Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 4.8e-60 234.2 108 100.0
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 3.4e-58 228.0 108 95.4
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 1.7e-57 225.7 108 95.4
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 3.3e-53 211.5 104 91.3
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 8.1e-52 206.8 104 88.5
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 3.8e-49 198.0 108 79.6
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 3.8e-49 198.0 109 83.5
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 4.9e-49 197.6 102 84.3
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 6.4e-49 197.2 107 84.1
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 8.4e-49 196.8 108 87.0
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 8.4e-49 196.8 108 87.0
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 8.4e-49 196.8 108 84.3
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 1.1e-48 196.4 102 88.2
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 1.1e-48 196.4 108 83.3
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.4e-48 196.1 101 86.1
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.4e-48 196.1 101 86.1
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 2.4e-48 195.3 105 81.9
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 3.2e-48 194.9 108 87.0
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 3.2e-48 194.9 108 87.0
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.2e-48 194.9 108 83.3
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 4.2e-48 194.5 108 82.4
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 4.2e-48 194.5 108 81.5
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 5.5e-48 194.1 107 80.4
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 7.1e-48 193.7 102 84.3
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 9.3e-48 193.4 108 82.4
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 1.2e-47 193.0 108 83.3
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.2e-47 193.0 108 82.4
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 1.2e-47 193.0 108 82.4
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 1.2e-47 193.0 105 81.0
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.1e-47 192.2 108 82.4
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 2.1e-47 192.2 108 82.4
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 3.5e-47 191.4 101 83.2
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 4.6e-47 191.0 108 81.5
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 4.6e-47 191.0 108 81.5
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 4.6e-47 191.0 101 84.2
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 6.0e-47 190.7 105 81.9
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 6.0e-47 190.7 108 79.6
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 6.0e-47 190.7 108 81.5
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 7.9e-47 190.3 102 84.3
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 7.9e-47 190.3 102 82.4
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 1.0e-46 189.9 108 80.6
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 1.0e-46 189.9 106 78.3
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 1.0e-46 189.9 108 77.8
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 1.0e-46 189.9 98 85.7
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 1.0e-46 189.9 98 85.7
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 1.3e-46 189.5 102 81.4
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 1.3e-46 189.5 102 78.4
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 1.3e-46 189.5 107 77.6
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 1.3e-46 189.5 108 78.7
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 1.8e-46 189.1 108 76.9
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 1.8e-46 189.1 105 81.0
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 1.8e-46 189.1 108 79.6
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 2.3e-46 188.7 105 81.0
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 3.9e-46 188.0 102 80.4
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 3.9e-46 188.0 108 76.9
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 3.9e-46 188.0 108 76.9
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 3.9e-46 188.0 97 85.6
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 3.9e-46 188.0 108 80.6
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 3.9e-46 188.0 102 82.4
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 5.1e-46 187.6 102 80.4
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 5.1e-46 187.6 102 80.4
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 5.1e-46 187.6 108 80.6
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 5.1e-46 187.6 105 81.0
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 6.7e-46 187.2 97 85.6
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 6.7e-46 187.2 97 85.6
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 6.7e-46 187.2 102 78.4
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 6.7e-46 187.2 102 79.4
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 6.7e-46 187.2 97 85.6
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 6.7e-46 187.2 108 78.7
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 6.7e-46 187.2 102 80.4
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 8.7e-46 186.8 102 78.4
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 8.7e-46 186.8 102 79.4
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 8.7e-46 186.8 106 80.2
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 1.1e-45 186.4 102 78.4
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 1.1e-45 186.4 102 78.4
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 1.1e-45 186.4 102 78.4
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.1e-45 186.4 102 80.4
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 1.1e-45 186.4 102 79.4
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 1.1e-45 186.4 96 85.4
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 1.1e-45 186.4 102 83.3
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 1.5e-45 186.0 108 80.6
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 1.9e-45 185.7 108 81.5
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 2.5e-45 185.3 102 78.4
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 2.5e-45 185.3 102 78.4
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 2.5e-45 185.3 103 81.6
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 3.3e-45 184.9 108 77.8
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 3.3e-45 184.9 102 78.4
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 4.3e-45 184.5 104 76.9
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 5.6e-45 184.1 105 76.2
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 7.4e-45 183.7 102 77.5
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 7.4e-45 183.7 102 77.5
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 7.4e-45 183.7 102 79.4
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 7.4e-45 183.7 97 82.5
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 7.4e-45 183.7 102 81.4
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 9.6e-45 183.3 96 88.5
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 9.6e-45 183.3 96 88.5
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 1.3e-44 183.0 105 81.0
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 1.3e-44 183.0 102 76.5
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 1.3e-44 183.0 97 84.5
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 1.3e-44 183.0 108 77.8
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.3e-44 183.0 108 77.8
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.3e-44 183.0 108 77.8
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.3e-44 183.0 108 77.8
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.3e-44 183.0 108 77.8
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 1.6e-44 182.6 97 83.5
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 2.1e-44 182.2 108 75.9
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 2.1e-44 182.2 102 78.4
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 2.1e-44 182.2 102 78.4
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 2.1e-44 182.2 102 78.4
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 2.1e-44 182.2 102 78.4
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 2.1e-44 182.2 102 78.4
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 2.1e-44 182.2 94 80.9
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 2.1e-44 182.2 102 76.5
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 4.8e-44 181.0 97 85.6
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 6.2e-44 180.6 102 77.5
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 1.1e-43 179.9 101 81.2
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 1.4e-43 179.5 104 76.9
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 1.8e-43 179.1 97 78.4
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 1.8e-43 179.1 96 84.4
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 2.4e-43 178.7 97 83.5
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 2.4e-43 178.7 106 78.3
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 5.3e-43 177.6 97 78.4
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 5.3e-43 177.6 100 83.0
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.2e-42 176.4 98 80.6
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 2.0e-42 175.6 105 78.1
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 5.8e-42 174.1 104 75.0
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 1.7e-41 172.6 99 80.8
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 2.9e-41 171.8 105 78.1
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 4.2e-40 167.9 98 78.6
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 7.1e-40 167.2 93 76.3
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 1.6e-39 166.0 102 70.6
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 2.7e-39 165.2 102 70.6
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 2.3e-38 162.2 94 75.5
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 5.1e-38 161.0 84 82.1
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 8.5e-33 143.7 72 88.9
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 4.2e-32 141.4 85 76.5
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 1.5e-29 132.9 68 85.3
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 4.8e-28 127.9 93 63.4
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 4.8e-28 127.9 74 77.0
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 8.2e-28 127.1 93 63.4
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 1.8e-27 125.9 74 79.7
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 9.1e-27 123.6 72 79.2
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 1.7e-25 119.4 69 81.2
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 2.2e-25 119.0 84 61.9
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 2.9e-25 118.6 88 62.5
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 3.6e-23 111.7 84 54.8
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 4.7e-23 111.3 108 53.7
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 7.9e-23 110.5 70 71.4
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 8.8e-22 107.1 86 57.0
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 1.8e-19 99.4 58 70.7
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 7.2e-16 87.4 70 58.6
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 2.1e-15 85.9 71 50.7
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 1.1e-13 80.1 54 66.7
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 5.7e-13 77.8 50 70.0
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 6.5e-09 64.3 37 78.4
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 6.5e-09 64.3 49 59.2
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 1.5e-08 63.2 37 78.4
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 1.9e-08 62.8 76 39.5
GSVIVG01008282001 Vitis vinifera HOM05D004512 ORTHO05D005355 4.0e-06 55.1 29 75.9


User provided reference genes

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