Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 3.1e-232 808.1 425 100.0
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 5.9e-215 750.7 388 95.6
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.5e-210 736.1 425 89.4
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 2.5e-165 585.9 394 73.4
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 1.3e-164 583.6 397 73.6
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 9.0e-163 577.4 396 70.7
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 5.8e-162 574.7 393 71.0
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 1.0e-161 573.9 394 72.1
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 1.7e-161 573.2 393 71.8
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.2e-161 572.8 394 72.3
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 3.8e-161 572.0 345 78.8
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 6.5e-161 571.2 398 69.8
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 6.5e-161 571.2 394 71.1
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.4e-160 570.1 396 68.9
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 2.5e-160 569.3 388 70.9
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 7.1e-160 567.8 358 75.7
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 1.6e-159 566.6 400 71.2
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 2.1e-159 566.2 394 71.3
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 2.1e-159 566.2 392 70.2
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 3.5e-159 565.5 398 72.1
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 4.6e-159 565.1 398 71.9
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 1.3e-158 563.5 393 72.5
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.8e-158 563.1 394 70.8
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.9e-157 559.7 391 69.1
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 2.5e-157 559.3 411 67.4
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 3.3e-157 558.9 394 69.5
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 5.7e-157 558.1 410 69.0
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 7.4e-157 557.8 393 69.7
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.3e-156 557.0 393 69.5
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.6e-156 556.6 393 69.5
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 2.2e-156 556.2 394 69.5
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 3.7e-156 555.4 394 68.0
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.1e-155 553.9 359 74.4
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 1.4e-155 553.5 392 69.4
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 9.0e-155 550.8 393 69.0
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 2.6e-154 549.3 396 68.2
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 3.4e-154 548.9 395 67.8
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 4.5e-154 548.5 397 68.3
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 7.6e-154 547.7 392 68.6
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 1.7e-153 546.6 388 69.1
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.7e-153 546.6 401 66.3
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 9.4e-152 540.8 394 67.3
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 2.3e-150 536.2 432 62.3
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 5.1e-150 535.0 394 68.8
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 6.7e-150 534.6 391 67.3
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 1.5e-149 533.5 358 71.5
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 1.9e-149 533.1 399 66.4
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 2.5e-149 532.7 380 67.9
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 5.7e-149 531.6 374 68.2
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 2.8e-148 529.3 389 65.3
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.4e-147 526.9 393 65.9
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 3.1e-147 525.8 393 65.6
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.5e-146 523.5 355 70.1
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 2.6e-146 522.7 391 67.3
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 3.4e-146 522.3 395 66.6
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 3.4e-146 522.3 340 72.6
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 3.4e-146 522.3 392 65.1
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 4.5e-146 521.9 394 63.7
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 7.7e-146 521.2 376 66.8
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 7.7e-146 521.2 361 69.0
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 2.9e-145 519.2 392 65.1
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 3.8e-145 518.8 377 69.2
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 6.5e-145 518.1 340 73.2
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 6.5e-145 518.1 374 66.8
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 8.5e-145 517.7 393 65.1
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 1.1e-144 517.3 371 69.5
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 1.9e-144 516.5 377 69.0
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 4.2e-144 515.4 378 66.7
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 5.5e-144 515.0 368 67.4
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 7.2e-144 514.6 394 64.7
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 7.2e-144 514.6 413 61.5
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 9.4e-144 514.2 400 64.5
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 1.2e-143 513.8 429 61.3
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 3.6e-143 512.3 393 64.4
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 4.7e-143 511.9 399 64.9
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 4.7e-143 511.9 409 64.3
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 4.7e-143 511.9 397 64.0
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 2.3e-142 509.6 393 63.4
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 2.3e-142 509.6 419 61.1
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 2.3e-142 509.6 419 61.1
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 3.0e-142 509.2 372 68.8
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 8.8e-142 507.7 382 64.9
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 1.5e-141 506.9 380 64.7
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 1.5e-141 506.9 355 69.0
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 7.4e-141 504.6 392 63.5
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 9.7e-141 504.2 377 65.0
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 2.2e-140 503.1 393 63.1
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 3.7e-140 502.3 377 65.0
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 4.8e-140 501.9 377 64.7
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 4.8e-140 501.9 339 70.5
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 6.3e-140 501.5 391 62.9
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 1.1e-139 500.7 393 63.1
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 2.4e-139 499.6 385 63.1
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 2.4e-139 499.6 377 64.7
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 3.1e-139 499.2 377 64.7
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 7.0e-139 498.0 392 65.8
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 2.6e-138 496.1 393 63.1
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 3.4e-138 495.7 396 62.9
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 2.2e-137 493.0 397 62.2
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 3.8e-137 492.3 375 62.9
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 2.5e-136 489.6 391 61.9
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 1.6e-135 486.9 321 71.7
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 2.1e-135 486.5 421 58.2
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 2.1e-135 486.5 294 82.3
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 1.4e-134 483.8 370 64.1
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 3.0e-134 482.6 353 65.7
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 1.1e-133 480.7 374 62.0
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 1.5e-133 480.3 374 62.8
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 1.5e-133 480.3 374 62.8
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 2.0e-133 479.9 425 60.2
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 8.2e-132 474.6 374 60.2
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 4.2e-128 462.2 395 61.0
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 6.1e-127 458.4 395 60.8
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 4.8e-124 448.7 356 60.4
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 9.1e-123 444.5 356 60.4
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 1.6e-122 443.7 321 69.5
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 5.9e-122 441.8 354 63.6
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 1.6e-119 433.7 318 63.8
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 4.7e-119 432.2 389 55.0
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 6.1e-119 431.8 290 71.4
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 1.7e-116 423.7 363 60.3
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 1.2e-114 417.5 291 67.7
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.5e-114 416.0 403 55.3
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.8e-113 412.5 346 61.6
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 3.0e-110 402.9 285 69.8
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 5.8e-101 372.1 293 61.8
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 3.2e-99 366.3 389 50.9
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 2.6e-93 346.7 394 46.7
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 2.6e-93 346.7 404 46.8
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 4.1e-91 339.3 385 46.8
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.6e-90 337.4 296 57.4
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 8.9e-86 321.6 294 56.1
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 5.6e-80 302.4 389 48.8
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 6.4e-76 288.9 341 47.5
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 1.1e-70 271.6 203 63.5
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 4.3e-64 249.6 298 45.3
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.6e-63 247.7 392 40.1
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 6.9e-62 242.3 358 41.1
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 6.9e-62 242.3 358 41.1
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.7e-58 230.3 228 54.4
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 2.5e-56 223.8 158 71.5
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 4.0e-54 216.5 382 37.7
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 1.9e-51 207.6 126 75.4
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 6.0e-50 202.6 229 49.3
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 1.2e-45 188.3 364 35.4
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 6.5e-36 156.0 156 51.3
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 4.8e-31 139.8 368 28.0
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.9e-28 130.6 105 61.9
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 1.1e-27 128.6 381 27.3
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 7.0e-22 109.4 124 50.0
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 2.5e-19 100.9 273 25.6
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 1.2e-18 98.6 71 70.4
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.6e-16 90.9 53 79.2
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 3.3e-16 90.5 83 56.6
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 3.3e-16 90.5 83 56.6
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 2.9e-12 77.4 74 54.1
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 1.5e-08 65.1 41 75.6
ECA248G2349 Erigeron canadensis HOM05D000041 ORTHO05D000452 1.8e-06 58.2 45 60.0


User provided reference genes

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