Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 0.0e+00 1129.4 593 100.0
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 0.0e+00 1086.6 593 96.3
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 3.6e-295 1017.7 596 89.9
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 8.7e-289 996.5 597 88.1
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 4.8e-287 990.7 594 87.5
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 8.1e-287 989.9 595 85.7
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 9.0e-286 986.5 593 86.0
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.2e-285 986.1 595 86.1
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 2.0e-285 985.3 593 86.2
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 4.5e-285 984.2 595 86.1
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 3.8e-284 981.1 595 86.4
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 6.4e-284 980.3 586 87.7
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 1.1e-283 979.5 595 85.7
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 1.9e-283 978.8 598 85.8
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.6e-282 975.7 595 83.9
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 4.6e-282 974.2 595 85.7
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 6.7e-281 970.3 595 85.2
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 8.7e-281 969.9 598 84.8
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.1e-280 969.5 594 85.0
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 2.5e-280 968.4 598 86.0
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 1.3e-276 956.1 594 85.0
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 6.5e-276 953.7 598 84.1
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 3.5e-274 948.0 599 82.6
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 6.0e-274 947.2 601 82.7
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 7.9e-274 946.8 601 82.7
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 1.8e-273 945.7 600 82.2
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 3.0e-273 944.9 597 82.7
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.9e-273 944.5 602 82.6
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 2.5e-272 941.8 595 82.7
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 2.1e-271 938.7 608 80.4
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 2.1e-271 938.7 594 82.5
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 2.1e-271 938.7 598 82.3
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 1.8e-270 935.6 594 82.3
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 3.1e-270 934.9 596 82.7
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 5.3e-270 934.1 600 82.3
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 2.6e-269 931.8 601 81.9
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.7e-268 929.1 597 81.1
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.7e-268 929.1 602 81.6
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 1.1e-267 926.4 602 81.1
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 1.1e-267 926.4 606 80.2
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.5e-267 925.2 607 76.8
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.5e-267 925.2 602 80.9
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.2e-267 924.9 600 80.7
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 7.2e-267 923.7 607 76.6
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 4.6e-266 921.0 595 81.3
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 4.6e-266 921.0 595 79.7
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.3e-265 919.5 595 81.3
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.3e-265 919.5 595 81.3
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.8e-265 919.1 594 81.0
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 2.5e-264 915.2 589 80.3
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 7.4e-264 913.7 610 79.8
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.6e-263 912.5 598 79.4
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.2e-261 906.4 595 79.3
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.5e-261 906.0 595 79.5
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 2.6e-261 905.2 595 79.3
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 4.5e-261 904.4 595 80.0
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 5.9e-261 904.0 595 79.7
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.3e-260 902.9 595 79.2
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 2.9e-260 901.7 595 79.3
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 2.9e-260 901.7 611 79.2
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 4.2e-259 897.9 602 78.1
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 5.5e-259 897.5 596 77.5
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 5.5e-259 897.5 596 77.5
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 1.6e-258 896.0 597 78.7
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 4.6e-258 894.4 601 77.7
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 6.1e-258 894.0 597 77.1
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.0e-257 893.3 607 76.8
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 1.4e-257 892.9 595 78.2
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 1.8e-257 892.5 605 77.4
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 2.3e-257 892.1 597 78.6
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 6.7e-257 890.6 605 77.2
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.5e-256 889.4 601 77.2
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 7.4e-256 887.1 601 77.7
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 3.7e-255 884.8 598 77.3
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.1e-254 883.2 597 77.4
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.1e-254 883.2 597 77.4
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.1e-254 883.2 597 77.4
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 5.9e-253 877.5 614 75.6
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 7.7e-253 877.1 607 75.9
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 1.7e-252 875.9 597 75.9
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 2.2e-252 875.5 594 76.1
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 2.9e-252 875.2 605 75.5
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 8.5e-252 873.6 599 76.8
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.1e-251 873.2 604 76.8
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 1.1e-251 873.2 594 75.6
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.0e-249 866.7 588 76.5
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 1.8e-249 865.9 608 75.0
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 3.0e-249 865.1 592 76.4
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 8.8e-249 863.6 600 76.8
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 8.8e-249 863.6 595 75.8
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.5e-248 862.8 594 75.1
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 3.1e-246 855.1 595 76.0
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 1.2e-245 853.2 592 75.2
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 4.5e-245 851.3 594 74.7
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 1.0e-244 850.1 594 75.1
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 1.5e-243 846.3 603 73.8
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 3.6e-242 841.6 597 75.0
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 2.0e-240 835.9 597 73.4
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 2.6e-240 835.5 600 73.8
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 3.7e-239 831.6 595 73.3
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 4.8e-239 831.2 592 73.8
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 7.0e-238 827.4 601 75.4
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 1.7e-236 822.8 597 71.5
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 3.8e-236 821.6 643 69.7
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 8.5e-236 820.5 551 75.0
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 2.1e-234 815.8 547 77.7
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 4.7e-234 814.7 596 72.8
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 5.2e-233 811.2 607 72.0
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 8.8e-233 810.4 601 71.9
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.8e-231 804.7 601 72.4
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 7.2e-227 790.8 870 53.9
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 8.0e-226 787.3 596 72.5
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.0e-225 786.9 608 68.9
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 5.2e-225 784.6 593 72.2
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 3.4e-224 781.9 608 68.4
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 2.7e-221 772.3 613 67.5
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 8.3e-215 750.7 596 66.3
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 5.4e-214 748.0 566 71.0
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 2.7e-213 745.7 594 67.7
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.0e-204 714.9 474 78.9
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.4e-190 670.2 596 64.3
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 5.8e-184 648.3 492 70.7
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.4e-169 599.7 517 65.6
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 1.2e-160 570.9 601 53.2
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 1.1e-158 564.3 596 51.8
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 1.4e-153 547.4 598 52.7
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 2.5e-142 510.0 600 52.7
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 1.9e-134 483.8 613 44.7
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 3.3e-131 473.0 581 48.7
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 2.0e-91 340.9 209 78.9
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.4e-91 340.1 243 70.4
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 1.0e-87 328.6 322 57.1
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 8.6e-79 298.9 627 34.4
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.4e-68 265.0 234 65.0
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.6e-67 260.8 214 65.9
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 1.4e-60 238.4 578 31.1
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 6.2e-53 213.0 147 74.8
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 9.9e-51 205.7 151 71.5
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.0e-34 152.5 201 46.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 1.6e-32 145.2 98 72.4
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 6.1e-32 143.3 621 24.0
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 4.2e-25 120.6 80 72.5
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 2.7e-24 117.9 78 69.2
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 4.7e-24 117.1 210 49.5
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 2.3e-23 114.8 78 67.9
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 1.0e-18 99.4 95 57.9
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 2.9e-18 97.8 107 46.7
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.7e-13 82.0 59 69.5
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.8e-12 78.6 90 47.8


User provided reference genes

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