Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.2e-203 713.0 375 100.0
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 5.0e-181 637.9 375 89.3
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 4.8e-176 621.3 491 72.1
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 4.2e-172 608.2 513 68.4
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 2.6e-137 492.7 370 70.8
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 5.7e-137 491.5 370 70.0
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.4e-135 486.9 370 68.9
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 5.9e-134 481.5 372 69.1
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 1.7e-133 479.9 370 67.8
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 2.3e-133 479.6 370 68.4
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 6.6e-133 478.0 370 68.4
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.1e-132 477.2 370 68.1
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 4.3e-132 475.3 364 67.0
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 5.6e-132 474.9 370 67.8
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 3.1e-130 469.2 370 66.8
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 6.8e-130 468.0 376 66.5
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 7.5e-129 464.5 364 65.7
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 2.2e-128 463.0 370 65.7
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 3.2e-127 459.1 363 66.1
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.4e-127 458.4 365 65.8
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.4e-127 458.4 362 66.3
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 1.2e-126 457.2 367 63.8
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.7e-125 453.4 370 65.9
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.3e-125 453.0 371 65.2
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 3.9e-125 452.2 370 63.0
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 3.9e-125 452.2 371 63.1
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 1.1e-124 450.7 371 65.0
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.9e-124 449.9 376 63.6
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 7.3e-124 448.0 364 65.4
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 3.6e-123 445.7 370 65.1
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 2.3e-122 443.0 370 63.8
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 3.1e-122 442.6 370 62.7
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 8.9e-122 441.0 370 62.7
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 1.2e-121 440.7 370 62.4
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 2.0e-121 439.9 366 61.7
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.4e-121 439.1 367 62.7
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 2.9e-120 436.0 370 63.0
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 8.3e-120 434.5 375 60.8
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 8.3e-120 434.5 375 60.8
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 2.4e-119 433.0 370 61.6
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 2.4e-119 433.0 370 61.4
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 3.2e-119 432.6 369 59.9
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 7.8e-118 427.9 370 61.1
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 1.7e-117 426.8 370 62.2
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 3.0e-117 426.0 370 61.6
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 6.6e-117 424.9 364 60.2
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 1.9e-116 423.3 371 62.3
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 3.3e-116 422.5 364 59.3
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 4.7e-115 418.7 374 60.4
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 6.2e-115 418.3 370 61.1
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 6.2e-115 418.3 369 59.9
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 8.1e-115 417.9 364 58.2
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 1.1e-114 417.5 364 57.4
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.1e-114 417.5 364 58.0
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 3.1e-114 416.0 364 57.4
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 6.8e-114 414.8 372 60.2
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 4.4e-113 412.1 372 58.6
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 5.8e-113 411.8 364 59.6
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 9.9e-113 411.0 367 58.6
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 2.2e-112 409.8 374 58.3
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.9e-112 409.5 372 59.1
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 3.7e-112 409.1 379 56.5
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 1.4e-111 407.1 364 59.1
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.9e-111 406.8 367 58.0
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 1.9e-111 406.8 370 58.6
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 2.4e-111 406.4 371 58.8
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 9.2e-111 404.4 367 58.3
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 9.2e-111 404.4 370 58.6
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 1.2e-110 404.1 325 65.8
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.2e-110 404.1 367 57.8
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 3.5e-110 402.5 371 58.0
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 1.0e-109 401.0 368 57.9
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 1.3e-109 400.6 370 58.4
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 5.1e-109 398.7 364 56.0
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 6.6e-109 398.3 368 57.3
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 1.1e-108 397.5 365 57.0
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.1e-108 397.5 369 57.7
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 1.5e-108 397.1 408 54.4
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.9e-108 396.7 368 58.2
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 7.3e-108 394.8 367 56.4
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.2e-107 394.0 369 56.6
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 2.8e-107 392.9 368 56.8
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 2.8e-107 392.9 363 58.7
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 3.6e-107 392.5 314 65.9
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 4.7e-107 392.1 370 56.2
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 6.2e-107 391.7 368 57.3
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.1e-106 391.0 381 55.1
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 2.4e-106 389.8 369 56.6
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 6.8e-106 388.3 369 56.4
