Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 2.9e-296 1021.1 529 100.0
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 3.9e-280 967.6 529 93.8
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 1.8e-229 799.3 540 77.6
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 1.2e-228 796.6 545 76.5
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 5.8e-228 794.3 546 77.5
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 7.1e-226 787.3 523 77.6
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 6.0e-225 784.3 546 76.6
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 1.0e-224 783.5 523 76.7
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 6.7e-224 780.8 480 82.1
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 1.3e-222 776.5 500 79.0
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 1.6e-222 776.2 519 77.5
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 1.5e-220 769.6 470 81.3
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 5.0e-219 764.6 526 76.6
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 8.5e-219 763.8 527 74.2
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 7.2e-218 760.8 464 83.2
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 7.2e-218 760.8 545 74.1
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 3.0e-216 755.4 546 72.5
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 3.0e-216 755.4 553 73.4
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 2.8e-214 748.8 547 72.2
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 4.8e-214 748.0 547 72.2
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 8.2e-214 747.3 515 74.8
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 8.2e-214 747.3 470 79.4
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 1.1e-213 746.9 547 72.0
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 1.4e-213 746.5 481 77.8
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 1.3e-211 740.0 527 72.5
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 3.8e-211 738.4 535 70.7
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 5.0e-211 738.0 543 71.3
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 6.5e-211 737.6 519 73.2
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 8.5e-211 737.3 528 71.6
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 1.9e-210 736.1 526 71.7
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 3.2e-210 735.3 549 70.5
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 5.5e-210 734.6 544 70.8
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 2.1e-209 732.6 548 68.6
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 2.7e-209 732.3 527 71.7
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 3.6e-209 731.9 523 71.1
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 7.9e-209 730.7 467 77.5
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 7.9e-209 730.7 531 71.6
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 7.9e-209 730.7 540 70.0
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 1.8e-208 729.6 527 71.3
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 5.1e-208 728.0 487 75.4
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 1.5e-207 726.5 523 71.1
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 3.3e-207 725.3 470 75.7
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 2.8e-206 722.2 532 72.0
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 2.4e-205 719.2 533 70.7
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 1.0e-203 713.8 479 74.1
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 1.3e-203 713.4 527 68.7
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 2.2e-203 712.6 466 75.3
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 1.4e-202 709.9 481 73.6
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 1.4e-202 709.9 537 68.7
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 3.2e-202 708.8 477 76.3
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 3.2e-202 708.8 459 76.0
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 1.6e-201 706.4 487 71.7
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 3.6e-201 705.3 459 75.4
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 4.7e-201 704.9 488 72.7
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 1.0e-200 703.7 510 70.0
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 1.4e-200 703.4 459 75.2
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 1.8e-200 703.0 527 67.6
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 4.4e-199 698.4 541 67.3
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 7.4e-199 697.6 459 74.9
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 2.2e-198 696.0 502 71.7
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 6.3e-198 694.5 503 69.2
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 5.3e-197 691.4 453 75.7
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 5.9e-196 688.0 510 66.9
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 3.6e-193 678.7 472 71.8
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 6.1e-193 677.9 440 75.2
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 6.1e-193 677.9 472 71.4
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 3.3e-191 672.2 541 64.7
