Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 0.0e+00 1204.5 654 100.0
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 5.0e-197 691.8 618 68.1
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 4.9e-184 648.7 559 69.6
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 2.8e-179 632.9 620 62.6
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 1.2e-177 627.5 616 63.3
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 6.0e-174 615.1 630 63.3
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 2.2e-168 596.7 636 59.7
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 9.3e-167 591.3 624 61.2
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 8.4e-160 568.2 676 55.2
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 9.3e-159 564.7 602 58.3
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 2.8e-155 553.1 627 54.9
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 1.8e-154 550.4 643 52.3
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 3.1e-154 549.7 574 61.7
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 4.9e-152 542.3 574 61.3
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 8.4e-152 541.6 625 53.8
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 2.5e-151 540.0 654 53.8
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 1.6e-150 537.3 627 53.9
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 1.3e-149 534.3 608 56.4
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 2.5e-148 530.0 661 52.0
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 8.2e-147 525.0 663 51.6
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 7.6e-145 518.5 630 56.5
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.7e-144 517.3 661 51.7
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 1.7e-144 517.3 597 53.8
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 1.7e-144 517.3 648 51.2
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 8.5e-144 515.0 662 50.9
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 1.1e-143 514.6 661 51.3
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 1.1e-143 514.6 577 55.8
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 1.4e-143 514.2 606 56.4
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 1.6e-142 510.8 632 52.2
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 2.1e-142 510.4 647 55.2
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 6.1e-142 508.8 663 52.6
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 6.1e-142 508.8 633 55.9
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 7.9e-142 508.4 663 52.5
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 3.0e-141 506.5 593 56.2
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 6.7e-141 505.4 624 51.3
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 3.3e-140 503.1 633 50.2
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 5.7e-140 502.3 635 49.8
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 3.7e-139 499.6 639 56.0
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 3.1e-138 496.5 599 52.3
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 3.1e-138 496.5 596 53.0
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 1.2e-137 494.6 588 53.1
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 2.0e-137 493.8 651 48.5
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 7.9e-134 481.9 609 49.9
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 1.8e-133 480.7 619 49.8
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 3.9e-133 479.6 623 53.6
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 3.7e-131 473.0 639 52.1
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 2.2e-128 463.8 631 51.5
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 7.0e-122 442.2 607 47.1
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 2.6e-121 440.3 438 64.2
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 7.2e-119 432.2 436 61.2
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 3.1e-114 416.8 608 46.2
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 1.2e-113 414.8 553 49.9
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 2.1e-110 404.1 452 61.7
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 4.7e-110 402.9 617 50.1
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 5.5e-103 379.4 554 48.9
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 1.2e-102 378.3 445 58.2
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 2.0e-97 360.9 254 72.8
Sabra15G0107400 Salix brachista HOM05D007670 ORTHO05D009646 1.1e-90 338.6 654 43.7
Glyma.17G124800 Glycine max HOM05D007670 ORTHO05D009646 4.0e-85 320.1 429 49.2
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 5.4e-82 309.7 501 44.7
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 3.9e-80 303.5 544 41.7
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 2.8e-78 297.4 471 44.6
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 2.1e-70 271.2 559 38.3
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 1.1e-69 268.9 247 61.5
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 3.1e-69 267.3 268 55.2
Peaxi162Scf00089g01229 Petunia axillaris HOM05D007670 ORTHO05D009646 2.7e-65 254.2 390 53.6
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 3.5e-65 253.8 241 60.2
Solyc03g112110.1 Solanum lycopersicum HOM05D007670 ORTHO05D009646 1.7e-64 251.5 384 52.1
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 1.2e-60 238.8 244 54.9
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 4.4e-60 236.9 548 37.6
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 6.9e-53 213.0 227 52.0
TAR629G0999 Trochodendron aralioides HOM05D007670 ORTHO05D009646 6.9e-53 213.0 216 58.3
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 1.1e-50 205.7 178 61.2
QL10p006748 Quercus lobata HOM05D007670 ORTHO05D009646 1.7e-35 155.2 144 64.6
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 3.8e-35 154.1 162 51.2
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 2.1e-33 148.3 222 41.0
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.9e-32 144.1 220 39.5
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 5.3e-29 133.7 160 46.2
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.8e-27 127.5 267 32.6
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.8e-27 127.5 267 32.6
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.7e-25 121.3 222 36.0
CsaV3_1G008900 Cucumis sativus L. HOM05D007670 ORTHO05D009646 6.1e-25 120.2 137 54.0
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.4e-23 113.2 224 33.5
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 2.8e-22 111.3 249 35.7
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.8e-21 108.6 293 30.0
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.1e-17 95.1 263 27.8
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 3.3e-15 87.8 228 31.1
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 6.3e-14 83.6 147 37.4
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 6.3e-14 83.6 455 28.4
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 1.4e-10 72.4 249 26.1
MELO3C031542.2 Cucumis melo HOM05D007670 ORTHO05D009646 1.6e-09 68.9 109 39.4
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 2.7e-09 68.2 249 28.1
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 4.7e-09 67.4 171 28.1
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 6.1e-09 67.0 204 27.9
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 6.1e-09 67.0 204 27.9
Actinidia36758 Actinidia chinensis HOM05D007670 ORTHO05D009646 8.0e-09 66.6 75 52.0
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 8.0e-09 66.6 176 30.1
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 1.0e-08 66.2 248 25.8
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 1.0e-08 66.2 249 27.7
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 1.4e-08 65.9 256 25.4
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 2.3e-08 65.1 214 25.7
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 2.3e-08 65.1 249 27.7
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 3.0e-08 64.7 218 26.6
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 3.9e-08 64.3 188 28.2
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 5.2e-08 63.9 228 24.6
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 8.8e-08 63.2 170 27.1
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 1.1e-07 62.8 184 27.7
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 1.5e-07 62.4 257 25.3
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 1.5e-07 62.4 224 27.7
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 1.5e-07 62.4 222 28.4
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 1.5e-07 62.4 172 28.5
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 2.6e-07 61.6 253 26.1
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 2.6e-07 61.6 226 27.9
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 3.3e-07 61.2 187 27.3
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 3.3e-07 61.2 262 25.2
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 4.4e-07 60.8 184 26.6
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 4.4e-07 60.8 244 24.2
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 9.7e-07 59.7 244 23.4
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 1.3e-06 59.3 229 27.9
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 1.3e-06 59.3 287 24.7
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 2.8e-06 58.2 238 26.1
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 2.8e-06 58.2 194 25.8
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 3.7e-06 57.8 247 25.1
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 3.7e-06 57.8 248 27.0
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 3.7e-06 57.8 252 25.8
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 4.8e-06 57.4 196 26.0
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 4.8e-06 57.4 207 25.6
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 4.8e-06 57.4 203 26.1
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 4.8e-06 57.4 203 26.1
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 6.3e-06 57.0 276 26.1
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 8.2e-06 56.6 232 24.1
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 8.2e-06 56.6 250 25.6


User provided reference genes

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