Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G091300 Populus trichocarpa HOM05D007996 ORTHO05D009821 7.8e-22 106.7 74 100.0
Potri.012G094000 Populus trichocarpa HOM05D007996 ORTHO05D009821 2.2e-16 88.6 74 66.2
Manes.14G054700 Manihot esculenta HOM05D007996 ORTHO05D009821 2.7e-14 81.6 74 62.2
Manes.06G116300 Manihot esculenta HOM05D007996 ORTHO05D009821 4.6e-14 80.9 74 71.6
Thecc.03G124100 Theobroma cacao HOM05D007996 ORTHO05D009821 6.0e-14 80.5 72 72.2
QL10p004811 Quercus lobata HOM05D007996 ORTHO05D009821 1.0e-13 79.7 72 59.7
CiPaw.12G036300 Carya illinoinensis HOM05D007996 ORTHO05D009821 1.3e-13 79.3 73 60.3
TWI14G0037 Tripterygium wilfordii HOM05D007996 ORTHO05D009821 2.5e-12 75.1 43 83.7
Duzib084G1431 Durio zibethinus HOM05D007996 ORTHO05D009821 3.3e-12 74.7 46 84.8
Cpa.g.sc4.79 Carica papaya HOM05D007996 ORTHO05D009821 4.3e-12 74.3 44 79.5
Gohir.A12G188200 Gossypium hirsutum HOM05D007996 ORTHO05D009821 5.6e-12 73.9 72 59.7
Gohir.D12G191000 Gossypium hirsutum HOM05D007996 ORTHO05D009821 5.6e-12 73.9 72 59.7
Gorai.008G204900 Gossypium raimondii HOM05D007996 ORTHO05D009821 5.6e-12 73.9 72 59.7
Psat4g063440 Pisum sativum HOM05D007996 ORTHO05D009821 2.1e-11 72.0 40 90.0
Prupe.5G156000 Prunus persica HOM05D007996 ORTHO05D009821 2.1e-11 72.0 41 80.5
Hma1.2p1_0014F.1_g009860 Hydrangea macrophylla HOM05D007996 ORTHO05D009821 2.8e-11 71.6 43 81.4
CiPaw.11G011200 Carya illinoinensis HOM05D007996 ORTHO05D009821 4.8e-11 70.9 44 81.8
Glyma.17G127600 Glycine max HOM05D007996 ORTHO05D009821 4.8e-11 70.9 39 89.7
Atru.chr9.1020 Acer truncatum HOM05D007996 ORTHO05D009821 8.1e-11 70.1 72 58.3
Haze_07260 Corylus avellana HOM05D007996 ORTHO05D009821 8.1e-11 70.1 38 89.5
Medtr4g103970 Medicago truncatula HOM05D007996 ORTHO05D009821 8.1e-11 70.1 41 82.9
Lalb_Chr07g0183251 Lupinus albus HOM05D007996 ORTHO05D009821 1.1e-10 69.7 39 87.2
Phvul.003G208700 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 1.1e-10 69.7 39 87.2
CSS0022418 Camellia sinensis var. sinensis HOM05D007996 ORTHO05D009821 1.4e-10 69.3 44 75.0
Lj4g0006448 Lotus japonicus HOM05D007996 ORTHO05D009821 1.4e-10 69.3 42 81.0
Nn3g16560 Nelumbo nucifera HOM05D007996 ORTHO05D009821 1.4e-10 69.3 44 79.5
Solyc06g071930.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 4.0e-10 67.8 45 75.6
Sopen06g028210 Solanum pennellii HOM05D007996 ORTHO05D009821 4.0e-10 67.8 45 75.6
PGSC0003DMG400027111 Solanum tuberosum HOM05D007996 ORTHO05D009821 4.0e-10 67.8 45 75.6
TPR.G40415 Trifolium pratense HOM05D007996 ORTHO05D009821 4.0e-10 67.8 39 82.1
Nn4g22432 Nelumbo nucifera HOM05D007996 ORTHO05D009821 6.9e-10 67.0 40 80.0
vmacro19229 Vaccinium macrocarpon HOM05D007996 ORTHO05D009821 9.0e-10 66.6 70 58.6
CAN.G1046.7 Capsicum annuum HOM05D007996 ORTHO05D009821 1.2e-09 66.2 45 73.3
Glyma.05G045400 Glycine max HOM05D007996 ORTHO05D009821 2.0e-09 65.5 39 84.6
SalBow5G2505 Salvia bowleyana HOM05D007996 ORTHO05D009821 4.5e-09 64.3 45 71.1
SalBow5G3809 Salvia bowleyana HOM05D007996 ORTHO05D009821 4.5e-09 64.3 45 71.1
Lalb_Chr08g0236981 Lupinus albus HOM05D007996 ORTHO05D009821 5.8e-09 63.9 42 73.8
TAR629G0997 Trochodendron aralioides HOM05D007996 ORTHO05D009821 5.8e-09 63.9 40 80.0
EL10Ac7g18091 Beta vulgaris HOM05D007996 ORTHO05D009821 1.7e-08 62.4 39 74.4
AUR62001291 Chenopodium quinoa HOM05D007996 ORTHO05D009821 1.7e-08 62.4 38 78.9
