Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 9.5e-83 310.5 197 100.0
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 4.3e-43 178.7 201 58.7
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 1.3e-42 177.2 136 71.3
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 2.2e-39 166.4 138 63.8
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 7.1e-38 161.4 136 64.7
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 9.3e-38 161.0 197 61.4
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 2.1e-37 159.8 136 63.2
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 1.3e-36 157.1 206 62.6
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 2.3e-36 156.4 136 66.9
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 3.0e-36 156.0 136 66.2
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 3.0e-36 156.0 141 64.5
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 3.9e-36 155.6 139 65.5
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 6.7e-36 154.8 139 65.5
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 6.7e-36 154.8 136 64.0
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 6.7e-36 154.8 198 56.1
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 8.7e-36 154.5 136 65.4
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 1.1e-35 154.1 136 65.4
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 1.5e-35 153.7 198 57.1
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 2.5e-35 152.9 201 59.7
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 5.7e-35 151.8 139 61.2
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 5.7e-35 151.8 139 60.4
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 5.7e-35 151.8 133 63.2
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 7.4e-35 151.4 140 61.4
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 7.4e-35 151.4 203 51.7
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 9.7e-35 151.0 139 64.7
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 9.7e-35 151.0 138 65.9
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 1.6e-34 150.2 141 61.0
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 2.2e-34 149.8 200 57.0
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 6.3e-34 148.3 137 64.2
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 8.2e-34 147.9 139 61.2
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.4e-33 147.1 200 56.0
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.8e-33 146.7 137 62.8
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.8e-33 146.7 130 60.8
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.4e-33 146.4 207 59.9
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 2.4e-33 146.4 201 60.2
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 3.1e-33 146.0 202 54.0
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 3.1e-33 146.0 136 58.8
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 5.3e-33 145.2 141 61.7
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 5.3e-33 145.2 134 61.9
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 9.0e-33 144.4 157 57.3
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 9.0e-33 144.4 135 62.2
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 9.0e-33 144.4 142 59.9
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 9.0e-33 144.4 139 61.9
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 1.5e-32 143.7 115 68.7
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 2.6e-32 142.9 141 60.3
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 3.4e-32 142.5 128 62.5
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 3.4e-32 142.5 145 57.2
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 4.5e-32 142.1 126 60.3
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 5.9e-32 141.7 133 64.7
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 1.0e-31 141.0 137 60.6
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 1.3e-31 140.6 132 59.8
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 2.9e-31 139.4 138 60.1
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 2.9e-31 139.4 133 60.9
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 5.0e-31 138.7 134 59.7
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 8.5e-31 137.9 140 56.4
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 1.4e-30 137.1 143 59.4
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 1.4e-30 137.1 107 67.3
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 2.5e-30 136.3 134 58.2
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 4.2e-30 135.6 141 55.3
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 5.5e-30 135.2 132 59.1
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 7.2e-30 134.8 138 58.0
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 1.2e-29 134.0 139 56.1
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 1.6e-29 133.7 135 55.6
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 2.1e-29 133.3 138 58.0
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 2.1e-29 133.3 117 61.5
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.6e-29 132.5 138 58.0
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 3.6e-29 132.5 140 55.7
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 3.6e-29 132.5 134 58.2
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 4.6e-29 132.1 137 56.9
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 4.6e-29 132.1 134 56.7
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 6.1e-29 131.7 140 55.7
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 6.1e-29 131.7 140 57.1
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 7.9e-29 131.3 139 54.7
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 7.9e-29 131.3 134 56.0
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 1.0e-28 131.0 133 56.4
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 1.8e-28 130.2 138 52.9
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 5.1e-28 128.6 125 55.2
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 1.5e-27 127.1 138 55.1
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.0e-27 126.7 136 53.7
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 2.5e-27 126.3 139 54.7
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 5.7e-27 125.2 139 53.2
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 5.7e-27 125.2 139 55.4
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 9.7e-27 124.4 138 54.3
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.3e-26 124.0 134 55.2
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 1.7e-26 123.6 141 53.2
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 2.2e-26 123.2 137 54.7
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 2.2e-26 123.2 83 74.7
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 3.7e-26 122.5 146 52.7
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.7e-26 122.5 143 52.4
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 3.7e-26 122.5 116 61.2
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 6.3e-26 121.7 129 55.0
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 1.1e-25 120.9 141 51.1
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 3.1e-25 119.4 138 52.9
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 3.1e-25 119.4 138 52.9
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 4.1e-25 119.0 141 51.8
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 4.5e-24 115.5 147 51.0
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 1.0e-23 114.4 136 52.2
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 1.3e-23 114.0 97 62.9
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 1.7e-23 113.6 141 48.2
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 2.2e-23 113.2 140 49.3
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 2.9e-23 112.8 138 48.6
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.1e-22 110.9 139 49.6
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 1.1e-22 110.9 72 75.0
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 3.2e-22 109.4 120 52.5
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 3.2e-22 109.4 142 47.2
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 4.2e-22 109.0 132 50.0
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 5.5e-22 108.6 132 49.2
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 7.2e-22 108.2 136 50.0
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 7.2e-22 108.2 136 50.0
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.2e-21 107.5 138 47.8
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 1.2e-21 107.5 127 53.5
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 2.7e-21 106.3 83 67.5
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 2.7e-21 106.3 124 51.6
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 3.6e-21 105.9 127 49.6
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 4.7e-21 105.5 132 48.5
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 4.7e-21 105.5 144 48.6
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 6.1e-21 105.1 139 47.5
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 6.1e-21 105.1 139 47.5
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 1.0e-20 104.4 92 62.0
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 1.4e-20 104.0 133 48.1
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 1.4e-20 104.0 133 48.1
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 1.4e-20 104.0 133 48.1
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 2.3e-20 103.2 139 46.8
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 5.1e-20 102.1 139 46.0
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 6.7e-20 101.7 137 46.0
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 1.1e-19 100.9 128 48.4
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 1.1e-19 100.9 128 48.4
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 1.1e-19 100.9 86 60.5
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 2.0e-19 100.1 141 45.4
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 3.3e-19 99.4 88 61.4
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 1.3e-18 97.4 91 59.3
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 2.2e-18 96.7 82 62.2
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 2.8e-18 96.3 123 52.8
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 4.8e-18 95.5 126 47.6
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 6.3e-18 95.1 74 63.5
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 8.2e-18 94.7 134 47.8
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 7.0e-17 91.7 188 39.4
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 3.8e-15 85.9 61 68.9
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 1.6e-13 80.5 72 61.1
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 2.1e-13 80.1 61 68.9
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 3.6e-13 79.3 148 43.9
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 6.1e-13 78.6 59 67.8
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 8.8e-12 74.7 59 66.1
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 8.8e-12 74.7 136 39.0
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 1.5e-11 73.9 120 43.3
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.3e-11 72.8 46 78.3
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.7e-10 70.5 57 63.2
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 5.3e-09 65.5 59 57.6
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 2.0e-08 63.5 47 63.8
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 2.6e-08 63.2 85 43.5
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 3.8e-07 59.3 88 39.8
FAN10G1293 Fragaria x ananassa HOM05D004771 ORTHO05D005565 7.2e-06 55.1 43 65.1


User provided reference genes

Program Settings