Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 4.6e-180 634.4 312 100.0
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 1.8e-107 393.3 316 69.0
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 5.7e-106 388.3 316 68.7
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 2.0e-95 353.2 316 61.7
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 9.4e-93 344.4 331 58.9
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 1.6e-92 343.6 316 60.1
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 1.6e-92 343.6 316 60.4
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 3.6e-92 342.4 316 59.8
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 4.7e-92 342.0 316 59.8
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 6.1e-92 341.7 316 59.8
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 8.0e-92 341.3 316 59.2
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 1.0e-91 340.9 316 59.8
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.0e-91 340.9 316 59.5
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 1.4e-91 340.5 316 59.5
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.8e-91 340.1 316 59.2
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 3.0e-91 339.3 316 60.8
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 5.2e-91 338.6 316 59.2
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 6.8e-91 338.2 316 59.2
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 1.2e-90 337.4 286 65.0
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 1.5e-90 337.0 316 58.2
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 2.0e-90 336.7 316 58.9
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.0e-90 336.7 316 59.5
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 2.6e-90 336.3 296 60.1
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 4.4e-90 335.5 316 58.9
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 5.7e-90 335.1 316 57.9
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 7.5e-90 334.7 295 61.4
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 7.5e-90 334.7 316 58.5
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 1.3e-89 334.0 316 59.2
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 1.7e-89 333.6 316 58.2
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 2.2e-89 333.2 316 58.5
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 2.8e-89 332.8 316 57.6
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.1e-88 330.9 316 57.9
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 1.8e-88 330.1 296 61.5
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 2.4e-88 329.7 296 61.5
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 5.4e-88 328.6 316 57.6
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 1.2e-87 327.4 316 58.5
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 1.6e-87 327.0 316 58.5
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 1.6e-87 327.0 316 58.5
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 2.7e-87 326.2 316 57.3
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 3.5e-87 325.9 316 58.5
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 5.9e-87 325.1 316 57.9
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 7.7e-87 324.7 295 60.0
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 1.7e-86 323.6 296 59.5
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 2.2e-86 323.2 316 57.0
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 2.9e-86 322.8 296 59.1
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 3.8e-86 322.4 316 56.6
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 5.0e-86 322.0 296 59.8
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 6.5e-86 321.6 316 56.3
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 8.5e-86 321.2 316 57.6
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 8.5e-86 321.2 316 57.3
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 8.5e-86 321.2 296 58.4
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 1.5e-85 320.5 296 58.4
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 1.5e-85 320.5 316 56.6
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 1.9e-85 320.1 316 56.3
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 1.9e-85 320.1 316 55.7
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 3.2e-85 319.3 316 55.7
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 5.5e-85 318.5 316 55.4
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 9.5e-85 317.8 350 53.1
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 9.5e-85 317.8 350 53.1
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.2e-84 317.4 329 56.2
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 1.6e-84 317.0 316 56.6
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 2.1e-84 316.6 316 55.4
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 2.8e-84 316.2 316 55.4
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 3.6e-84 315.8 325 54.8
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 6.1e-84 315.1 296 58.1
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 6.1e-84 315.1 341 53.1
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 1.8e-83 313.5 316 53.8
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 8.8e-83 311.2 290 60.0
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 2.0e-82 310.1 316 55.7
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 1.7e-81 307.0 296 57.1
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 2.2e-81 306.6 296 56.4
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 2.2e-81 306.6 316 54.1
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 2.8e-81 306.2 296 57.1
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 1.8e-80 303.5 296 55.7
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 4.1e-80 302.4 296 55.4
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 7.0e-80 301.6 289 58.5
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 9.2e-80 301.2 296 55.4
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 1.2e-79 300.8 296 55.4
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 1.2e-79 300.8 296 55.4
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 1.2e-79 300.8 296 56.1
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 1.6e-79 300.4 317 54.3
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 2.0e-79 300.1 316 54.4
