Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 3.3e-239 831.6 532 100.0
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 3.6e-209 731.9 527 91.5
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 4.9e-190 668.3 534 82.4
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 5.0e-187 658.3 523 82.2
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 4.9e-150 535.4 548 69.0
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 3.5e-148 529.3 547 65.4
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 1.0e-147 527.7 547 68.2
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 1.8e-144 516.9 547 66.4
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 1.4e-141 507.3 549 64.5
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 3.5e-140 502.7 545 69.2
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 2.1e-137 493.4 534 65.2
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 1.8e-136 490.3 541 67.5
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 2.4e-136 490.0 539 67.5
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 5.3e-136 488.8 546 66.8
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 9.0e-136 488.0 535 65.0
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.5e-135 487.3 552 63.6
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 2.6e-135 486.5 554 65.9
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 7.6e-135 485.0 545 66.2
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 2.5e-133 479.9 536 66.4
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 2.5e-133 479.9 549 64.8
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 1.2e-132 477.6 561 61.7
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 1.2e-132 477.6 540 61.5
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.3e-131 474.2 557 62.3
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 1.3e-131 474.2 546 65.4
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 6.7e-131 471.9 549 66.3
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 1.1e-130 471.1 548 61.7
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.1e-130 471.1 547 63.1
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 1.9e-130 470.3 546 62.5
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 5.7e-130 468.8 550 65.5
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 7.4e-130 468.4 587 62.0
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 1.6e-129 467.2 546 63.6
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.6e-129 467.2 548 64.1
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 6.3e-129 465.3 546 61.9
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 8.2e-129 464.9 548 63.9
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.4e-128 464.2 548 63.0
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 3.1e-128 463.0 545 65.5
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 3.1e-128 463.0 546 63.4
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 4.1e-128 462.6 550 60.9
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 9.0e-128 461.5 550 60.5
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 1.3e-126 457.6 543 63.4
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 2.2e-126 456.8 546 65.2
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 3.8e-126 456.1 547 63.6
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 5.5e-125 452.2 542 61.8
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 5.5e-125 452.2 546 63.6
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 1.6e-124 450.7 569 62.2
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 6.7e-123 445.3 539 63.6
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 6.7e-123 445.3 539 64.2
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.1e-122 444.5 551 64.4
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 1.9e-122 443.7 550 60.7
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 1.9e-122 443.7 548 63.1
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.5e-122 443.4 539 64.0
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 3.3e-122 443.0 552 64.1
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 9.7e-122 441.4 552 62.0
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 1.1e-120 438.0 546 62.1
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 1.4e-120 437.6 549 62.7
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 3.1e-120 436.4 535 63.0
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 6.9e-120 435.3 551 63.9
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.0e-119 433.7 545 63.1
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 2.6e-119 433.3 557 60.9
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 3.4e-119 433.0 547 60.9
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 3.4e-119 433.0 540 60.6
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 4.5e-119 432.6 540 60.0
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 1.0e-118 431.4 519 63.6
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 1.1e-117 427.9 551 62.6
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 3.2e-117 426.4 544 58.5
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 9.4e-117 424.9 550 60.5
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 7.9e-116 421.8 550 61.3
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 1.4e-115 421.0 542 61.4
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.4e-115 421.0 585 55.4
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 6.7e-115 418.7 554 63.4
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 4.8e-113 412.5 548 61.9
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 1.1e-112 411.4 550 61.3
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.1e-112 409.8 540 60.4
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 1.2e-111 407.9 550 60.2
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 4.5e-111 406.0 546 61.7
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 1.7e-110 404.1 553 62.0
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 2.5e-109 400.2 553 62.2
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 7.2e-109 398.7 536 59.3
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 1.8e-107 394.0 547 58.0
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 3.3e-106 389.8 545 58.9
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 1.9e-101 374.0 560 57.9
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.2e-100 371.3 547 57.8
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.3e-99 367.1 544 58.3
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 8.8e-99 365.2 549 57.9
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 2.6e-98 363.6 555 55.9
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 1.7e-97 360.9 551 59.5
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 1.1e-96 358.2 462 61.0
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 5.9e-95 352.4 557 51.5
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 3.2e-93 346.7 550 58.7
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 9.4e-93 345.1 538 54.6
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.6e-92 344.4 558 55.9
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 2.1e-92 344.0 599 51.3
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 2.6e-90 337.0 551 56.6
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 9.8e-90 335.1 556 54.5
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 1.7e-89 334.3 554 53.4
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 2.7e-87 327.0 482 59.8
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 3.8e-86 323.2 546 51.5
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 5.0e-86 322.8 556 50.4
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 1.4e-83 314.7 460 57.6
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 4.0e-83 313.2 541 52.5
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 6.8e-83 312.4 551 50.5
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 9.2e-80 302.0 562 50.5
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 4.5e-79 299.7 538 52.4
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 5.9e-79 299.3 545 51.2
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 1.0e-78 298.5 557 48.5
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 2.3e-78 297.4 560 49.1
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 2.9e-78 297.0 551 47.9
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 2.5e-77 293.9 230 72.6
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 9.5e-77 292.0 570 47.9
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 3.6e-76 290.0 584 46.9
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 4.4e-74 283.1 447 55.7
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 4.1e-72 276.6 495 52.7
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 4.1e-72 276.6 549 44.3
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 1.6e-71 274.6 204 74.5
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 2.7e-71 273.9 165 85.5
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.7e-70 271.2 229 70.3
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 1.5e-69 268.1 221 68.3
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 4.3e-69 266.5 584 45.2
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 9.5e-69 265.4 495 54.1
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 2.9e-65 253.8 154 83.1
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 2.6e-58 230.7 203 63.5
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 1.3e-54 218.4 165 73.3
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 4.4e-50 203.4 434 47.7
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.4e-48 197.6 323 50.5
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 4.3e-45 186.8 390 48.2
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 1.1e-43 182.2 270 54.8
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 1.1e-40 172.2 530 34.5
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.6e-34 151.0 125 72.8
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 7.6e-34 149.4 277 48.0
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 1.3e-33 148.7 506 44.1
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 6.2e-28 129.8 74 86.5
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 2.0e-26 124.8 109 69.7
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 5.8e-26 123.2 133 61.7
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.4e-24 118.6 115 65.2
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 1.4e-24 118.6 78 73.1
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 1.2e-23 115.5 111 62.2
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.8e-22 111.7 173 48.6
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 5.6e-21 106.7 107 62.6
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 3.1e-19 100.9 168 39.9
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 4.0e-19 100.5 64 81.2
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 7.6e-18 96.3 103 58.3
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.0e-14 84.3 103 58.3
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 1.1e-13 82.4 58 81.0
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.3e-12 79.0 73 63.0
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.3e-12 79.0 73 63.0
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 3.7e-12 77.4 86 53.5
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.4e-11 74.7 115 54.8
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 2.4e-11 74.7 46 78.3
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 4.6e-07 60.5 156 29.5


User provided reference genes

Program Settings