Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 5.7e-192 674.1 344 100.0
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 7.3e-171 604.0 355 89.6
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.7e-159 566.2 344 85.2
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 3.7e-159 565.1 344 85.2
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 9.6e-123 444.1 344 66.3
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 5.8e-120 434.9 345 66.7
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 1.0e-119 434.1 345 66.4
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 5.0e-119 431.8 346 64.7
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 1.9e-118 429.9 345 62.6
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 7.2e-118 427.9 345 65.5
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.7e-117 426.0 345 64.1
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 1.0e-116 424.1 345 60.9
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 1.0e-116 424.1 345 62.9
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.3e-116 423.7 345 63.8
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 1.9e-115 419.9 345 61.2
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 1.3e-114 417.2 345 62.9
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.5e-112 410.2 345 62.9
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 1.0e-111 407.5 345 60.3
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 3.8e-111 405.6 308 67.2
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 3.8e-111 405.6 355 62.3
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 8.5e-111 404.4 346 61.8
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.5e-110 402.9 345 62.6
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 4.2e-110 402.1 345 62.6
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 3.6e-109 399.1 345 61.4
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 1.0e-108 397.5 345 62.3
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 8.8e-108 394.4 344 57.8
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.0e-107 393.3 344 58.1
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.5e-107 392.9 344 57.8
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 4.3e-107 392.1 345 59.7
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 3.1e-105 386.0 345 56.2
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.5e-104 383.6 344 59.9
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.5e-104 383.6 344 59.6
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 5.9e-104 381.7 347 59.1
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 5.9e-104 381.7 345 55.9
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 2.2e-103 379.8 338 58.0
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 7.2e-102 374.8 345 59.7
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.1e-101 373.2 344 53.8
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 3.6e-101 372.5 345 56.5
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.4e-100 370.5 345 59.7
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.5e-99 367.1 345 57.4
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 7.4e-99 364.8 345 57.7
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 7.4e-99 364.8 353 56.9
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 3.7e-98 362.5 348 57.2
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 6.3e-98 361.7 345 57.4
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.8e-97 360.1 344 57.6
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 4.5e-96 355.5 344 55.5
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 5.9e-96 355.1 285 64.2
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 3.8e-95 352.4 345 55.4
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 6.5e-95 351.7 345 53.3
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 2.5e-94 349.7 345 56.2
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 5.5e-94 348.6 346 52.9
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 9.4e-94 347.8 345 53.9
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 2.1e-93 346.7 346 54.6
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 4.7e-93 345.5 346 54.3
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 6.1e-93 345.1 345 54.2
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 1.0e-92 344.4 345 54.8
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 1.4e-92 344.0 345 54.5
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 5.2e-92 342.0 346 51.4
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 1.5e-91 340.5 346 51.4
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 2.0e-91 340.1 328 56.4
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 2.0e-91 340.1 346 52.6
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 2.6e-91 339.7 346 51.2
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 3.3e-91 339.3 345 55.7
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 3.3e-91 339.3 345 57.4
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 7.5e-91 338.2 345 56.2
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 7.5e-91 338.2 345 54.5
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.3e-90 337.4 348 53.7
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 1.3e-90 337.4 346 52.3
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 2.2e-90 336.7 338 51.8
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 2.8e-90 336.3 337 52.5
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 8.2e-90 334.7 345 53.6
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 1.1e-89 334.3 347 50.1
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.4e-89 334.0 319 56.4
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.4e-89 334.0 325 55.4
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.8e-89 333.6 346 53.5
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.8e-89 333.6 346 53.5
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 2.4e-89 333.2 345 53.6
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 4.1e-89 332.4 346 50.3
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 7.0e-89 331.6 319 56.7
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 9.1e-89 331.3 345 54.5
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.2e-88 330.9 345 54.2
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 2.0e-88 330.1 348 53.4
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.7e-88 329.7 348 51.7
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 7.7e-88 328.2 338 53.8
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 3.8e-87 325.9 345 48.7
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 3.2e-86 322.8 338 50.0
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 7.2e-86 321.6 330 52.1
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 1.2e-85 320.9 346 51.2
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.1e-85 320.1 325 53.8
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 3.6e-85 319.3 345 50.7
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 4.7e-85 318.9 346 51.2
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 8.0e-85 318.2 346 51.4
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 7.5e-83 311.6 261 64.4
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.2e-82 310.1 345 50.7
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.1e-81 307.8 345 48.1
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 2.4e-81 306.6 346 48.8
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 3.1e-81 306.2 345 48.7
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 4.1e-81 305.8 288 54.5
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 4.1e-81 305.8 345 47.2
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 5.4e-81 305.4 346 50.9
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 7.0e-81 305.1 346 50.9
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 3.5e-80 302.8 296 53.0
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 5.9e-80 302.0 347 49.3
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 1.0e-79 301.2 346 50.0
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 1.0e-79 301.2 345 49.9
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.7e-79 300.4 309 52.4
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 2.2e-79 300.1 345 47.8
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 3.8e-79 299.3 336 49.4
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 1.5e-78 297.4 350 48.3
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 4.2e-78 295.8 351 50.4
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 4.2e-78 295.8 346 48.8
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 5.5e-78 295.4 347 49.0
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 7.2e-78 295.0 337 50.1
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 9.4e-78 294.7 344 50.6
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 1.6e-77 293.9 339 50.1
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 4.7e-77 292.4 351 47.9
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 8.0e-77 291.6 309 52.1
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 3.0e-76 289.7 345 48.7
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 8.8e-76 288.1 335 49.9
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 5.7e-75 285.4 346 48.3
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.3e-74 284.3 339 48.7
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.8e-73 280.4 345 45.8
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 2.4e-73 280.0 345 47.2
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 8.6e-71 271.6 336 46.1
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 1.9e-70 270.4 345 44.6
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 2.5e-70 270.0 344 47.4
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 2.5e-70 270.0 295 51.2
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 2.1e-69 266.9 345 45.2
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 5.7e-67 258.8 282 50.0
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 5.4e-65 252.3 336 44.0
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 6.2e-61 238.8 308 46.4
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 3.7e-58 229.6 331 41.7
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 3.0e-55 219.9 337 40.1
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.2e-51 208.0 137 69.3
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 3.4e-51 206.5 200 54.0
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 4.9e-50 202.6 346 37.6
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 8.3e-50 201.8 344 37.5
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 2.3e-47 193.7 344 38.4
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.0e-47 193.4 137 65.7
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 6.6e-47 192.2 129 67.4
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 5.2e-44 182.6 243 42.4
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 1.0e-39 168.3 212 40.1
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 3.8e-34 149.8 336 34.8
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 2.7e-32 143.7 285 38.2
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 5.3e-28 129.4 103 57.3
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 6.4e-26 122.5 126 53.2
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 3.1e-12 77.0 208 33.7
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 2.7e-08 63.9 219 29.2
AagrBONN_evm.TU.Sc2ySwM_362.2194 Anthoceros agrestis HOM05D024261 ORTHO05D026617 1.0e-07 62.0 225 25.8
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 3.3e-06 57.0 42 61.9
Actinidia19336 Actinidia chinensis HOM05D005107 ORTHO05D006200 9.6e-06 55.5 72 40.3


User provided reference genes

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