Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G061500 Populus trichocarpa HOM05D007878 ORTHO05D010022 3.7e-289 997.7 559 100.0
Duzib084G0698 Durio zibethinus HOM05D007878 ORTHO05D010022 2.3e-129 466.8 562 51.6
Prupe.5G199300 Prunus persica HOM05D007878 ORTHO05D010022 4.3e-120 436.0 574 48.3
Manes.14G082500 Manihot esculenta HOM05D007878 ORTHO05D010022 2.7e-114 416.8 562 50.0
Thecc.03G095300 Theobroma cacao HOM05D007878 ORTHO05D010022 5.2e-110 402.5 564 47.3
TAR374G1173 Trochodendron aralioides HOM05D007878 ORTHO05D010022 1.5e-109 401.0 555 47.0
FAN18G1316 Fragaria x ananassa HOM05D007878 ORTHO05D010022 9.9e-109 398.3 577 47.1
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 1.9e-107 394.0 568 46.5
CiPaw.11G048800 Carya illinoinensis HOM05D007878 ORTHO05D010022 4.1e-107 392.9 543 48.3
FAN13G2185 Fragaria x ananassa HOM05D007878 ORTHO05D010022 4.1e-107 392.9 575 46.1
Actinidia04859 Actinidia chinensis HOM05D007878 ORTHO05D010022 1.2e-103 381.3 565 47.1
RcHm_v2.0_Chr7g0182231 Rosa chinensis HOM05D007878 ORTHO05D010022 4.9e-100 369.4 574 44.9
Actinidia09234 Actinidia chinensis HOM05D007878 ORTHO05D010022 1.9e-99 367.5 560 45.0
Atru.chr9.783 Acer truncatum HOM05D007878 ORTHO05D010022 5.4e-99 365.9 562 44.8
Nn4g23313 Nelumbo nucifera HOM05D007878 ORTHO05D010022 5.4e-99 365.9 560 44.5
PGR083G0831 Punica granatum HOM05D007878 ORTHO05D010022 2.7e-98 363.6 569 46.0
Manes.06G088500 Manihot esculenta HOM05D007878 ORTHO05D010022 3.5e-98 363.2 560 46.4
Cc04_g14870 Coffea canephora HOM05D007878 ORTHO05D010022 5.1e-97 359.4 572 43.5
Cfa019282 Carpinus fangiana HOM05D007878 ORTHO05D010022 2.5e-96 357.1 555 44.7
CiPaw.11G048500 Carya illinoinensis HOM05D007878 ORTHO05D010022 3.3e-96 356.7 552 46.2
Ciclev10024608m.g Citrus clementina HOM05D007878 ORTHO05D010022 3.6e-95 353.2 549 44.8
FvH4_5g14430 Fragaria vesca HOM05D007878 ORTHO05D010022 3.6e-95 353.2 577 44.2
Dinv38757 Davidia involucrata HOM05D007878 ORTHO05D010022 1.8e-94 350.9 562 43.8
MD14G1206000 Malus domestica HOM05D007878 ORTHO05D010022 2.4e-94 350.5 547 43.7
Aqoxy3G03537 Aquilegia oxysepala HOM05D007878 ORTHO05D010022 2.2e-92 344.0 566 41.3
Gohir.A03G068300 Gossypium hirsutum HOM05D007878 ORTHO05D010022 2.7e-90 337.0 559 40.6
Gorai.003G099100 Gossypium raimondii HOM05D007878 ORTHO05D010022 1.7e-89 334.3 559 41.1
Gohir.D03G094900 Gossypium hirsutum HOM05D007878 ORTHO05D010022 2.3e-89 334.0 559 41.3
COL.COLO4_38427 Corchorus olitorius HOM05D007878 ORTHO05D010022 1.7e-84 317.8 561 41.4
GSVIVG01007952001 Vitis vinifera HOM05D007878 ORTHO05D010022 3.9e-81 306.6 483 45.3
TWI60G1109 Tripterygium wilfordii HOM05D007878 ORTHO05D010022 2.5e-80 303.9 562 40.0
QL10p018347 Quercus lobata HOM05D007878 ORTHO05D010022 9.6e-80 302.0 495 45.9
MBI16_g14990_MAGBIO Magnolia biondii HOM05D007878 ORTHO05D010022 1.8e-78 297.7 563 39.8
CAN.G479.49 Capsicum annuum HOM05D007878 ORTHO05D010022 5.3e-78 296.2 561 39.6
Oeu031812.2 Olea europaea HOM05D007878 ORTHO05D010022 4.9e-76 289.7 567 38.6
Nitab4.5_0001211g0090 Nicotiana tabacum HOM05D007878 ORTHO05D010022 2.1e-74 284.3 562 38.6
Nn3g17364 Nelumbo nucifera HOM05D007878 ORTHO05D010022 7.9e-74 282.3 386 46.1
DCAR_016585 Daucus carota HOM05D007878 ORTHO05D010022 6.7e-73 279.3 533 39.0
