4e-116 424.1 437 50.8
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 5.5e-116 422.2 446 51.3
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 3.6e-115 419.5 448 51.3
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.3e-114 416.8 475 49.5
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 2.3e-114 416.8 473 50.1
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 6.7e-114 415.2 472 49.4
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 4.4e-113 412.5 466 48.5
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 7.4e-113 411.8 343 59.8
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 3.7e-112 409.5 398 54.8
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 3.7e-112 409.5 434 49.1
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 8.2e-112 408.3 435 52.2
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 4.5e-110 402.5 427 50.8
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 6.5e-109 398.7 454 46.9
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 6.5e-109 398.7 454 46.9
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.2e-107 394.4 451 46.6
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 4.7e-107 392.5 430 52.1
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 1.8e-106 390.6 435 51.0
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 1.8e-106 390.6 403 51.6
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.3e-106 390.2 265 67.2
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.2e-105 387.9 265 66.8
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 3.7e-104 382.9 446 46.0
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.4e-103 380.9 444 50.9
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 4.5e-102 375.9 448 48.2
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.3e-101 374.4 260 67.7
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 6.5e-101 372.1 443 46.7
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 3.2e-100 369.8 435 48.7
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 2.3e-98 363.6 264 62.9
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 2.0e-97 360.5 423 47.8
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 4.4e-97 359.4 434 48.4
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 1.3e-96 357.8 403 48.4
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 9.1e-95 351.7 430 45.6
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 3.5e-94 349.7 475 44.4
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 1.3e-93 347.8 430 46.0
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 1.5e-92 344.4 446 44.4
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 3.0e-90 336.7 245 62.0
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.8e-87 327.4 435 43.4
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 1.2e-86 324.7 195 75.4
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 5.9e-86 322.4 400 44.0
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 1.0e-85 321.6 434 44.7
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 1.9e-84 317.4 431 42.9
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.8e-83 313.5 211 67.3
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 9.2e-79 298.5 407 45.9
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 5.6e-76 289.3 484 36.8
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 4.7e-75 286.2 473 36.2
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 4.0e-74 283.1 474 36.3
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 4.0e-74 283.1 474 36.3
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 2.6e-73 280.4 259 49.8
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 5.8e-73 279.3 312 50.3
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 9.8e-73 278.5 259 49.4
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 9.8e-73 278.5 485 35.9
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 1.3e-72 278.1 485 36.1
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 4.9e-72 276.2 245 53.1
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 4.9e-72 276.2 253 50.2
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 4.9e-72 276.2 506 34.2
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 5.4e-71 272.7 245 52.7
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.0e-69 268.5 165 72.7
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 2.3e-69 267.3 450 36.0
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 2.3e-69 267.3 450 36.0
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.9e-68 264.2 515 35.5
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 1.6e-67 261.2 342 47.4
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 1.4e-66 258.1 252 50.4
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 3.1e-66 256.9 434 35.0
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 9.9e-65 251.9 456 34.4
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 9.9e-65 251.9 456 34.4
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 6.4e-64 249.2 175 62.9
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 1.2e-59 235.0 395 40.0
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.8e-59 233.8 197 52.3
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 1.6e-54 218.0 254 49.2
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.1e-51 207.6 126 71.4
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.1e-47 195.3 311 40.2
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 1.2e-46 191.8 124 69.4
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 3.3e-44 183.7 196 43.4
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 9.6e-44 182.2 104 77.9
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 2.8e-43 180.6 311 42.1
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.0e-41 174.5 104 76.0
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 4.9e-40 169.9 121 66.1
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.1e-30 137.9 82 76.8
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 2.6e-25 120.9 322 35.4
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 1.7e-24 118.2 104 49.0
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.7e-24 118.2 160 40.0
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 4.2e-23 113.6 94 53.2
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.5e-17 95.1 252 31.0
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 2.6e-17 94.4 59 71.2
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 2.1e-14 84.7 251 31.9
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.2e-09 68.9 285 28.8
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 4.5e-09 67.0 245 28.2
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 3.8e-08 63.9 115 40.0


User provided reference genes

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