Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 1.5e-250 869.0 421 100.0
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 1.8e-232 808.9 429 92.3
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 2.7e-207 725.3 422 83.9
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 1.5e-194 682.9 422 78.7
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 4.4e-194 681.4 426 77.7
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 2.4e-192 675.6 419 77.8
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 1.7e-190 669.5 422 78.7
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 2.9e-190 668.7 422 77.3
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 8.6e-190 667.2 422 78.2
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 8.6e-190 667.2 422 78.4
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 2.5e-189 665.6 423 78.3
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 1.8e-184 649.4 423 76.4
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 5.4e-184 647.9 422 73.9
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 1.5e-181 639.8 423 73.8
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 3.3e-181 638.6 416 74.5
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 4.3e-181 638.3 423 73.3
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 6.2e-180 634.4 424 74.5
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 1.8e-179 632.9 421 74.1
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 1.5e-178 629.8 415 73.7
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 1.5e-178 629.8 425 73.4
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 5.8e-178 627.9 419 73.7
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 5.8e-178 627.9 427 71.0
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 9.8e-178 627.1 429 72.0
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 8.3e-177 624.0 433 71.1
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 3.2e-176 622.1 422 72.3
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 4.1e-176 621.7 416 73.3
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 6.0e-175 617.8 419 71.1
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 6.0e-175 617.8 433 70.0
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 2.3e-174 615.9 421 71.3
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 1.1e-173 613.6 415 72.3
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.9e-173 612.8 408 73.0
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 5.6e-173 611.3 433 69.7
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 7.3e-173 610.9 386 78.2
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 1.6e-172 609.8 415 70.8
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 8.1e-172 607.4 432 69.2
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 1.1e-171 607.1 420 73.3
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 1.1e-171 607.1 416 71.6
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 2.3e-171 605.9 416 70.2
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 5.2e-171 604.7 418 68.9
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 8.9e-171 604.0 417 69.3
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 2.6e-170 602.4 416 70.0
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 3.4e-170 602.1 416 71.2
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 4.4e-170 601.7 417 69.1
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 5.8e-170 601.3 421 70.1
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 5.8e-170 601.3 417 69.3
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 5.8e-170 601.3 417 69.1
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 7.5e-170 600.9 416 70.9
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 9.9e-170 600.5 424 69.8
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 2.2e-169 599.4 416 71.4
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 3.7e-169 598.6 417 68.8
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 8.3e-169 597.4 418 69.1
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 1.1e-168 597.0 415 70.4
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 1.4e-168 596.7 416 69.2
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 4.1e-168 595.1 418 68.2
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 3.5e-167 592.0 425 69.4
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 6.0e-167 591.3 416 70.2
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 1.3e-166 590.1 478 64.6
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 1.3e-166 590.1 419 69.0
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 6.6e-166 587.8 406 70.0
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 8.6e-166 587.4 429 67.8
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 1.1e-165 587.0 418 67.9
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 2.5e-165 585.9 446 66.8
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 2.1e-164 582.8 414 67.6
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 2.8e-164 582.4 420 70.5
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 3.6e-164 582.0 379 75.5
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 8.1e-164 580.9 416 70.0
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 6.8e-163 577.8 447 65.3
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 1.2e-162 577.0 418 68.7
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 1.5e-162 576.6 416 69.0
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.4e-161 571.2 416 69.5
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 8.4e-161 570.9 435 65.5
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 8.4e-161 570.9 425 67.3
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 1.9e-160 569.7 422 68.0
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 3.2e-160 568.9 425 67.1
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 7.1e-160 567.8 453 64.7
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 7.1e-160 567.8 418 65.6
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 9.2e-160 567.4 424 64.4
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.2e-159 567.0 403 71.2
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 3.5e-159 565.5 416 69.0
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 7.8e-159 564.3 473 62.4
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.7e-158 563.1 390 70.0
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 3.0e-158 562.4 428 65.9
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.1e-158 561.6 415 68.2
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 2.1e-156 556.2 393 69.5
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 8.1e-156 554.3 423 64.8
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.2e-155 551.6 455 62.9
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 1.3e-153 547.0 392 70.4
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 2.7e-151 539.3 420 63.6
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 8.1e-148 527.7 418 62.7
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 7.6e-146 521.2 328 75.9
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 1.1e-144 517.3 444 62.6
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 3.2e-144 515.8 422 64.5
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 1.3e-142 510.4 316 74.7
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 2.4e-139 499.6 299 77.9
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 3.1e-139 499.2 336 70.8
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 1.3e-137 493.8 408 62.0
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 2.9e-137 492.7 309 78.3
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 4.9e-137 491.9 299 74.6
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.0e-134 484.2 304 73.7
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 2.3e-134 483.0 421 58.0
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.3e-131 471.9 327 70.6
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 2.6e-130 469.5 335 67.5
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 1.3e-129 467.2 422 60.0
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 9.7e-125 451.1 423 54.8
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.1e-123 447.6 435 54.9
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 7.6e-122 441.4 415 56.1
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 1.2e-119 434.1 428 52.1
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 3.1e-115 419.5 407 52.8
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.3e-105 387.5 320 63.1
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 3.7e-100 369.4 321 55.1
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.0e-97 361.3 274 67.5
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.8e-97 359.4 295 62.7
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 4.1e-83 312.8 282 60.6
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 4.7e-79 299.3 370 47.0
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 3.0e-78 296.6 183 68.9
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 9.8e-69 265.0 456 36.6
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 4.6e-66 256.1 229 52.4
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 1.1e-56 224.9 572 31.6
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 1.5e-56 224.6 425 36.2
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.7e-52 211.1 129 80.6
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 2.5e-48 197.2 254 48.0
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 5.6e-48 196.1 119 79.8
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 8.9e-46 188.7 195 50.8
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 2.4e-43 180.6 174 56.3
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 1.9e-40 171.0 116 71.6
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.5e-24 118.2 120 59.2
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 1.9e-24 117.9 256 35.5
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 3.1e-22 110.5 138 49.3
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 1.4e-19 101.7 107 46.7
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 9.6e-16 89.0 60 65.0
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.3e-09 67.8 75 53.3
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 1.3e-07 62.0 39 66.7


User provided reference genes

Program Settings