Cpa.g.sc13.307 Carica papaya HOM05D007878 ORTHO05D010022 2.8e-71 273.9 560 37.3
PGSC0003DMG400024662 Solanum tuberosum HOM05D007878 ORTHO05D010022 4.8e-71 273.1 563 37.7
MD06G1198500 Malus domestica HOM05D007878 ORTHO05D010022 6.2e-71 272.7 545 39.1
Sopen03g034610 Solanum pennellii HOM05D007878 ORTHO05D010022 1.4e-70 271.6 563 37.5
Ca_21797_v3 Cicer arietinum L. HOM05D007878 ORTHO05D010022 1.2e-69 268.5 556 36.5
Eucgr.B00555 Eucalyptus grandis HOM05D007878 ORTHO05D010022 2.6e-69 267.3 489 41.7
Phvul.003G187300 Phaseolus vulgaris HOM05D007878 ORTHO05D010022 2.6e-69 267.3 555 37.5
Haze_07666 Corylus avellana HOM05D007878 ORTHO05D010022 7.6e-69 265.8 549 37.9
Sed0013205 Sechium edule HOM05D007878 ORTHO05D010022 1.4e-67 261.5 535 38.7
Solyc03g115620.2 Solanum lycopersicum HOM05D007878 ORTHO05D010022 2.5e-67 260.8 564 36.7
Nitab4.5_0002756g0040 Nicotiana tabacum HOM05D007878 ORTHO05D010022 7.1e-67 259.2 562 36.3
ClCG06G015920 Citrullus lanatus HOM05D007878 ORTHO05D010022 7.9e-66 255.8 561 37.4
PSO063G3897 Papaver somniferum HOM05D007878 ORTHO05D010022 5.1e-65 253.1 545 36.7
Peaxi162Scf00274g00029 Petunia axillaris HOM05D007878 ORTHO05D010022 1.9e-64 251.1 537 37.1
Glyma.17G103300 Glycine max HOM05D007878 ORTHO05D010022 1.8e-62 244.6 558 37.3
Medtr4g109150 Medicago truncatula HOM05D007878 ORTHO05D010022 4.1e-62 243.4 557 35.5
CANSAT80G1712 Cannabis sativa HOM05D007878 ORTHO05D010022 6.9e-62 242.7 564 33.9
Lj4g0012809 Lotus japonicus HOM05D007878 ORTHO05D010022 4.5e-61 240.0 556 35.3
MELO3C017199.2 Cucumis melo HOM05D007878 ORTHO05D010022 5.5e-59 233.0 565 35.8
Oeu052465.1 Olea europaea HOM05D007878 ORTHO05D010022 3.9e-57 226.9 564 34.4
CsaV3_1G002630 Cucumis sativus L. HOM05D007878 ORTHO05D010022 8.8e-57 225.7 563 35.2
Oeu052466.1 Olea europaea HOM05D007878 ORTHO05D010022 8.8e-57 225.7 564 34.4
Oeu047269.3 Olea europaea HOM05D007878 ORTHO05D010022 1.3e-52 211.8 564 34.4
Oeu046990.1 Olea europaea HOM05D007878 ORTHO05D010022 1.7e-52 211.5 561 32.4
arahy.Tifrunner.gnm1.ann1.3W98EY Arachis hypogaea HOM05D007878 ORTHO05D010022 5.1e-49 199.9 559 33.1
Sabra15G0086500 Salix brachista HOM05D007878 ORTHO05D010022 1.3e-44 185.3 179 64.8
CSS0029238 Camellia sinensis var. sinensis HOM05D000957 ORTHO05D000754 7.2e-43 179.5 538 31.8
ECA246G4297 Erigeron canadensis HOM05D007878 ORTHO05D010022 2.7e-42 177.6 559 30.6
arahy.Tifrunner.gnm1.ann1.QT4JJ4 Arachis hypogaea HOM05D007878 ORTHO05D010022 1.0e-41 175.6 531 33.0
Migut.I00229 Erythranthe guttata HOM05D007878 ORTHO05D010022 3.9e-41 173.7 560 30.4
TPR.G1999 Trifolium pratense HOM05D007878 ORTHO05D010022 3.3e-40 170.6 556 30.6
ATR0730G174 Amborella trichopoda HOM05D007878 ORTHO05D010022 1.6e-37 161.8 571 29.4
HanXRQChr05g0157141 Helianthus annuus HOM05D007878 ORTHO05D010022 4.2e-35 153.7 536 30.4
DCAR_026030 Daucus carota HOM05D000094 ORTHO05D003883 4.7e-34 150.2 752 25.9
Psat4g049000 Pisum sativum HOM05D007878 ORTHO05D010022 1.9e-27 128.3 556 26.6
DCAR_021514 Daucus carota HOM05D007878 ORTHO05D010022 2.5e-27 127.9 365 34.2
Atru.chr9.308 Acer truncatum HOM05D007878 ORTHO05D010022 9.8e-24 115.9 166 44.0
Lsat_1_v5_gn_5_21161 Lactuca sativa HOM05D007878 ORTHO05D010022 1.7e-20 105.1 365 29.0