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 7.8e-79 298.1 296 54.7
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 1.0e-78 297.7 296 55.7
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 1.7e-78 297.0 316 53.2
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 2.9e-78 296.2 316 53.5
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 3.8e-78 295.8 296 54.7
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 3.8e-78 295.8 296 55.1
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 4.3e-77 292.4 316 52.8
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 1.2e-76 290.8 316 51.3
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 3.0e-75 286.2 315 51.7
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 5.2e-75 285.4 282 55.3
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 1.7e-73 280.4 316 50.6
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 1.3e-70 270.8 279 56.6
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 1.3e-70 270.8 295 50.8
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 3.0e-70 269.6 316 48.1
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 7.3e-69 265.0 316 46.8
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.6e-68 263.8 316 46.5
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 8.0e-68 261.5 295 50.2
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 8.9e-67 258.1 316 46.5
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 2.6e-66 256.5 317 48.3
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 3.7e-65 252.7 319 46.7
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 8.3e-65 251.5 315 46.7
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 4.1e-64 249.2 313 46.0
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 4.1e-64 249.2 289 51.9
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 1.0e-62 244.6 315 45.1
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 5.0e-62 242.3 234 56.8
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 1.5e-61 240.7 280 50.7
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 1.6e-60 237.3 296 48.0
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 6.8e-59 231.9 296 48.3
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 2.9e-57 226.5 316 44.6
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 4.9e-57 225.7 317 42.3
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 1.4e-56 224.2 313 41.5
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 2.7e-55 219.9 318 42.5
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 3.9e-54 216.1 307 44.0
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 2.1e-52 210.3 198 56.6
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 2.6e-50 203.4 289 44.3
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 1.7e-49 200.7 173 59.5
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 2.2e-49 200.3 221 52.9
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 3.8e-49 199.5 329 39.8
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 8.4e-49 198.4 213 52.1
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 6.4e-41 172.2 127 69.3
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 4.2e-40 169.5 202 51.0
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 2.6e-34 150.2 136 61.8
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 5.4e-32 142.5 106 67.0
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 2.1e-31 140.6 126 60.3
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 2.1e-28 130.6 107 60.7
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 2.1e-28 130.6 107 60.7
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.8e-28 130.2 92 70.7
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 3.1e-27 126.7 94 66.0
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 1.3e-25 121.3 175 44.0
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 8.4e-25 118.6 292 32.9
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 1.9e-21 107.5 96 57.3
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 3.3e-21 106.7 83 68.7
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 3.3e-21 106.7 78 62.8
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 4.3e-21 106.3 78 65.4
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 7.4e-21 105.5 78 65.4
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 2.8e-20 103.6 89 56.2
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 7.6e-18 95.5 233 33.0
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 1.0e-17 95.1 71 67.6
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 2.9e-17 93.6 78 64.1
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 3.8e-17 93.2 62 69.4
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 3.8e-17 93.2 78 62.8
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 5.5e-16 89.4 94 48.9
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 1.1e-13 81.6 67 59.7
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 5.7e-13 79.3 69 56.5
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 1.3e-12 78.2 60 65.0
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 1.1e-11 75.1 125 42.4
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 8.5e-09 65.5 54 63.0
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 8.5e-09 65.5 54 63.0
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 8.5e-09 65.5 54 63.0
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 8.5e-09 65.5 54 63.0
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 1.4e-08 64.7 56 58.9
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 2.5e-08 63.9 82 43.9
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 3.2e-08 63.5 54 61.1
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 3.2e-08 63.5 54 61.1
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 3.2e-08 63.5 54 61.1
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 3.2e-08 63.5 163 30.1
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 5.5e-08 62.8 54 63.0
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 2.1e-07 60.8 207 26.6
BcaB06g26914 Brassica carinata HOM05D004238 ORTHO05D004934 1.8e-06 57.8 56 55.4
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 2.3e-06 57.4 63 54.0
BcaB06g26915 Brassica carinata HOM05D004238 ORTHO05D004934 3.9e-06 56.6 53 58.5


User provided reference genes

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