Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 1.3e-141 506.5 288 100.0
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 7.3e-124 447.6 288 86.1
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 2.6e-121 439.1 310 81.0
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 5.4e-119 431.4 289 86.9
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 1.4e-106 390.2 288 79.2
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 2.4e-103 379.4 298 72.1
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 4.2e-103 378.6 298 72.1
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 7.1e-103 377.9 290 73.4
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 2.7e-102 375.9 303 70.0
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 1.0e-101 374.0 293 73.4
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 2.5e-100 369.4 300 71.3
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 3.3e-100 369.0 300 71.3
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 7.4e-100 367.9 298 70.8
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 7.4e-100 367.9 300 71.0
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 9.6e-100 367.5 295 77.3
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 4.8e-99 365.2 290 74.8
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 4.8e-99 365.2 295 76.3
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 4.8e-99 365.2 303 76.2
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 8.1e-99 364.4 279 72.0
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.1e-98 364.0 288 73.3
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 2.4e-98 362.8 321 66.7
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 5.3e-98 361.7 301 75.7
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 5.3e-98 361.7 299 72.2
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 2.6e-97 359.4 301 75.1
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 4.5e-97 358.6 302 65.2
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 1.7e-96 356.7 294 68.7
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 8.4e-96 354.4 309 68.6
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.4e-95 353.6 301 67.4
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 2.4e-95 352.8 297 69.0
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 7.1e-95 351.3 285 69.8
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 9.3e-95 350.9 216 79.2
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 1.2e-94 350.5 303 69.3
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 1.6e-94 350.1 303 73.6
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 2.3e-93 346.3 300 63.0
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 2.3e-93 346.3 288 69.1
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 5.1e-93 345.1 305 69.2
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 5.1e-93 345.1 295 72.2
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 8.7e-93 344.4 294 68.7
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 8.7e-93 344.4 295 69.5
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 1.9e-92 343.2 292 70.2
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 3.3e-92 342.4 290 64.1
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 5.6e-92 341.7 295 71.5
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 9.6e-92 340.9 301 61.8
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 1.3e-91 340.5 215 79.1
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 2.1e-91 339.7 293 71.3
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 2.8e-91 339.3 286 70.6
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 8.1e-91 337.8 215 79.1
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 1.1e-90 337.4 286 69.9
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 4.0e-90 335.5 294 72.1
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 2.0e-89 333.2 288 70.1
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 2.2e-88 329.7 213 77.5
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 6.5e-88 328.2 285 68.8
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 8.4e-88 327.8 239 69.5
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 1.1e-87 327.4 295 66.4
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 3.2e-87 325.9 253 79.8
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.2e-87 325.5 296 63.9
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 4.2e-87 325.5 210 81.0
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.2e-87 325.5 282 63.8
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 7.1e-87 324.7 283 70.3
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 7.1e-87 324.7 283 70.3
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 7.1e-87 324.7 244 68.0
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 9.3e-87 324.3 243 74.1
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.2e-86 323.9 285 68.8
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 1.6e-86 323.6 288 70.8
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 1.6e-86 323.6 282 61.7
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 1.6e-86 323.6 254 65.7
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 2.1e-86 323.2 210 75.7
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 3.5e-86 322.4 251 74.5
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 6.0e-86 321.6 283 70.0
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 6.0e-86 321.6 248 71.0
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 6.0e-86 321.6 288 66.0
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 1.3e-85 320.5 216 79.2
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 2.3e-85 319.7 288 62.8
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 3.0e-85 319.3 209 82.8
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 1.1e-84 317.4 301 60.5
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 4.3e-84 315.5 239 72.8
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 6.3e-83 311.6 257 63.0
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 1.8e-82 310.1 287 59.6
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 1.2e-81 307.4 285 64.6
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 2.0e-81 306.6 286 67.8
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 2.6e-81 306.2 302 59.6
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.7e-80 303.5 194 77.3
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 1.7e-80 303.5 215 69.8
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 8.5e-80 301.2 278 63.3
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 1.9e-79 300.1 255 65.5
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 1.9e-79 300.1 213 74.6
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 3.2e-79 299.3 285 63.5
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 5.5e-79 298.5 254 61.4
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 9.3e-79 297.7 303 64.0
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 9.7e-76 287.7 189 76.2
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 1.6e-75 287.0 271 63.1
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 2.2e-75 286.6 256 59.8
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 1.4e-74 283.9 208 70.7
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 4.1e-74 282.3 215 69.8
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 3.8e-72 275.8 189 74.6
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 1.9e-71 273.5 212 65.1
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 3.2e-71 272.7 309 51.5
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 1.2e-70 270.8 209 65.6
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 2.7e-70 269.6 255 58.4
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 3.6e-70 269.2 144 88.2
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 3.6e-70 269.2 233 70.4
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 6.7e-69 265.0 288 57.6
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 9.4e-63 244.6 212 61.3
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 5.2e-61 238.8 226 69.0
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 9.1e-58 228.0 120 88.3
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 2.2e-48 196.8 207 56.5
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 6.3e-43 178.7 180 56.7
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 5.0e-40 169.1 133 66.2
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 2.5e-31 140.2 183 42.1
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.8e-29 134.0 204 46.1
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 1.8e-26 124.0 171 59.1
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.4e-26 123.6 179 45.3
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 8.6e-24 115.2 64 82.8
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 1.9e-23 114.0 89 70.8
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 1.9e-23 114.0 121 56.2
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 2.8e-22 110.2 104 60.6
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 2.3e-21 107.1 124 53.2
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 1.4e-18 97.8 94 57.4
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.4e-18 97.1 73 68.5
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.2e-17 94.7 133 39.1
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 3.3e-15 86.7 57 73.7
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 5.6e-15 85.9 107 42.1
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 1.2e-14 84.7 103 51.5
Cpa.g.sc685.1 Carica papaya HOM05D006234 ORTHO05D007813 7.5e-12 75.5 109 47.7
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 1.9e-07 60.8 139 31.7
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 7.3e-07 58.9 53 60.4
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 9.5e-07 58.5 28 92.9
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 4.7e-06 56.2 135 30.4


User provided reference genes

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