MSTRG.22991 Avicennia marina HOM05D007878 ORTHO05D010022 3.3e-19 100.9 155 48.4
SEGI_06346 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 1.0e-17 95.9 365 29.0
SEGI_39497 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 1.4e-17 95.5 541 25.5
SEGI_16968 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 2.3e-17 94.7 581 24.6
Sabra15G0086400 Salix brachista HOM05D007878 ORTHO05D010022 4.9e-15 87.0 57 86.0
Sabra17G0098200 Salix brachista HOM05D004905 ORTHO05D005456 5.4e-14 83.6 539 24.1
arahy.Tifrunner.gnm1.ann1.H3BYSM Arachis hypogaea HOM05D007878 ORTHO05D010022 7.8e-13 79.7 240 32.1
CSS0040498 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 7.8e-13 79.7 478 26.4
arahy.Tifrunner.gnm1.ann1.0CJ0KN Arachis hypogaea HOM05D007878 ORTHO05D010022 1.0e-12 79.3 240 32.1
QL05p067335 Quercus lobata HOM05D001827 ORTHO05D001790 3.6e-10 70.9 567 22.8
Aa31LG3G11780 Aethionema arabicum HOM05D001827 ORTHO05D001790 4.7e-10 70.5 567 23.5
Medtr5g096080 Medicago truncatula HOM05D001827 ORTHO05D001790 6.2e-10 70.1 574 22.5
Eucgr.L01393 Eucalyptus grandis HOM05D001827 ORTHO05D001790 8.0e-10 69.7 534 22.5
Zm00001eb400500 Zea mays HOM05D007878 ORTHO05D010022 5.2e-09 67.0 231 28.1
Eucgr.E03845 Eucalyptus grandis HOM05D001827 ORTHO05D001790 8.9e-09 66.2 534 22.1
Medtr3g007920 Medicago truncatula HOM05D001827 ORTHO05D001790 1.5e-08 65.5 566 23.1
Prupe.4G003200 Prunus persica HOM05D001827 ORTHO05D001790 2.6e-08 64.7 547 21.6
EL10Ac8g20270 Beta vulgaris HOM05D001827 ORTHO05D001790 3.4e-08 64.3 452 23.7
Cfa016913 Carpinus fangiana HOM05D001827 ORTHO05D001790 5.8e-08 63.5 378 23.8
MBI14_g13533_MAGBIO Magnolia biondii HOM05D001827 ORTHO05D001790 7.5e-08 63.2 380 23.2
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 2.2e-07 61.6 563 21.0
AUR62035660 Chenopodium quinoa HOM05D001827 ORTHO05D001790 3.7e-07 60.8 290 25.9
FvH4_3g42741 Fragaria vesca HOM05D001827 ORTHO05D001790 4.9e-07 60.5 384 24.7
CDE02G3428 Ceratophyllum demersum HOM05D001827 ORTHO05D001790 6.4e-07 60.1 564 22.3
Nitab4.5_0011439g0010 Nicotiana tabacum HOM05D004905 ORTHO05D005456 6.4e-07 60.1 467 23.6
Oeu030795.1 Olea europaea HOM05D004905 ORTHO05D005456 6.4e-07 60.1 550 23.3
Ah.04g164900 Amaranthus hybridus HOM05D002198 ORTHO05D002409 1.1e-06 59.3 324 24.1
Ciclev10011170m.g Citrus clementina HOM05D004905 ORTHO05D005456 1.4e-06 58.9 538 21.7
Lj6g0015113 Lotus japonicus HOM05D001827 ORTHO05D001790 1.9e-06 58.5 373 23.1
TAR626G1140 Trochodendron aralioides HOM05D001827 ORTHO05D001790 1.9e-06 58.5 268 24.6
HPP92_019275 Vanilla planifolia HOM05D002198 ORTHO05D002409 1.9e-06 58.5 551 23.4
Haze_07028 Corylus avellana HOM05D001827 ORTHO05D001790 2.4e-06 58.2 529 22.3
Duzib138G0198 Durio zibethinus HOM05D004905 ORTHO05D005456 2.4e-06 58.2 469 23.7
Glyma.02G301400 Glycine max HOM05D001827 ORTHO05D001790 4.1e-06 57.4 571 24.2
Rhsim02G0090400 Rhododendron simsii HOM05D001827 ORTHO05D001790 4.1e-06 57.4 558 21.7
TPR.G8584 Trifolium pratense HOM05D001827 ORTHO05D001790 4.1e-06 57.4 470 24.0
PSO210G6911 Papaver somniferum HOM05D001827 ORTHO05D001790 5.4e-06 57.0 374 21.9
Zm00001eb133280 Zea mays HOM05D001827 ORTHO05D001790 5.4e-06 57.0 261 26.8


User provided reference genes

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