Actinidia25607 Actinidia chinensis HOM05D007996 ORTHO05D009821 2.2e-08 62.0 37 83.8
ClCG03G003560 Citrullus lanatus HOM05D007996 ORTHO05D009821 2.2e-08 62.0 41 75.6
CARHR258170 Cardamine hirsuta HOM05D013032 ORTHO05D009821 3.8e-08 61.2 43 74.4
MBI06_g40149_MAGBIO Magnolia biondii HOM05D007996 ORTHO05D009821 3.8e-08 61.2 38 81.6
Phvul.009G168600 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 3.8e-08 61.2 40 75.0
PGR044G0405 Punica granatum HOM05D007996 ORTHO05D009821 3.8e-08 61.2 35 85.7
Aqoxy5G03550 Aquilegia oxysepala HOM05D007996 ORTHO05D009821 4.9e-08 60.8 69 55.1
COL.COLO4_16835 Corchorus olitorius HOM05D007996 ORTHO05D009821 4.9e-08 60.8 36 91.7
RcHm_v2.0_Chr7g0190871 Rosa chinensis HOM05D007996 ORTHO05D009821 4.9e-08 60.8 35 82.9
Solyc03g110990.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 4.9e-08 60.8 36 80.6
Glyma.04G193300 Glycine max HOM05D007996 ORTHO05D009821 6.5e-08 60.5 38 81.6
Rhsim08G0186300 Rhododendron simsii HOM05D007996 ORTHO05D009821 6.5e-08 60.5 36 86.1
Sed0008862 Sechium edule HOM05D007996 ORTHO05D009821 6.5e-08 60.5 41 73.2
AT5G50335 Arabidopsis thaliana HOM05D013032 ORTHO05D009821 8.4e-08 60.1 46 65.2
FAN04G1274 Fragaria x ananassa HOM05D007996 ORTHO05D009821 8.4e-08 60.1 35 80.0
FAN08G0192 Fragaria x ananassa HOM05D007996 ORTHO05D009821 8.4e-08 60.1 35 80.0
FAN13G1950 Fragaria x ananassa HOM05D007996 ORTHO05D009821 8.4e-08 60.1 35 80.0
TWI39G0948 Tripterygium wilfordii HOM05D000063 ORTHO05D008721 1.1e-07 59.7 43 67.4
AUR62025676 Chenopodium quinoa HOM05D007996 ORTHO05D009821 1.4e-07 59.3 36 80.6
FAN18G2201 Fragaria x ananassa HOM05D007996 ORTHO05D009821 1.9e-07 58.9 35 77.1
Sed0027846 Sechium edule HOM05D007996 ORTHO05D009821 1.9e-07 58.9 41 73.2
Cc04_g10190 Coffea canephora HOM05D007996 ORTHO05D009821 2.5e-07 58.5 40 75.0
CsaV3_1G009400 Cucumis sativus L. HOM05D007996 ORTHO05D009821 2.5e-07 58.5 36 83.3
Sp6g12420 Schrenkiella parvula HOM05D013032 ORTHO05D009821 2.5e-07 58.5 43 67.4
Actinidia16189 Actinidia chinensis HOM05D007996 ORTHO05D009821 4.2e-07 57.8 38 78.9
MELO3C002341.2 Cucumis melo HOM05D007996 ORTHO05D009821 4.2e-07 57.8 36 83.3
Oeu045473.1 Olea europaea HOM05D007996 ORTHO05D009821 4.2e-07 57.8 43 74.4
AL8G24410 Arabidopsis lyrata HOM05D013032 ORTHO05D009821 5.5e-07 57.4 46 65.2
BcaB08g35412 Brassica carinata HOM05D013032 ORTHO05D009821 7.1e-07 57.0 43 65.1
Carub.0008s1039 Capsella rubella HOM05D013032 ORTHO05D009821 7.1e-07 57.0 46 65.2
Lsat_1_v5_gn_1_29541 Lactuca sativa HOM05D007996 ORTHO05D009821 7.1e-07 57.0 37 73.0
Migut.I00487 Erythranthe guttata HOM05D007996 ORTHO05D009821 9.3e-07 56.6 37 67.6
DCAR_007470 Daucus carota HOM05D007996 ORTHO05D009821 1.2e-06 56.2 36 75.0
Nitab4.5_0005327g0040 Nicotiana tabacum HOM05D007996 ORTHO05D009821 2.7e-06 55.1 47 68.1
BcaC04g20800 Brassica carinata HOM05D013032 ORTHO05D009821 3.5e-06 54.7 43 62.8
A10p08350 Brassica napus HOM05D013032 ORTHO05D009821 3.5e-06 54.7 43 62.8
BolC9t56782H Brassica oleracea HOM05D013032 ORTHO05D009821 3.5e-06 54.7 43 62.8
BraSC37t46169Z Brassica rapa HOM05D013032 ORTHO05D009821 3.5e-06 54.7 43 62.8
MBI11_g42682_MAGBIO Magnolia biondii HOM05D007996 ORTHO05D009821 3.5e-06 54.7 39 66.7
Oeu037569.1 Olea europaea HOM05D007996 ORTHO05D009821 3.5e-06 54.7 43 72.1


User provided reference genes

Program Settings