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 1.7e-190 669.8 524 64.5
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 2.2e-190 669.5 479 68.7
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 3.7e-190 668.7 476 69.5
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 1.8e-189 666.4 476 69.5
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 4.1e-189 665.2 526 64.4
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 5.3e-189 664.8 554 65.7
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 5.9e-188 661.4 476 68.7
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 7.7e-188 661.0 493 66.7
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 1.0e-187 660.6 500 65.6
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 2.2e-187 659.4 476 68.5
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 3.8e-187 658.7 527 66.6
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 8.5e-187 657.5 492 66.7
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 1.9e-186 656.4 475 67.8
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 1.9e-186 656.4 470 69.6
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 2.7e-185 652.5 459 70.8
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 4.0e-184 648.7 544 62.3
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 4.4e-183 645.2 544 61.9
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 9.8e-183 644.0 552 61.2
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 1.5e-175 620.2 505 63.0
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 2.0e-175 619.8 455 67.5
AUR62015881 Chenopodium quinoa HOM05D006019 ORTHO05D007900 5.4e-173 611.7 514 61.1
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 3.5e-172 609.0 527 60.7
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 4.5e-172 608.6 443 67.5
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 7.3e-170 601.3 474 65.6
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 7.5e-167 591.3 480 62.9
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 1.1e-162 577.4 467 61.0
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 1.8e-160 570.1 453 60.9
Sc16g0005740 Simmondsia chinensis HOM05D006019 ORTHO05D007900 2.0e-156 556.6 477 63.1
SGA_v2.0_scaffold171G38908 Striga asiatica HOM05D006019 ORTHO05D007900 1.6e-153 547.0 494 59.5
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 1.2e-151 540.8 373 72.9
SalBow8G4839 Salvia bowleyana HOM05D006019 ORTHO05D007900 1.7e-150 537.0 485 59.4
BcaC03g14252 Brassica carinata HOM05D006019 ORTHO05D007900 4.1e-141 505.8 391 63.7
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 1.2e-137 494.2 526 47.3
FAN11G0939 Fragaria x ananassa HOM05D006019 ORTHO05D007900 4.0e-136 489.2 362 68.2
CDE04G0522 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 2.4e-133 479.9 387 62.3
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 5.3e-128 462.2 470 48.3
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 2.0e-127 460.3 470 49.1
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 5.4e-125 452.2 452 48.9
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 3.5e-124 449.5 475 46.9
FAN25G3210 Fragaria x ananassa HOM05D006019 ORTHO05D007900 2.8e-121 439.9 381 63.3
CBR_g21850 Chara braunii HOM05D006019 ORTHO05D007900 7.6e-119 431.8 503 45.1
SMO361G0007 Selaginella moellendorffii HOM05D006019 ORTHO05D007900 3.5e-108 396.4 439 44.0
MCO13G367 Micromonas commoda HOM05D006019 ORTHO05D007900 4.1e-72 276.6 496 32.7
PRCOL_00002693 Prasinoderma coloniale HOM05D006019 ORTHO05D007900 2.3e-62 244.2 425 33.4
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 2.4e-56 224.2 385 40.8
VMungo0464G1494 Vigna mungo HOM05D006019 ORTHO05D007900 2.8e-52 210.7 134 73.1
Glyma.14G020800 Glycine max HOM05D006019 ORTHO05D007900 8.3e-49 199.1 136 70.6
Oeu026380.1 Olea europaea HOM05D006019 ORTHO05D007900 1.3e-46 191.8 142 66.9
TAR720G0004 Trochodendron aralioides HOM05D006019 ORTHO05D007900 4.9e-41 173.3 107 81.3
HPP92_015779 Vanilla planifolia HOM05D006019 ORTHO05D007900 1.5e-37 161.8 261 38.3
Cre01.g001750 Chlamydomonas reinhardtii HOM05D006019 ORTHO05D007900 4.4e-34 150.2 437 25.2
Sabra03G0143600 Salix brachista HOM05D000354 ORTHO05D000747 3.2e-32 144.1 82 89.0
VMungo0647G0792 Vigna mungo HOM05D006019 ORTHO05D007900 1.2e-26 125.6 94 70.2
Glyma.14G020666 Glycine max HOM05D006019 ORTHO05D007900 4.4e-26 123.6 92 64.1
Hma1.2p1_4091F.1_g338270 Hydrangea macrophylla HOM05D006019 ORTHO05D007900 1.3e-25 122.1 114 64.0
CDE04G2936 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 2.4e-24 117.9 68 85.3
BraA10t43342Z Brassica rapa HOM05D006019 ORTHO05D007900 3.0e-22 110.9 208 35.1
BolC9t57451H Brassica oleracea HOM05D006019 ORTHO05D007900 5.6e-21 106.7 204 34.3
C09p45770 Brassica napus HOM05D006019 ORTHO05D007900 6.2e-20 103.2 229 32.3
C09p45760 Brassica napus HOM05D006019 ORTHO05D007900 1.4e-19 102.1 120 52.5
BcaC04g20257 Brassica carinata HOM05D006019 ORTHO05D007900 1.3e-14 85.5 80 60.0
unitig_22.g6169 Utricularia gibba HOM05D006019 ORTHO05D007900 2.0e-10 71.6 127 38.6
Ca_29171_v3 Cicer arietinum L. HOM05D006019 ORTHO05D003051 2.3e-06 58.2 347 24.8
BolC9t57452H Brassica oleracea HOM05D006019 ORTHO05D000049 3.0e-06 57.8 61 52.5


User provided reference genes

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