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 6.8e-106 388.3 369 56.4
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 6.8e-106 388.3 332 60.2
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 8.9e-106 387.9 386 55.2
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 8.9e-106 387.9 369 56.4
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 3.8e-104 382.5 367 55.3
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 4.9e-104 382.1 359 56.3
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 6.4e-104 381.7 372 55.1
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 6.4e-104 381.7 368 55.7
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 1.1e-103 380.9 374 55.9
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 1.9e-103 380.2 376 53.2
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 5.4e-103 378.6 374 55.9
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 4.6e-102 375.6 369 54.2
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 7.8e-102 374.8 370 54.9
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 1.7e-101 373.6 402 51.5
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 2.3e-101 373.2 409 50.6
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 2.3e-101 373.2 406 51.0
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 8.7e-101 371.3 384 54.4
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 1.1e-100 370.9 356 57.6
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 1.5e-100 370.5 367 53.1
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 1.5e-100 370.5 391 50.9
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 2.8e-99 366.3 288 65.3
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 6.2e-99 365.2 314 62.7
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 2.4e-98 363.2 370 56.2
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 3.1e-98 362.8 286 63.3
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 4.0e-98 362.5 361 54.0
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 1.5e-97 360.5 357 54.6
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 2.6e-97 359.8 358 54.5
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 1.7e-96 357.1 311 62.1
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 1.1e-95 354.4 374 52.7
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 1.4e-95 354.0 375 53.6
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 4.6e-94 349.0 374 51.3
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 5.1e-93 345.5 570 41.6
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.5e-92 344.0 318 58.5
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 7.3e-92 341.7 365 50.1
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 9.6e-92 341.3 370 50.8
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 9.9e-89 331.3 356 53.4
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 1.4e-87 327.4 375 48.0
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 4.2e-87 325.9 313 58.1
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 5.6e-84 315.5 313 55.0
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 1.2e-78 297.7 475 40.0
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 3.7e-75 286.2 304 52.0
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 5.8e-73 278.9 210 67.1
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.0e-72 275.8 208 67.3
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 1.9e-71 273.9 208 64.9
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 3.3e-68 263.1 212 61.8
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 9.7e-68 261.5 207 62.8
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.1e-66 256.5 299 50.2
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.2e-62 244.6 166 74.1
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 7.9e-62 241.9 313 46.0
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.4e-61 241.1 171 71.9
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 2.3e-61 240.4 316 43.0
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 3.0e-61 240.0 171 71.9
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 8.8e-61 238.4 171 70.8
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.5e-60 237.7 215 59.1
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.5e-60 236.9 169 72.2
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.3e-59 234.6 215 58.1
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 2.8e-59 233.4 201 60.2
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 2.4e-58 230.3 165 67.9
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.3e-58 229.2 162 70.4
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 2.9e-56 223.4 341 41.6
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 5.0e-56 222.6 171 69.0
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 1.1e-55 221.5 384 35.9
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 1.8e-53 214.2 280 48.2
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.0e-52 210.7 388 36.3
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.8e-51 206.8 189 61.9
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 7.7e-49 198.7 155 63.2
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.9e-48 196.8 389 34.2
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 3.8e-48 196.4 381 35.2
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 3.2e-47 193.4 378 33.1
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.2e-43 180.6 381 31.0
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 9.1e-42 175.3 257 43.2
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.2e-40 170.6 130 66.2
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 2.2e-40 170.6 377 33.4
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.5e-39 166.0 110 77.3
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 6.1e-38 162.5 201 43.8
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 8.0e-38 162.2 125 61.6
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.7e-36 156.0 152 55.9
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 7.5e-36 155.6 158 52.5
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 9.8e-36 155.2 158 52.5
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 2.2e-35 154.1 162 54.3
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 3.0e-29 133.7 128 52.3
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 5.7e-28 129.4 135 51.9
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 1.4e-26 124.8 172 41.9
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 5.9e-25 119.4 136 52.2
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 8.6e-24 115.5 137 50.4
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 1.4e-21 108.2 260 30.0
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 6.2e-14 82.8 309 28.5
Cfa024504 Carpinus fangiana HOM05D002209 ORTHO05D004761 2.5e-07 60.8 380 22.4


User provided reference genes

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